Structure of bone morphogenetic protein 9 procomplex

Significance Bone morphogenetic protein (BMP) activity is regulated by prodomains. Here, structures of BMP procomplexes reveal an open-armed conformation. In contrast, the evolutionarily related, latent TGF-β1 procomplex is cross-armed. We propose that in the TGF-β and BMP family, conversion between cross-armed and open-armed conformations may regulate release and activity of the growth factor. Bone morphogenetic proteins (BMPs) belong to the TGF-β family, whose 33 members regulate multiple aspects of morphogenesis. TGF-β family members are secreted as procomplexes containing a small growth factor dimer associated with two larger prodomains. As isolated procomplexes, some members are latent, whereas most are active; what determines these differences is unknown. Here, studies on pro-BMP structures and binding to receptors lead to insights into mechanisms that regulate latency in the TGF-β family and into the functions of their highly divergent prodomains. The observed open-armed, nonlatent conformation of pro-BMP9 and pro-BMP7 contrasts with the cross-armed, latent conformation of pro-TGF-β1. Despite markedly different arm orientations in pro-BMP and pro-TGF-β, the arm domain of the prodomain can similarly associate with the growth factor, whereas prodomain elements N- and C-terminal to the arm associate differently with the growth factor and may compete with one another to regulate latency and stepwise displacement by type I and II receptors. Sequence conservation suggests that pro-BMP9 can adopt both cross-armed and open-armed conformations. We propose that interactors in the matrix stabilize a cross-armed pro-BMP conformation and regulate transition between cross-armed, latent and open-armed, nonlatent pro-BMP conformations.

[1]  D. Constam Regulation of TGFβ and related signals by precursor processing. , 2014, Seminars in cell & developmental biology.

[2]  P. S. Kim,et al.  A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants. , 1993, Science.

[3]  A. Kotzsch,et al.  Crystal structure analysis reveals how the Chordin family member crossveinless 2 blocks BMP-2 receptor binding. , 2008, Developmental cell.

[4]  Collaborative Computational,et al.  The CCP4 suite: programs for protein crystallography. , 1994, Acta crystallographica. Section D, Biological crystallography.

[5]  A. Grinberg,et al.  Specificity and Structure of a High Affinity Activin Receptor-like Kinase 1 (ALK1) Signaling Complex , 2012, The Journal of Biological Chemistry.

[6]  T. Walz,et al.  Functional and structural stability of the epidermal growth factor receptor in detergent micelles and phospholipid nanodiscs. , 2008, Biochemistry.

[7]  C. Harrison,et al.  Prodomains regulate the synthesis, extracellular localisation and activity of TGF-β superfamily ligands , 2011, Growth factors.

[8]  M. V. Dinther,et al.  BMP-9 signals via ALK1 and inhibits bFGF-induced endothelial cell proliferation and VEGF-stimulated angiogenesis , 2007, Journal of Cell Science.

[9]  T. Martin,et al.  Functional properties of hormonally responsive cultured normal and malignant rat osteoblastic cells. , 1981, Endocrinology.

[10]  L. David,et al.  Emerging role of bone morphogenetic proteins in angiogenesis. , 2009, Cytokine & growth factor reviews.

[11]  K. Lyons,et al.  A new model for growth factor activation: type II receptors compete with the prodomain for BMP-7. , 2008, Journal of molecular biology.

[12]  V. Rosen,et al.  Identification of transforming growth factor beta family members present in bone-inductive protein purified from bovine bone. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[13]  T. Nakayama,et al.  The activity and signaling range of mature BMP-4 is regulated by sequential cleavage at two sites within the prodomain of the precursor. , 2001, Genes & development.

[14]  A. Goldberg,et al.  Identification of a Novel Pool of Extracellular Pro-myostatin in Skeletal Muscle* , 2008, Journal of Biological Chemistry.

[15]  P. Andrew Karplus,et al.  Linking Crystallographic Model and Data Quality , 2012, Science.

[16]  T. Akiyama,et al.  A Large Bioactive BMP Ligand with Distinct Signaling Properties Is Produced by Alternative Proconvertase Processing , 2012, Science Signaling.

[17]  W Chiu,et al.  EMAN: semiautomated software for high-resolution single-particle reconstructions. , 1999, Journal of structural biology.

[18]  T. Walz,et al.  Latent TGF-β structure and activation , 2011, Nature.

[19]  Kevin Cowtan,et al.  research papers Acta Crystallographica Section D Biological , 2005 .

[20]  D. Keene,et al.  The Prodomain of BMP-7 Targets the BMP-7 Complex to the Extracellular Matrix* , 2005, Journal of Biological Chemistry.

[21]  M. Gerstein,et al.  The morph server: a standardized system for analyzing and visualizing macromolecular motions in a database framework. , 2000, Nucleic acids research.

[22]  S. Warming,et al.  Context-dependent signaling defines roles of BMP9 and BMP10 in embryonic and postnatal development , 2013, Proceedings of the National Academy of Sciences.

[23]  Brendan D. O'Fallon,et al.  BMP9 mutations cause a vascular-anomaly syndrome with phenotypic overlap with hereditary hemorrhagic telangiectasia. , 2013, American journal of human genetics.

[24]  A Leith,et al.  SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields. , 1996, Journal of structural biology.

[25]  N. McDonald,et al.  Assay of Bone Morphogenetic Protein-2, -4, and -7 in Human Demineralized Bone Matrix , 2006, The Journal of craniofacial surgery.

[26]  N. Solban,et al.  Soluble Endoglin Specifically Binds Bone Morphogenetic Proteins 9 and 10 via Its Orphan Domain, Inhibits Blood Vessel Formation, and Suppresses Tumor Growth* , 2011, The Journal of Biological Chemistry.

[27]  K Henrick,et al.  Electronic Reprint Biological Crystallography Secondary-structure Matching (ssm), a New Tool for Fast Protein Structure Alignment in Three Dimensions Biological Crystallography Secondary-structure Matching (ssm), a New Tool for Fast Protein Structure Alignment in Three Dimensions , 2022 .

[28]  V. Rosen,et al.  Purification and characterization of other distinct bone-inducing factors. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[29]  Annik Prat,et al.  The biology and therapeutic targeting of the proprotein convertases , 2012, Nature Reviews Drug Discovery.

[30]  Mallika Singh,et al.  Crystal Structure of BMP-9 and Functional Interactions with Pro-region and Receptors* , 2005, Journal of Biological Chemistry.

[31]  Takako Sasaki,et al.  Prodomains of transforming growth factor beta (TGFbeta) superfamily members specify different functions: extracellular matrix interactions and growth factor bioavailability. , 2011, The Journal of biological chemistry.

[32]  W. Denny,et al.  CRYSTALLOGRAPHY OF BIOLOGICAL MACROMOLECULES , 2005 .

[33]  Takako Sasaki,et al.  Targeting of Bone Morphogenetic Protein Growth Factor Complexes to Fibrillin* , 2008, Journal of Biological Chemistry.

[34]  F. Luyten,et al.  Purification and partial amino acid sequence of osteogenin, a protein initiating bone differentiation. , 1989, The Journal of biological chemistry.

[35]  K. Sekiguchi,et al.  Activin A Binds to Perlecan through Its Pro-region That Has Heparin/Heparan Sulfate Binding Activity* , 2010, The Journal of Biological Chemistry.

[36]  L. David,et al.  BMP9 is produced by hepatocytes and circulates mainly in an active mature form complexed to its prodomain , 2012, Cellular and molecular life sciences : CMLS.

[37]  Randy J. Read,et al.  Acta Crystallographica Section D Biological , 2003 .

[38]  V. Rosen,et al.  Responsiveness of clonal limb bud cell lines to bone morphogenetic protein 2 reveals a sequential relationship between cartilage and bone cell phenotypes , 1994, Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research.

[39]  Thomas Walz,et al.  Simultaneous visualization of the extracellular and cytoplasmic domains of the epidermal growth factor receptor , 2011, Nature Structural &Molecular Biology.