Chromatin and Small RNA Regulation of Nucleolar Dominance
暂无分享,去创建一个
[1] S. Jacobsen,et al. Histone methyltransferases regulating rRNA gene dose and dosage control in Arabidopsis. , 2012, Genes & development.
[2] Y. Qi,et al. Genome-Wide Analysis of DNA Methylation and Gene Expression Changes in Two Arabidopsis Ecotypes and Their Reciprocal Hybrids[W] , 2012, Plant Cell.
[3] Gunter Meister,et al. Small RNAs derived from longer non-coding RNAs. , 2011, Biochimie.
[4] Charles W. Melnyk,et al. Mobile 24 nt Small RNAs Direct Transcriptional Gene Silencing in the Root Meristems of Arabidopsis thaliana , 2011, Current Biology.
[5] O. Voinnet,et al. Cell-to-cell and long-distance siRNA movement in plants: mechanisms and biological implications. , 2011, Current opinion in plant biology.
[6] Haifan Lin,et al. Small noncoding RNAs in the germline. , 2011, Cold Spring Harbor perspectives in biology.
[7] Julie A. Law,et al. SHH1, a Homeodomain Protein Required for DNA Methylation, As Well As RDR2, RDM4, and Chromatin Remodeling Factors, Associate with RNA Polymerase IV , 2011, PLoS genetics.
[8] S. Jacobsen,et al. Epigenetic modifications in plants: an evolutionary perspective. , 2011, Current opinion in plant biology.
[9] A. Aravin,et al. PIWI-interacting small RNAs: the vanguard of genome defence , 2011, Nature Reviews Molecular Cell Biology.
[10] Huiming Zhang,et al. RNA-directed DNA methylation. , 2011, Current opinion in plant biology.
[11] Ming-Ming Zhou,et al. The SUVR4 Histone Lysine Methyltransferase Binds Ubiquitin and Converts H3K9me1 to H3K9me3 on Transposon Chromatin in Arabidopsis , 2011, PLoS genetics.
[12] W. Peacock,et al. Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor , 2011, Proceedings of the National Academy of Sciences.
[13] H. Vaucheret,et al. Form, Function, and Regulation of ARGONAUTE Proteins , 2010, Plant Cell.
[14] Hailing Jin,et al. Role of small RNAs in host-microbe interactions. , 2010, Annual review of phytopathology.
[15] C. Pikaard,et al. Mechanisms of HDA6-mediated rRNA gene silencing: suppression of intergenic Pol II transcription and differential effects on maintenance versus siRNA-directed cytosine methylation. , 2010, Genes & development.
[16] Julie A. Law,et al. A Protein Complex Required for Polymerase V Transcripts and RNA- Directed DNA Methylation in Arabidopsis , 2010, Current Biology.
[17] Charles W. Melnyk,et al. JMJ14, a JmjC domain protein, is required for RNA silencing and cell-to-cell movement of an RNA silencing signal in Arabidopsis. , 2010, Genes & development.
[18] C. Pikaard,et al. Extra views on RNA-dependent DNA methylation and MBD6-dependent heterochromatin formation in nucleolar dominance , 2010, Nucleus.
[19] Hailing Jin,et al. An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation , 2010, Nature.
[20] Julie A. Law,et al. Establishing, maintaining and modifying DNA methylation patterns in plants and animals , 2010, Nature Reviews Genetics.
[21] Thomas J. Hardcastle,et al. The Arabidopsis RNA-Directed DNA Methylation Argonautes Functionally Diverge Based on Their Expression and Interaction with Target Loci[W][OA] , 2010, Plant Cell.
[22] Xuemei Chen,et al. Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis. , 2009, Genes & development.
[23] I. Grummt,et al. Reversible acetylation of the chromatin remodelling complex NoRC is required for non-coding RNA-dependent silencing , 2009, Nature Cell Biology.
[24] C. Pikaard,et al. RNA polymerase V functions in Arabidopsis interphase heterochromatin organization independently of the 24-nt siRNA-directed DNA methylation pathway. , 2009, Molecular plant.
[25] Claire Picart,et al. RNA‐directed DNA methylation requires an AGO4‐interacting member of the SPT5 elongation factor family , 2009, EMBO reports.
[26] Hailing Jin,et al. An Effector of RNA-Directed DNA Methylation in Arabidopsis Is an ARGONAUTE 4- and RNA-Binding Protein , 2009, Cell.
[27] C. Pikaard,et al. RNA Polymerase V transcription guides ARGONAUTE4 to chromatin , 2009, Nature Genetics.
[28] Olivier Voinnet,et al. Revisiting the principles of microRNA target recognition and mode of action , 2009, Nature Reviews Molecular Cell Biology.
[29] L. Paša-Tolić,et al. Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II. , 2009, Molecular cell.
[30] D. Baulcombe,et al. Multimegabase silencing in nucleolar dominance involves siRNA-directed DNA methylation and specific methylcytosine-binding proteins. , 2008, Molecular cell.
[31] M. Axtell,et al. Physcomitrella patens DCL3 Is Required for 22–24 nt siRNA Accumulation, Suppression of Retrotransposon-Derived Transcripts, and Normal Development , 2008, PLoS genetics.
[32] C. Pikaard,et al. Noncoding Transcription by RNA Polymerase Pol IVb/Pol V Mediates Transcriptional Silencing of Overlapping and Adjacent Genes , 2008, Cell.
[33] V. Moulton,et al. Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. , 2008, Genome research.
[34] I. Grummt,et al. The structure of NoRC‐associated RNA is crucial for targeting the chromatin remodelling complex NoRC to the nucleolus , 2008, EMBO reports.
[35] David P. Kreil,et al. A structural-maintenance-of-chromosomes hinge domain–containing protein is required for RNA-directed DNA methylation , 2008, Nature Genetics.
[36] R. Hasterok,et al. Cytogenetic evidence of nucleolar dominance in allotetraploid species of Brachypodium. , 2008, Genome.
[37] Z. Chen,et al. RNAi of met1 Reduces DNA Methylation and Induces Genome-Specific Changes in Gene Expression and Centromeric Small RNA Accumulation in Arabidopsis Allopolyploids , 2008, Genetics.
[38] D. Baulcombe,et al. PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis , 2008, Proceedings of the National Academy of Sciences.
[39] G. Meister,et al. The Argonaute protein family , 2008, Genome Biology.
[40] Steven Henikoff,et al. Genome-wide analysis of DNA methylation patterns , 2007, Development.
[41] Craig S. Pikaard,et al. Postembryonic Establishment of Megabase-Scale Gene Silencing in Nucleolar Dominance , 2007, PloS one.
[42] D. Baulcombe,et al. miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii , 2007, Nature.
[43] N. Lau,et al. The coming of age for Piwi proteins. , 2007, Molecular cell.
[44] D. Baulcombe,et al. An SNF2 Protein Associated with Nuclear RNA Silencing and the Spread of a Silencing Signal between Cells in Arabidopsis[W][OA] , 2007, The Plant Cell Online.
[45] Xianwu Zheng,et al. Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing , 2007, The EMBO journal.
[46] B. Meyers,et al. An expression atlas of rice mRNAs and small RNAs , 2007, Nature Biotechnology.
[47] Jason S. Cumbie,et al. Genome-Wide Profiling and Analysis of Arabidopsis siRNAs , 2007, PLoS biology.
[48] G. Längst,et al. NoRC‐dependent nucleosome positioning silences rRNA genes , 2006, The EMBO journal.
[49] J. Jurka,et al. Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation , 2006, Nature.
[50] B. Hogan,et al. Sox2 is required for development of taste bud sensory cells. , 2006, Genes & development.
[51] Joshua P. White,et al. An RNA-dependent RNA polymerase is required for paramutation in maize , 2006, Nature.
[52] Craig S. Pikaard,et al. An ARGONAUTE4-Containing Nuclear Processing Center Colocalized with Cajal Bodies in Arabidopsis thaliana , 2006, Cell.
[53] S. Jacobsen,et al. The Arabidopsis Chromatin-Modifying Nuclear siRNA Pathway Involves a Nucleolar RNA Processing Center , 2006, Cell.
[54] M. Matzke,et al. Endogenous targets of RNA‐directed DNA methylation and Pol IV in Arabidopsis , 2006, The EMBO journal.
[55] C. Pikaard,et al. Erasure of histone acetylation by Arabidopsis HDA6 mediates large-scale gene silencing in nucleolar dominance. , 2006, Genes & development.
[56] I. Grummt,et al. Intergenic transcripts regulate the epigenetic state of rRNA genes. , 2006, Molecular cell.
[57] H. Vaucheret. Post-transcriptional small RNA pathways in plants: mechanisms and regulations. , 2006, Genes & development.
[58] Xuemei Chen,et al. HEN1 recognizes 21–24 nt small RNA duplexes and deposits a methyl group onto the 2′ OH of the 3′ terminal nucleotide , 2006, Nucleic acids research.
[59] O. Borsani,et al. Endogenous siRNAs Derived from a Pair of Natural cis-Antisense Transcripts Regulate Salt Tolerance in Arabidopsis , 2005, Cell.
[60] R. Martienssen,et al. Differential Regulation of Strand-Specific Transcripts from Arabidopsis Centromeric Satellite Repeats , 2005, PLoS genetics.
[61] I. Grummt,et al. The PHD Finger/Bromodomain of NoRC Interacts with Acetylated Histone H4K16 and Is Sufficient for rDNA Silencing , 2005, Current Biology.
[62] David P. Kreil,et al. Atypical RNA polymerase subunits required for RNA-directed DNA methylation , 2005, Nature Genetics.
[63] I. Grummt,et al. The nucleolus as a stress sensor: JNK2 inactivates the transcription factor TIF-IA and down-regulates rRNA synthesis. , 2005, Genes & development.
[64] D. Baulcombe,et al. RNA Polymerase IV Directs Silencing of Endogenous DNA , 2005, Science.
[65] C. Pikaard,et al. Plant Nuclear RNA Polymerase IV Mediates siRNA and DNA Methylation-Dependent Heterochromatin Formation , 2005, Cell.
[66] C. Pikaard,et al. Chromosomal locus rearrangements are a rapid response to formation of the allotetraploid Arabidopsis suecica genome , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[67] Franck Vazquez,et al. Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. , 2004, Molecular cell.
[68] Gang Wu,et al. SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis. , 2004, Genes & development.
[69] D. Baulcombe. RNA silencing in plants , 2004, Nature.
[70] J. Cheverud,et al. Evidence for Nucleolus Organizer Regions as the Units of Regulation in Nucleolar Dominance in Arabidopsis thaliana Interecotype Hybrids , 2004, Genetics.
[71] Z. Chen,et al. A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance. , 2004, Molecular cell.
[72] D. Zilberman,et al. RNA Silencing Genes Control de Novo DNA Methylation , 2004, Science.
[73] Adam M. Gustafson,et al. Genetic and Functional Diversification of Small RNA Pathways in Plants , 2004, PLoS biology.
[74] P. Loidl. A plant dialect of the histone language. , 2004, Trends in plant science.
[75] Marjori Matzke,et al. Role of the DRM and CMT3 Methyltransferases in RNA-Directed DNA Methylation , 2003, Current Biology.
[76] C. Pikaard,et al. Transgene-induced RNA interference: a strategy for overcoming gene redundancy in polyploids to generate loss-of-function mutations. , 2003, The Plant journal : for cell and molecular biology.
[77] Z. Chen,et al. Natural variation in nucleolar dominance reveals the relationship between nucleolus organizer chromatin topology and rRNA gene transcription in Arabidopsis , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[78] C. Pikaard,et al. Epigenetic silencing of RNA polymerase I transcription , 2003, Nature Reviews Molecular Cell Biology.
[79] M. Nomura,et al. In Exponentially Growing Saccharomyces cerevisiae Cells, rRNA Synthesis Is Determined by the Summed RNA Polymerase I Loading Rate Rather than by the Number of Active Genes , 2003, Molecular and Cellular Biology.
[80] M. Matzke,et al. HDA6, a putative histone deacetylase needed to enhance DNA methylation induced by double‐stranded RNA , 2002, The EMBO journal.
[81] S. Jacobsen,et al. Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[82] I. Grummt,et al. The nucleolar remodeling complex NoRC mediates heterochromatin formation and silencing of ribosomal gene transcription , 2002, Nature Genetics.
[83] C. Pikaard,et al. Uniting the paths to gene silencing , 2002, Nature Genetics.
[84] Christopher M. Gallo,et al. RPD3 is required for the inactivation of yeast ribosomal DNA genes in stationary phase , 2002, The EMBO journal.
[85] Craig L. Peterson,et al. Chromatin Higher Order Folding--Wrapping up Transcription , 2002, Science.
[86] K. Tomoo,et al. Reviving China's ruined rivers. , 2002, Environmental health perspectives.
[87] R. Malhó,et al. Genome restructuring in rye affects the expression, organization and disposition of homologous rDNA loci. , 2002, Journal of cell science.
[88] S. Jacobsen,et al. Role of the Arabidopsis DRM Methyltransferases in De Novo DNA Methylation and Gene Silencing , 2002, Current Biology.
[89] M. A. Rector,et al. Endogenous and Silencing-Associated Small RNAs in Plants Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.003210. , 2002, The Plant Cell Online.
[90] M. Kashlev,et al. Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription. , 2002, Molecular cell.
[91] C. Pikaard,et al. Restricted chromosomal silencing in nucleolar dominance , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[92] G. Hannon,et al. The rest is silence. , 2001, RNA.
[93] G. Längst,et al. NoRC—a novel member of mammalian ISWI‐containing chromatin remodeling machines , 2001, The EMBO journal.
[94] I. Grummt,et al. Molecular mechanisms mediating methylation-dependent silencing of ribosomal gene transcription. , 2001, Molecular cell.
[95] R. Kingston,et al. Mechanisms of transcriptional memory , 2001, Nature Reviews Molecular Cell Biology.
[96] J. P. Jackson,et al. Requirement of CHROMOMETHYLASE3 for Maintenance of CpXpG Methylation , 2001, Science.
[97] T. Powledge. Changing the rules? , 2001 .
[98] The Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana , 2000, Nature.
[99] Michael Grunstein,et al. Global histone acetylation and deacetylation in yeast , 2000, Nature.
[100] C. Carles,et al. The recruitment of RNA polymerase I on rDNA is mediated by the interaction of the A43 subunit with Rrn3 , 2000, The EMBO journal.
[101] A. Hall,et al. Functional independence of circadian clocks that regulate plant gene expression , 2000, Current Biology.
[102] H. Zentgraf,et al. TIF‐IA, the factor mediating growth‐dependent control of ribosomal RNA synthesis, is the mammalian homolog of yeast Rrn3p , 2000, EMBO reports.
[103] C. Pikaard. Nucleolar dominance: uniparental gene silencing on a multi-megabase scale in genetic hybrids , 2000, Plant Molecular Biology.
[104] C. Allis,et al. The language of covalent histone modifications , 2000, Nature.
[105] M. Cotton,et al. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana , 1999, Nature.
[106] Eugen C. Buehler,et al. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana , 1999, Nature.
[107] J. Warner,et al. The economics of ribosome biosynthesis in yeast. , 1999, Trends in biochemical sciences.
[108] Z. Chen,et al. Gene dosage and stochastic effects determine the severity and direction of uniparental ribosomal RNA gene silencing (nucleolar dominance) in Arabidopsis allopolyploids. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[109] J. Workman,et al. Nucleosome binding by the polymerase I transactivator upstream binding factor displaces linker histone H1 , 1997, Molecular and cellular biology.
[110] Z. Chen,et al. Epigenetic silencing of RNA polymerase I transcription: a role for DNA methylation and histone modification in nucleolar dominance. , 1997, Genes & development.
[111] J. Sogo,et al. Chromatin structure and methylation of rat rRNA genes studied by formaldehyde fixation and psoralen cross-linking. , 1997, Nucleic acids research.
[112] Z. Chen,et al. Transcriptional analysis of nucleolar dominance in polyploid plants: biased expression/silencing of progenitor rRNA genes is developmentally regulated in Brassica. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[113] C. Pikaard,et al. Two-dimensional RFLP analyses reveal megabase-sized clusters of rRNA gene variants in Arabidopsis thaliana, suggesting local spreading of variants as the mode for gene homogenization during concerted evolution. , 1996, The Plant journal : for cell and molecular biology.
[114] L. Morais-Cecílio,et al. Reprogramming of rye rDNA in triticale during microsporogenesis , 1995, Chromosome Research.
[115] C. Pikaard,et al. The minimal ribosomal RNA gene promoter of Arabidopsis thaliana includes a critical element at the transcription initiation site. , 1995, The Plant journal : for cell and molecular biology.
[116] P. Shaw,et al. The nucleolar architecture of polymerase I transcription and processing. , 1995, The EMBO journal.
[117] W. Viegas,et al. The developmental stage of inactivation of rye origin rRNA genes in the embryo and endosperm of wheat × rye F1 hybrids , 1995, Chromosome Research.
[118] S. Jacob. Regulation of ribosomal gene transcription. , 1995, The Biochemical journal.
[119] Tetsuji Kakutani,et al. Characterization of an Arabidopsis thaliana DNA hypomethylation mutant , 1995, Nucleic Acids Res..
[120] R. Leigh,et al. Membrane potential‐dependent calcium transport in right‐side‐out plasma membrane vesicles from Zea mays L. roots , 1994 .
[121] C. Pikaard,et al. Functional analysis of Arabidopsis thaliana rRNA gene and spacer promoters in vivo and by transient expression. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[122] R. Dammann,et al. Chromatin structures and transcription of rDNA in yeast Saccharomyces cerevisiae. , 1993, Nucleic acids research.
[123] D. Hernandez-Verdun,et al. Localization of the RNA polymerase I transcription factor hUBF during the cell cycle. , 1993, Journal of cell science.
[124] I. Grummt,et al. Dual role of the nucleolar transcription factor UBF: trans-activator and antirepressor. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[125] G. Grimaldi,et al. Spacer promoters are orientation-dependent activators of pre-rRNA transcription in Drosophila melanogaster , 1990, Molecular and cellular biology.
[126] J. Sogo,et al. Two different chromatin structures coexist in ribosomal RNA genes throughout the cell cycle , 1989, Cell.
[127] C. Bostock,et al. Different subfamilies of alphoid repetitive DNA are present on the human and chimpanzee homologous chromosomes 21 and 22. , 1987, The EMBO journal.
[128] R. Flavell,et al. Repetitive DNA and chromosome evolution in plants. , 1986, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[129] V. Vogt,et al. The ribosomal RNA gene cluster in aneuploid chickens: evidence for increased gene dosage and regulation of gene expression , 1985, The Journal of cell biology.
[130] R. Reeder. Mechanisms of nucleolar dominance in animals and plants , 1985, The Journal of cell biology.
[131] C. Cantor,et al. Reversible changes in nucleosome structure and histone H3 accessibility in transcriptionally active and inactive states of rDNA chromatin , 1983, Cell.
[132] I. Grummt,et al. Ribosomal RNA transcription in vitro is species specific , 1982, Nature.
[133] J. Szostak,et al. Unequal crossing over in the ribosomal DNA of Saccharomyces cerevisiae , 1980, Nature.
[134] S. Bloom,et al. An improved technique for selective silver staining of nucleolar organizer regions in human chromosomes , 1976, Human Genetics.
[135] Eugene A. Arnold,et al. Isolation and characterization of the DNA fraction of rat liver chromatin which binds polylysine. , 1975, Nucleic acids research.
[136] M. Haas. Continuous production of radiation leukemia virus in c57bl thymoma tissue culture lines, purification of the leukemogenic virus. , 1974 .
[137] W. Langridge,et al. Differential amphiplasty and the control of ribosomal RNA synthesis1 , 1971, Heredity.
[138] D. Phillips,et al. DISTINCTIVE CHARACTERISTICS OF NUCLEOLI OF TWO ESTABLISHED CELL LINES , 1971, The Journal of cell biology.
[139] M. Birnstiel,et al. Ribosomal cistrons and the nucleolar organizer. , 1966, Biochimica et biophysica acta.
[140] M. Navashin. Chromosome Alterations Caused by Hybridization and Their Bearing upon Certain General Genetic Problems , 1934 .
[141] E. Heitz. Die Ursache der gesetzmässigen Zahl, Lage, Form und Grösse pflanzlicher Nukleolen , 1931, Planta.
[142] G. Hannon,et al. Small RNA sorting: matchmaking for Argonautes , 2011, Nature Reviews Genetics.
[143] I. Grummt,et al. Noncoding transcripts in sense and antisense orientation regulate the epigenetic state of ribosomal RNA genes. , 2010, Cold Spring Harbor symposia on quantitative biology.
[144] Alexandra M. E. Jones,et al. An atypical RNA polymerase involved in RNA silencing shares small subunits with RNA polymerase II , 2009, Nature Structural &Molecular Biology.
[145] S. Pais,et al. Physical mapping, expression patterns and interphase organisation of rDNA loci in Portuguese endemic Silene cintrana and Silene rothmaleri , 2004, Chromosome Research.
[146] B. Mcclintock. The relation of a particular chromosomal element to the development of the nucleoli in Zea mays , 2004, Zeitschrift für Zellforschung und Mikroskopische Anatomie.
[147] D. Baulcombe,et al. RNA silencing pathways in plants. , 2004, Cold Spring Harbor symposia on quantitative biology.
[148] Dmitri A. Nusinow,et al. Xist RNA and the mechanism of X chromosome inactivation. , 2002, Annual review of genetics.
[149] C. Cremer. NUCLEAR ARCHITECTURE AND GENE REGULATION IN MAMMALIAN CELLS , 2001 .
[150] I. Grummt. Regulation of mammalian ribosomal gene transcription by RNA polymerase I. , 1999, Progress in nucleic acid research and molecular biology.
[151] I. Henderson,et al. Supplemental Data S 1 The SRA Methyl-Cytosine-Binding Domain Links DNA and Histone Methylation , 2022 .