Systems immunology: just getting started
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[1] A Tikhonov,et al. Solution of Incorrectly Formulated Problems and the Regularization Method , 1963 .
[2] R. Tibshirani. Regression Shrinkage and Selection via the Lasso , 1996 .
[3] E. Gold,et al. Isolation and characterization of monoclonal antibodies directed against novel components of macrophage phagosomes. , 1999, Journal of cell science.
[4] Mark M. Davis,et al. Direct observation of ligand recognition by T cells , 2002, Nature.
[5] Alan Aderem,et al. Phagocytosis and the inflammatory response. , 2003, The Journal of infectious diseases.
[6] D. Pe’er,et al. Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data , 2003, Nature Genetics.
[7] Michael E Phelps,et al. Systems Biology and New Technologies Enable Predictive and Preventative Medicine , 2004, Science.
[8] H. Zou,et al. Regularization and variable selection via the elastic net , 2005 .
[9] Cécile Viboud,et al. Antibody response to influenza vaccination in the elderly: a quantitative review. , 2006, Vaccine.
[10] Mark M Davis,et al. A prescription for human immunology. , 2008, Immunity.
[11] Bastian R. Angermann,et al. Yellow fever vaccine induces integrated multilineage and polyfunctional immune responses , 2008, The Journal of experimental medicine.
[12] Virginia Pascual,et al. A modular analysis framework for blood genomics studies: application to systemic lupus erythematosus. , 2008, Immunity.
[13] M. Egholm,et al. Measurement and Clinical Monitoring of Human Lymphocyte Clonality by Massively Parallel V-D-J Pyrosequencing , 2009, Science Translational Medicine.
[14] Bali Pulendran,et al. Learning immunology from the yellow fever vaccine: innate immunity to systems vaccinology , 2009, Nature Reviews Immunology.
[15] Eva K. Lee,et al. Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans , 2009, Nature Immunology.
[16] N. Weng,et al. CD28(-) T cells: their role in the age-associated decline of immune function. , 2009, Trends in immunology.
[17] R. White,et al. High-Throughput Sequencing of the Zebrafish Antibody Repertoire , 2009, Science.
[18] Mark M. Davis,et al. Cell type–specific gene expression differences in complex tissues , 2010, Nature Methods.
[19] Yingdong Zhao,et al. Gene expression deconvolution in clinical samples , 2010, Genome Medicine.
[20] Eva K. Lee,et al. Systems Biology of Seasonal Influenza Vaccination in Humans , 2011, Nature Immunology.
[21] Sean C. Bendall,et al. Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum , 2011, Science.
[22] Richard A. Moore,et al. Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes. , 2011, Genome research.
[23] Sean C. Bendall,et al. Extracting a Cellular Hierarchy from High-dimensional Cytometry Data with SPADE , 2011, Nature Biotechnology.
[24] Zhandong Liu,et al. Gene expression deconvolution in linear space , 2011, Nature Methods.
[25] Sean C. Bendall,et al. From single cells to deep phenotypes in cancer , 2012, Nature Biotechnology.
[26] Sean C. Bendall,et al. Cytometry by time-of-flight shows combinatorial cytokine expression and virus-specific cell niches within a continuum of CD8+ T cell phenotypes. , 2012, Immunity.
[27] Mark M Davis,et al. Dietary gluten triggers concomitant activation of CD4+ and CD8+ αβ T cells and γδ T cells in celiac disease , 2013, Proceedings of the National Academy of Sciences.
[28] Gary E. Swan,et al. Genetic and Environmental Determinants of Human NK Cell Diversity Revealed by Mass Cytometry , 2013, Science Translational Medicine.
[29] Mark M Davis,et al. A single peptide-major histocompatibility complex ligand triggers digital cytokine secretion in CD4(+) T cells. , 2013, Immunity.
[30] Kelly Domico,et al. Systems scale interactive exploration reveals quantitative and qualitative differences in response to influenza and pneumococcal vaccines. , 2013, Immunity.
[31] Mark M. Davis,et al. Systems analysis of sex differences reveals an immunosuppressive role for testosterone in the response to influenza vaccination , 2013, Proceedings of the National Academy of Sciences.
[32] S. Shen-Orr,et al. Computational deconvolution: extracting cell type-specific information from heterogeneous samples. , 2013, Current opinion in immunology.
[33] M. Stratton,et al. Tumor exome analysis reveals neoantigen-specific T-cell reactivity in an ipilimumab-responsive melanoma. , 2013, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.
[34] Mark M. Davis,et al. Characterization of Influenza Vaccine Immunogenicity Using Influenza Antigen Microarrays , 2013, PloS one.
[35] Mark M Davis,et al. Combinatorial tetramer staining and mass cytometry analysis facilitate T-cell epitope mapping and characterization , 2013, Nature Biotechnology.
[36] J. Casanova,et al. Discovery of single-gene inborn errors of immunity by next generation sequencing. , 2014, Current opinion in immunology.
[37] Helder I Nakaya,et al. TLR5-mediated sensing of gut microbiota is necessary for antibody responses to seasonal influenza vaccination. , 2014, Immunity.
[38] F. Lienert,et al. Synthetic biology in mammalian cells: next generation research tools and therapeutics , 2014, Nature Reviews Molecular Cell Biology.
[39] Mark M. Davis,et al. Apoptosis and other immune biomarkers predict influenza vaccine responsiveness , 2014, Molecular Systems Biology.
[40] Shuzhao Li,et al. Vaccine Activation of the Nutrient Sensor GCN2 in Dendritic Cells Enhances Antigen Presentation , 2014, Science.
[41] Mark M. Davis,et al. Human responses to influenza vaccination show seroconversion signatures and convergent antibody rearrangements. , 2014, Cell host & microbe.
[42] E. Schadt,et al. Unifying immunology with informatics and multiscale biology , 2014, Nature Immunology.
[43] Rodolphe Thiébaut,et al. Dendritic cell‐based therapeutic vaccine elicits polyfunctional HIV‐specific T‐cell immunity associated with control of viral load , 2014, European journal of immunology.
[44] Stuart B. Goodman,et al. Clinical recovery from surgery correlates with single-cell immune signatures , 2014, Science Translational Medicine.
[45] Mark M Davis,et al. Linking T-cell receptor sequence to functional phenotype at the single-cell level , 2014, Nature Biotechnology.
[46] Richard A. Olshen,et al. Diversity and clonal selection in the human T-cell repertoire , 2014, Proceedings of the National Academy of Sciences.
[47] Maxim N. Artyomov,et al. Checkpoint Blockade Cancer Immunotherapy Targets Tumour-Specific Mutant Antigens , 2014, Nature.
[48] Ruth R. Montgomery,et al. CyTOF supports efficient detection of immune cell subsets from small samples. , 2014, Journal of immunological methods.
[49] Atul J. Butte,et al. Variation in the Human Immune System Is Largely Driven by Non-Heritable Influences , 2015, Cell.
[50] Mary M. Cavanagh,et al. Naive T Cell Maintenance and Function in Human Aging , 2015, The Journal of Immunology.
[51] J. Casanova. Severe infectious diseases of childhood as monogenic inborn errors of immunity , 2015, Proceedings of the National Academy of Sciences.
[52] Daniela Latorre,et al. Functional heterogeneity of human memory CD4+ T cell clones primed by pathogens or vaccines , 2015, Science.
[53] Mark M. Davis,et al. New approaches to understanding the immune response to vaccination and infection. , 2015, Vaccine.
[54] W. Robinson. Sequencing the functional antibody repertoire—diagnostic and therapeutic discovery , 2015, Nature Reviews Rheumatology.
[55] Purvesh Khatri,et al. Integrated, Multi-cohort Analysis Identifies Conserved Transcriptional Signatures across Multiple Respiratory Viruses , 2015, Immunity.
[56] Mark M. Davis,et al. Clonal Deletion Prunes but Does Not Eliminate Self-Specific αβ CD8(+) T Lymphocytes. , 2015, Immunity.
[57] D. Furman. Sexual dimorphism in immunity: improving our understanding of vaccine immune responses in men , 2015, Expert review of vaccines.
[58] J. Wolchok,et al. Genetic Basis for Clinical Response to CTLA-4 Blockade in Melanoma. , 2015, The New England journal of medicine.
[59] J. Casanova. Human genetic basis of interindividual variability in the course of infection , 2015, Proceedings of the National Academy of Sciences.
[60] Ash A. Alizadeh,et al. Robust enumeration of cell subsets from tissue expression profiles , 2015, Nature Methods.
[61] Thomas M. Norman,et al. Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens , 2016, Cell.
[62] J. Banchereau,et al. The Human Vaccines Project: A roadmap for cancer vaccine development , 2016, Science Translational Medicine.
[63] Michael T. Zimmermann,et al. GENE SIGNATURES ASSOCIATED WITH ADAPTIVE HUMORAL IMMUNITY FOLLOWING SEASONAL INFLUENZA A/H1N1 VACCINATION , 2016, Genes and Immunity.
[64] Li Wang,et al. Disease-specific classification using deconvoluted whole blood gene expression , 2016, Scientific Reports.
[65] Virginia Pascual,et al. Personalized Immunomonitoring Uncovers Molecular Networks that Stratify Lupus Patients , 2016, Cell.
[66] Purvesh Khatri,et al. Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis. , 2016, The Lancet. Respiratory medicine.
[67] Patricia A. Lovelace,et al. Defective Signaling in the JAK-STAT Pathway Tracks with Chronic Inflammation and Cardiovascular Risk in Aging Humans. , 2016, Cell systems.
[68] I. Amit,et al. Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq , 2016, Cell.
[69] Michael T. Zimmermann,et al. Whole Transcriptome Profiling Identifies CD93 and Other Plasma Cell Survival Factor Genes Associated with Measles-Specific Antibody Response after Vaccination , 2016, PloS one.
[70] Patient-Specific Immune States Before Surgery Are Strong Correlates of Surgical Recovery , 2016 .
[71] Anneliese O. Speak,et al. T cell fate and clonality inference from single cell transcriptomes , 2016, Nature Methods.
[72] Daniel E. Zak,et al. A prospective blood RNA signature for tuberculosis disease risk , 2016, The Lancet.
[73] Catherine A. Blish,et al. Application of Mass Cytometry (CyTOF) for Functional and Phenotypic Analysis of Natural Killer Cells. , 2016, Methods in molecular biology.
[74] André F. Rendeiro,et al. Pooled CRISPR screening with single-cell transcriptome read-out , 2016, bioRxiv.
[75] Michael T. Zimmermann,et al. Transcriptional signatures of influenza A/H1N1-specific IgG memory-like B cell response in older individuals. , 2016, Vaccine.
[76] N. McGovern,et al. Human Innate Lymphoid Cell Subsets Possess Tissue‐Type Based Heterogeneity in Phenotype and Frequency , 2017, Immunity.
[77] Junlei Chang,et al. Expression of specific inflammasome gene modules stratifies older individuals into two extreme clinical and immunological states , 2017, Nature Medicine.
[78] Sean C. Bendall,et al. Systemic Immunity Is Required for Effective Cancer Immunotherapy , 2017, Cell.
[79] Eva K. Lee,et al. Systems analysis of protective immune responses to RTS,S malaria vaccination in humans , 2017, Proceedings of the National Academy of Sciences.
[80] Yuxin Sun,et al. Feature selection using a one dimensional naïve Bayes’ classifier increases the accuracy of support vector machine classification of CDR3 repertoires , 2017, Bioinform..
[81] Mark M. Davis,et al. Multicenter Systems Analysis of Human Blood Reveals Immature Neutrophils in Males and During Pregnancy , 2017, The Journal of Immunology.
[82] Benjamin Chain,et al. High-throughput sequencing of the T-cell receptor repertoire: pitfalls and opportunities , 2017, Briefings Bioinform..
[83] Yannick Simoni,et al. Human Innate Lymphoid Cell Subsets Possess Tissue-Type Based Heterogeneity in Phenotype and Frequency. , 2018, Immunity.
[84] Sandra Romero-Steiner,et al. Molecular signatures of antibody responses derived from a systems biology study of five human vaccines , 2022 .