Predicting intervention onset in the ICU with switching state space models

The impact of many intensive care unit interventions has not been fully quantified, especially in heterogeneous patient populations. We train unsupervised switching state autoregressive models on vital signs from the public MIMIC-III database to capture patient movement between physiological states. We compare our learned states to static demographics and raw vital signs in the prediction of five ICU treatments: ventilation, vasopressor administra tion, and three transfusions. We show that our learned states, when combined with demographics and raw vital signs, improve prediction for most interventions even 4 or 8 hours ahead of onset. Our results are competitive with existing work while using a substantially larger and more diverse cohort of 36,050 patients. While custom classifiers can only target a specific clinical event, our model learns physiological states which can help with many interventions. Our robust patient state representations provide a path towards evidence-driven administration of clinical interventions.

[1]  João Miguel da Costa Sousa,et al.  Ensemble fuzzy models in personalized medicine: Application to vasopressors administration , 2016, Eng. Appl. Artif. Intell..

[2]  S. Lemeshow,et al.  A new Simplified Acute Physiology Score (SAPS II) based on a European/North American multicenter study. , 1993, JAMA.

[3]  Peter Szolovits,et al.  ICU Acuity: Real-time Models versus Daily Models , 2009, AMIA.

[4]  Michael I. Jordan,et al.  Graphical Models, Exponential Families, and Variational Inference , 2008, Found. Trends Mach. Learn..

[5]  J. Vincent,et al.  Multicenter, randomized, controlled trials evaluating mortality in intensive care: Doomed to fail? , 2008, Critical care medicine.

[6]  Jeffrey McCullough,et al.  Dose of prophylactic platelet transfusions and prevention of hemorrhage. , 2010, The New England journal of medicine.

[7]  David B Hoyt,et al.  Transfusion of plasma, platelets, and red blood cells in a 1:1:1 vs a 1:1:2 ratio and mortality in patients with severe trauma: the PROPPR randomized clinical trial. , 2015, JAMA.

[8]  M. Meade,et al.  Blood Pressure Targets For Vasopressor Therapy: A Systematic Review , 2015, Shock.

[9]  Li Wei,et al.  Experiencing SAX: a novel symbolic representation of time series , 2007, Data Mining and Knowledge Discovery.

[10]  M. Müllner,et al.  Vasopressors for shock. , 2004, The Cochrane database of systematic reviews.

[11]  Gaël Varoquaux,et al.  Scikit-learn: Machine Learning in Python , 2011, J. Mach. Learn. Res..

[12]  Ram Akella,et al.  Dynamically Modeling Patient's Health State from Electronic Medical Records: A Time Series Approach , 2015, KDD.

[13]  J. Vincent,et al.  The SOFA (Sepsis-related Organ Failure Assessment) score to describe organ dysfunction/failure , 1996, Intensive Care Medicine.

[14]  Amy T. Wang,et al.  The effect of plasma transfusion on morbidity and mortality: a systematic review and meta‐analysis , 2010, Transfusion.

[15]  Zoubin Ghahramani,et al.  An Introduction to Hidden Markov Models and Bayesian Networks , 2001, Int. J. Pattern Recognit. Artif. Intell..

[16]  M M Cohen,et al.  A multivariable model for predicting the need for blood transfusion in patients undergoing first‐time elective coronary bypass graft surgery , 2001, Transfusion.

[17]  Shamim Nemati,et al.  A Physiological Time Series Dynamics-Based Approach to Patient Monitoring and Outcome Prediction , 2014, IEEE Journal of Biomedical and Health Informatics.

[18]  L. Celi,et al.  Disease-based Modeling to Predict Fluid Response in Intensive Care Units , 2013, Methods of Information in Medicine.

[19]  M. West,et al.  An analysis of international exchange rates using multivariate DLM's , 1987 .

[20]  Alex Bateman,et al.  An introduction to hidden Markov models. , 2007, Current protocols in bioinformatics.

[21]  Michael Bailey,et al.  Dynamic lactate indices as predictors of outcome in critically ill patients , 2011, Critical care.

[22]  Peter Szolovits,et al.  Understanding vasopressor intervention and weaning: risk prediction in a public heterogeneous clinical time series database , 2017, J. Am. Medical Informatics Assoc..

[23]  S. L. Scott Bayesian Methods for Hidden Markov Models , 2002 .

[24]  R. Mark,et al.  An investigation of patterns in hemodynamic data indicative of impending hypotension in intensive care , 2010, Biomedical engineering online.

[25]  M. Tobin,et al.  A prospective study of indexes predicting the outcome of trials of weaning from mechanical ventilation. , 1992, The New England journal of medicine.

[26]  S. Brunskill,et al.  Is fresh frozen plasma clinically effective? A systematic review of randomized controlled trials , 2004, British journal of haematology.

[27]  W B Schwartz,et al.  Characterization and clinical application of the "significance band" for acute respiratory alkalosis. , 1969, The New England journal of medicine.

[28]  S. Walczak,et al.  Artificial neural network medical decision support tool: predicting transfusion requirements of ER patients , 2005, IEEE Transactions on Information Technology in Biomedicine.

[29]  Emily B. Fox,et al.  Bayesian nonparametric learning of complex dynamical phenomena , 2009 .

[30]  J. Vincent Critical care - where have we been and where are we going? , 2013, Critical Care.

[31]  F. Lemaire,et al.  Principles and practice of mechanical ventilation , 1995, Intensive Care Medicine.

[32]  Michael Bailey,et al.  Relative hyperlactatemia and hospital mortality in critically ill patients: a retrospective multi-centre study , 2010, Critical care.

[33]  Christian Weyer,et al.  High white blood cell count is associated with a worsening of insulin sensitivity and predicts the development of type 2 diabetes. , 2002, Diabetes.

[34]  Anna Rumshisky,et al.  Unfolding physiological state: mortality modelling in intensive care units , 2014, KDD.

[35]  Peter Szolovits,et al.  MIMIC-III, a freely accessible critical care database , 2016, Scientific Data.

[36]  Henry E Wang,et al.  Urine Output Changes During Postcardiac Arrest Therapeutic Hypothermia. , 2013, Therapeutic hypothermia and temperature management.

[37]  W. Knaus,et al.  The APACHE III prognostic system. Risk prediction of hospital mortality for critically ill hospitalized adults. , 1991, Chest.

[38]  Uri Shalit,et al.  Deep Kalman Filters , 2015, ArXiv.

[39]  John A. Quinn,et al.  Factorial Switching Linear Dynamical Systems Applied to Physiological Condition Monitoring , 2009, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[40]  Yan Liu,et al.  Deep Computational Phenotyping , 2015, KDD.

[41]  Peter Szolovits,et al.  Prognostic Physiology: Modeling Patient Severity in Intensive Care Units Using Radial Domain Folding , 2012, AMIA.

[42]  Peter Szolovits,et al.  A Multivariate Timeseries Modeling Approach to Severity of Illness Assessment and Forecasting in ICU with Sparse, Heterogeneous Clinical Data , 2015, AAAI.

[43]  P. Pronovost,et al.  A targeted real-time early warning score (TREWScore) for septic shock , 2015, Science Translational Medicine.

[44]  P. Marik,et al.  Efficacy of red blood cell transfusion in the critically ill: A systematic review of the literature* , 2008, Critical care medicine.

[45]  Matthew J. Beal Variational algorithms for approximate Bayesian inference , 2003 .