Identification of proximal 1p36 deletions using array‐CGH: a possible new syndrome

Monosomy 1p36 is the most common terminal deletion syndrome with an estimated occurrence of 1:5000 live births. Typically, the deletions span <10 Mb of 1pter‐1p36.23 and result in mental retardation, developmental delay, sensorineural hearing loss, seizures, cardiomyopathy and cardiovascular malformations, and distinct facies including large anterior fontanel, deep‐set eyes, straight eyebrows, flat nasal bridge, asymmetric ears, and pointed chin. We report five patients with ‘atypical’ proximal interstitial deletions from 1p36.23‐1p36.11 using array‐comparative genomic hybridization. Four patients carry large overlapping deletions of ∼9.38–14.69 Mb in size, and one patient carries a small 2.97 Mb deletion. Interestingly, these patients manifest many clinical characteristics that are different from those seen in ‘classical’ monosomy 1p36 syndrome. The clinical presentation in our patients included: pre‐ and post‐natal growth deficiency (mostly post‐natal), feeding difficulties, seizures, developmental delay, cardiovascular malformations, microcephaly, limb anomalies, and dysmorphic features including frontal and parietal bossing, abnormally shaped and posteriorly rotated ears, hypertelorism, arched eyebrows, and prominent and broad nose. Most children also displayed hirsutism. Based on the analysis of the clinical and molecular data from our patients and those reported in the literature, we suggest that this chromosomal abnormality may constitute yet another deletion syndrome distinct from the classical distal 1p36 deletion syndrome.

[1]  Z. Ou,et al.  Clinical Implementation of Chromosomal Microarray Analysis: Summary of 2513 Postnatal Cases , 2007, PloS one.

[2]  H. Vogel,et al.  CHD5 Is a Tumor Suppressor at Human 1p36 , 2007, Cell.

[3]  L. Shaffer,et al.  Characterization of a complex rearrangement with interstitial deletions and inversion on human chromosome 1 , 2006, Chromosome Research.

[4]  Chad A Shaw,et al.  Development and validation of a CGH microarray for clinical cytogenetic diagnosis , 2005, Genetics in Medicine.

[5]  Yonatan Aumann,et al.  Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis , 2005, RECOMB.

[6]  S. Gregory,et al.  Definition and characterization of a region of 1p36.3 consistently deleted in neuroblastoma , 2005, Oncogene.

[7]  R. Redon,et al.  Tiling path resolution mapping of constitutional 1p36 deletions by array-CGH: contiguous gene deletion or “deletion with positional effect” syndrome? , 2005, Journal of Medical Genetics.

[8]  L. D. White,et al.  Comparative genomic hybridisation using a proximal 17p BAC/PAC array detects rearrangements responsible for four genomic disorders , 2004, Journal of Medical Genetics.

[9]  Ľ. Kádasi,et al.  De novo deletion 1p(34→pter) , 2004, Human Genetics.

[10]  Ľ. Kádasi,et al.  De novo deletion 1p(34→pter) , 2004, Human Genetics.

[11]  L. Howard,et al.  Population data suggest that deletions of 1p36 are a relatively common chromosome abnormality , 2003, Clinical genetics.

[12]  L. Shaffer,et al.  Physical map of 1p36, placement of breakpoints in monosomy 1p36, and clinical characterization of the syndrome. , 2003, American journal of human genetics.

[13]  L. Shaffer,et al.  Molecular mechanisms for constitutional chromosomal rearrangements in humans. , 2000, Annual review of genetics.

[14]  L. Shaffer,et al.  Monosomy 1p36 , 1999, Journal of medical genetics.

[15]  L. Shaffer,et al.  Molecular refinement of the 1p36 deletion syndrome reveals size diversity and a preponderance of maternally derived deletions. , 1999, Human molecular genetics.

[16]  L. Shaffer,et al.  Chromosome 1p36 deletions: the clinical phenotype and molecular characterization of a common newly delineated syndrome. , 1997, American journal of human genetics.

[17]  E. Zackai,et al.  Constitutional 1p36 deletion in a child with neuroblastoma. , 1993, American journal of human genetics.

[18]  H. Rivera,et al.  Pure trisomy 17q from a 17;21 translocation. , 1993, Genetic counseling.

[19]  F. Speleman,et al.  Constitutional translocation t(1;17)(p36;q12–21) in a patient with neuroblastoma , 1990, Genes, chromosomes & cancer.

[20]  M. Porteus,et al.  Deletion of chromosome 1p: a short review , 1990, Clinical genetics.

[21]  R. Mueller,et al.  Duplication of distal 17q from a maternal translocation: an additional case with some unique features. , 1989, Journal of medical genetics.

[22]  J. Opitz,et al.  Chromosome 3q duplication and the Brachmann-De Lange syndrome (BDLS). , 1979, The Journal of pediatrics.

[23]  Golder N Wilson,et al.  The association of chromosome 3 duplication and the Cornelia de Lange syndrome. , 1978, The Journal of pediatrics.