Characterization of a natural triple-tandem c-di-GMP riboswitch and application of the riboswitch-based dual-fluorescence reporter
暂无分享,去创建一个
[1] K. Sauer. c-di-GMP Signaling , 2017, Methods in Molecular Biology.
[2] F. Cutruzzolà,et al. Novel genetic tools to tackle c‐di‐GMP‐dependent signalling in Pseudomonas aeruginosa , 2016, Journal of applied microbiology.
[3] A. Mazur,et al. Expression and Genetic Activation of Cyclic Di-GMP-Specific Phosphodiesterases in Escherichia coli , 2015, Journal of bacteriology.
[4] Michael Y. Galperin,et al. Diversity of Cyclic Di-GMP-Binding Proteins and Mechanisms , 2015, Journal of bacteriology.
[5] Xun Wang,et al. Functional analysis of the sporulation-specific diadenylate cyclase CdaS in Bacillus thuringiensis , 2015, Front. Microbiol..
[6] Fei Liu,et al. A label-free and self-assembled electrochemical biosensor for highly sensitive detection of cyclic diguanylate monophosphate (c-di-GMP) based on RNA riboswitch. , 2015, Analytica chimica acta.
[7] A. Herr,et al. A minimalist biosensor: Quantitation of cyclic di-GMP using the conformational change of a riboswitch aptamer , 2015, RNA biology.
[8] Xinfeng Li,et al. Functional Analysis of a c-di-AMP-specific Phosphodiesterase MsPDE from Mycobacterium smegmatis , 2015, International journal of biological sciences.
[9] Ronny Lorenz,et al. Design criteria for synthetic riboswitches acting on transcription , 2015, RNA biology.
[10] S. Strobel,et al. Ligand binding by the tandem glycine riboswitch depends on aptamer dimerization but not double ligand occupancy , 2014, RNA.
[11] C. Dann,et al. Engineering of Bacillus subtilis Strains To Allow Rapid Characterization of Heterologous Diguanylate Cyclases and Phosphodiesterases , 2014, Applied and Environmental Microbiology.
[12] G. O’Toole,et al. Deletion Mutant Library for Investigation of Functional Outputs of Cyclic Diguanylate Metabolism in Pseudomonas aeruginosa PA14 , 2014, Applied and Environmental Microbiology.
[13] Jie Zhou,et al. E88, a new cyclic-di-GMP class I riboswitch aptamer from Clostridium tetani, has a similar fold to the prototypical class I riboswitch, Vc2, but differentially binds to c-di-GMP analogs. , 2014, Molecular bioSystems.
[14] Ziniu Yu,et al. High-Throughput Identification of Promoters and Screening of Highly Active Promoter-5′-UTR DNA Region with Different Characteristics from Bacillus thuringiensis , 2013, PloS one.
[15] M. Uyttendaele,et al. Diversity of Bacillus cereus group strains is reflected in their broad range of pathogenicity and diverse ecological lifestyles. , 2013, FEMS microbiology ecology.
[16] C. A. Kellenberger,et al. RNA-based fluorescent biosensors for live cell imaging of second messengers cyclic di-GMP and cyclic AMP-GMP. , 2013, Journal of the American Chemical Society.
[17] Michael Y. Galperin,et al. Cyclic di-GMP: the First 25 Years of a Universal Bacterial Second Messenger , 2013, Microbiology and Molecular Reviews.
[18] Ziniu Yu,et al. The Metabolic Regulation of Sporulation and Parasporal Crystal Formation in Bacillus thuringiensis Revealed by Transcriptomics and Proteomics* , 2013, Molecular & Cellular Proteomics.
[19] A. Serganov,et al. A Decade of Riboswitches , 2013, Cell.
[20] H. Mobley,et al. Enzymatically Active and Inactive Phosphodiesterases and Diguanylate Cyclases Are Involved in Regulation of Motility or Sessility in Escherichia coli CFT073 , 2012, mBio.
[21] Jie Zhou,et al. Nanomolar fluorescent detection of c-di-GMP using a modular aptamer strategy. , 2012, Chemical communications.
[22] H. Sondermann,et al. Sensing the messenger: The diverse ways that bacteria signal through c‐di‐GMP , 2012, Protein science : a publication of the Protein Society.
[23] D. Chatterji,et al. A full-length bifunctional protein involved in c-di-GMP turnover is required for long-term survival under nutrient starvation in Mycobacterium smegmatis. , 2012, Microbiology.
[24] Ronald R. Breaker,et al. Engineered allosteric ribozymes that sense the bacterial second messenger cyclic diguanosyl 5'-monophosphate. , 2012, Analytical chemistry.
[25] T. Tolker-Nielsen,et al. Fluorescence-Based Reporter for Gauging Cyclic Di-GMP Levels in Pseudomonas aeruginosa , 2012, Applied and Environmental Microbiology.
[26] C. Waters,et al. Cyclic Diguanylate Inversely Regulates Motility and Aggregation in Clostridium difficile , 2012, Journal of bacteriology.
[27] H. Sondermann,et al. You've come a long way: c-di-GMP signaling. , 2012, Current opinion in microbiology.
[28] R. Breaker. Riboswitches and the RNA world. , 2012, Cold Spring Harbor perspectives in biology.
[29] R. Breaker. Prospects for riboswitch discovery and analysis. , 2011, Molecular cell.
[30] Roger A. Jones,et al. Differential analogue binding by two classes of c-di-GMP riboswitches. , 2011, Journal of the American Chemical Society.
[31] Samuel I. Miller,et al. The bacterial second messenger c‐di‐GMP: mechanisms of signalling , 2011, Cellular microbiology.
[32] Peter D. Newell,et al. Systematic Analysis of Diguanylate Cyclases That Promote Biofilm Formation by Pseudomonas fluorescens Pf0-1 , 2011, Journal of bacteriology.
[33] Ziniu Yu,et al. Complete Genome Sequence of Bacillus thuringiensis subsp. chinensis Strain CT-43 , 2011, Journal of bacteriology.
[34] Kathryn D. Smith,et al. Structural basis of differential ligand recognition by two classes of bis-(3′-5′)-cyclic dimeric guanosine monophosphate-binding riboswitches , 2011, Proceedings of the National Academy of Sciences.
[35] M. Buttner,et al. Identification and Characterization of CdgB, a Diguanylate Cyclase Involved in Developmental Processes in Streptomyces coelicolor , 2011, Journal of bacteriology.
[36] Yong Xiong,et al. Structural basis of cooperative ligand binding by the glycine riboswitch. , 2011, Chemistry & biology.
[37] V. Burrus,et al. c-di-GMP Turn-Over in Clostridium difficile Is Controlled by a Plethora of Diguanylate Cyclases and Phosphodiesterases , 2011, PLoS genetics.
[38] A. Serganov,et al. Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch. , 2010, Molecular cell.
[39] Zasha Weinberg,et al. An Allosteric Self-Splicing Ribozyme Triggered by a Bacterial Second Messenger , 2010, Science.
[40] Matthias Christen,et al. Asymmetrical Distribution of the Second Messenger c-di-GMP upon Bacterial Cell Division , 2010, Science.
[41] Ziniu Yu,et al. Complete Genome Sequence of Bacillus thuringiensis Mutant Strain BMB171 , 2010, Journal of bacteriology.
[42] R. Seifert,et al. A liquid chromatography-coupled tandem mass spectrometry method for quantitation of cyclic di-guanosine monophosphate. , 2010, Journal of microbiological methods.
[43] X. Fang,et al. A post‐translational, c‐di‐GMP‐dependent mechanism regulating flagellar motility , 2010, Molecular microbiology.
[44] B. Raymond,et al. Bacillus thuringiensis: an impotent pathogen? , 2010, Trends in microbiology.
[45] Kathryn D. Smith,et al. Structural basis of ligand binding by a c-di-GMP riboswitch , 2009, Nature Structural &Molecular Biology.
[46] R. Breaker,et al. A variant riboswitch aptamer class for S-adenosylmethionine common in marine bacteria. , 2009, RNA.
[47] D. Chatterji,et al. Cyclic di-GMP: a second messenger required for long-term survival, but not for biofilm formation, in Mycobacterium smegmatis. , 2008, Microbiology.
[48] R. Breaker,et al. Riboswitches in Eubacteria Sense the Second Messenger Cyclic Di-GMP , 2008, Science.
[49] R. Breaker. Complex Riboswitches , 2008, Science.
[50] Scott A Strobel,et al. Chemical basis of glycine riboswitch cooperativity. , 2007, RNA.
[51] Catherine A. Wakeman,et al. Structure and Mechanism of a Metal-Sensing Regulatory RNA , 2007, Cell.
[52] R. Breaker,et al. Ligand binding and gene control characteristics of tandem riboswitches in Bacillus anthracis. , 2007, RNA.
[53] P. Serror,et al. C-Terminal WxL Domain Mediates Cell Wall Binding in Enterococcus faecalis and Other Gram-Positive Bacteria , 2006, Journal of bacteriology.
[54] Regine Hengge,et al. Cyclic‐di‐GMP‐mediated signalling within the σS network of Escherichia coli , 2006, Molecular microbiology.
[55] Jeffrey E. Barrick,et al. Tandem Riboswitch Architectures Exhibit Complex Gene Control Functions , 2006, Science.
[56] Matthias Christen,et al. Identification and Characterization of a Cyclic di-GMP-specific Phosphodiesterase and Its Allosteric Control by GTP* , 2005, Journal of Biological Chemistry.
[57] C. Yanofsky,et al. New insights into regulation of the tryptophan biosynthetic operon in Gram-positive bacteria. , 2005, Trends in genetics : TIG.
[58] Hyungtae Kim,et al. The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice , 2005, Nucleic acids research.
[59] B. Giese,et al. Structural basis of activity and allosteric control of diguanylate cyclase. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[60] Jeffrey E. Barrick,et al. New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[61] Jeffrey E. Barrick,et al. Coenzyme B12 riboswitches are widespread genetic control elements in prokaryotes. , 2004, Nucleic acids research.
[62] Dan Mercola,et al. A Glycine-Dependent Riboswitch That Uses Cooperative Binding to Control Gene Expression , 2004 .
[63] Michael Zuker,et al. Mfold web server for nucleic acid folding and hybridization prediction , 2003, Nucleic Acids Res..
[64] Patrick Goymer,et al. Role of the GGDEF regulator PleD in polar development of Caulobacter crescentus , 2003, Molecular microbiology.
[65] Sean R. Eddy,et al. Rfam: an RNA family database , 2003, Nucleic Acids Res..
[66] M. Ehrenberg,et al. Activities of constitutive promoters in Escherichia coli. , 1999, Journal of molecular biology.
[67] J. SantaLucia,et al. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[68] O. Schneewind,et al. Proteolytic cleavage and cell wall anchoring at the LPXTG motif of surface proteins in Gram‐positive bacteria , 1994, Molecular microbiology.
[69] D. Amikam,et al. Cyclic diguanylic acid and cellulose synthesis in Agrobacterium tumefaciens , 1989, Journal of bacteriology.