The Role of PIWI and the miRNA Machinery in Drosophila Germline Determination

BACKGROUND The germ plasm has long been demonstrated to be necessary and sufficient for germline determination, with translational regulation playing a key role in the process. Beyond this, little is known about molecular activities underlying germline determination. RESULTS We report the function of Drosophila PIWI, DICER-1, and dFMRP (Fragile X Mental Retardation Protein) in germline determination. PIWI is a maternal component of the polar granule, a germ-plasm-specific organelle essential for germline specification. Depleting maternal PIWI does not affect OSK or VASA expression or abdominal patterning but leads to failure in pole-plasm maintenance and primordial-germ-cell (PGC) formation, whereas doubling and tripling the maternal piwi dose increases OSK and VASA levels correspondingly and doubles and triples the number of PGCs, respectively. Moreover, PIWI forms a complex with dFMRP and DICER-1, but not with DICER-2, in polar-granule-enriched fractions. Depleting DICER-1, but not DICER-2, also leads to a severe pole-plasm defect and a reduced PGC number. These effects are also seen, albeit to a lesser extent, for dFMRP, another component of the miRISC complex. CONCLUSIONS Because DICER-1 is required for the miRNA pathway and DICER-2 is required for the siRNA pathway yet neither is required for the rasiRNA pathway, our data implicate a crucial role of the PIWI-mediated miRNA pathway in regulating the levels of OSK, VASA, and possibly other genes involved in germline determination in Drosophila.

[1]  T. Jongens,et al.  Transcriptional silencing and translational control: key features of early germline development. , 2003, BioEssays : news and reviews in molecular, cellular and developmental biology.

[2]  A. Mahowald,et al.  Transplantation of posterior polar plasm in Drosophila. Induction of germ cells at the anterior pole of the egg. , 1974, Proceedings of the National Academy of Sciences of the United States of America.

[3]  C. Wylie,et al.  Germ Cells , 1999, Cell.

[4]  P. Macdonald Translational Control: A Cup Half Full , 2004, Current Biology.

[5]  J. Castle,et al.  Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs , 2005, Nature.

[6]  K. Siwicki,et al.  Drosophila Lacking dfmr1 Activity Show Defects in Circadian Output and Fail to Maintain Courtship Interest , 2002, Neuron.

[7]  Ruth Lehmann,et al.  Induction of germ cell formation by oskar , 1992, Nature.

[8]  M. Siomi,et al.  A Drosophila fragile X protein interacts with components of RNAi and ribosomal proteins. , 2002, Genes & development.

[9]  A. Mahowald Fine structure of pole cells and polar granules in Drosophila melanogaster , 1962 .

[10]  P. Lasko,et al.  Requirement for a Noncoding RNA in Drosophila Polar Granules for Germ Cell Establishment , 1996, Science.

[11]  Ruth Lehmann,et al.  Abdominal segmentation, pole cell formation, and embryonic polarity require the localized activity of oskar, a maternal gene in drosophila , 1986, Cell.

[12]  M. Jacobs-Lorena,et al.  Developmental Regulation of bicoid mRNA Stability Is Mediated by the First 43 Nucleotides of the 3′ Untranslated Region , 1998, Molecular and Cellular Biology.

[13]  A. Pasquinelli,et al.  Regulation by let-7 and lin-4 miRNAs Results in Target mRNA Degradation , 2005, Cell.

[14]  H. Ruohola-Baker,et al.  maelstrom is required for an early step in the establishment of Drosophila oocyte polarity: posterior localization of grk mRNA. , 1997, Development.

[15]  Shinji Yamaguchi,et al.  RNAi is activated during Drosophila oocyte maturation in a manner dependent on aubergine and spindle-E. , 2002, Genes & development.

[16]  Kaoru Saigo,et al.  Short-Interfering-RNA-Mediated Gene Silencing in Mammalian Cells Requires Dicer and eIF2C Translation Initiation Factors , 2003, Current Biology.

[17]  S. Counce Developmental morphology of polar granules in Drosophila . Including observations on pole cell behavior and distribution during embryogenesis , 1963 .

[18]  T. Jongens,et al.  germ cell-less Acts to Repress Transcription during the Establishment of the Drosophila Germ Cell Lineage , 2002, Current Biology.

[19]  H. Ruohola-Baker,et al.  Maelstrom, a Drosophila spindle-class gene, encodes a protein that colocalizes with Vasa and RDE1/AGO1 homolog, Aubergine, in nuage , 2003, Development.

[20]  G. Rubin,et al.  Transposition of cloned P elements into Drosophila germ line chromosomes. , 1982, Science.

[21]  R. Lehmann,et al.  Germ cell development in Drosophila. , 1996, Annual review of cell and developmental biology.

[22]  Y. Jan,et al.  The germ cell-less gene product: A posteriorly localized component necessary for germ cell development in Drosophila , 1992, Cell.

[23]  Satoru Kobayashi,et al.  Identification of a transcriptional regulatory region for germline-specific expression of vasa gene in Drosophila melanogaster , 2002, Mechanisms of Development.

[24]  Vladimir Gvozdev,et al.  A Distinct Small RNA Pathway Silences Selfish Genetic Elements in the Germline , 2006, Science.

[25]  Daniela C. Zarnescu,et al.  Biochemical and genetic interaction between the fragile X mental retardation protein and the microRNA pathway , 2004, Nature Neuroscience.

[26]  J. Birchler,et al.  RNAi related mechanisms affect both transcriptional and posttranscriptional transgene silencing in Drosophila. , 2002, Molecular cell.

[27]  Haifan Lin,et al.  Screens for piwi suppressors in Drosophila identify dosage-dependent regulators of germline stem cell division. , 2003, Genetics.

[28]  Y. Jan,et al.  Drosophila par-1 is required for oocyte differentiation and microtubule organization , 2001, Current Biology.

[29]  W. Filipowicz,et al.  Characterization of the interactions between mammalian PAZ PIWI domain proteins and Dicer , 2004, EMBO reports.

[30]  P. Macdonald,et al.  aubergine enhances oskar translation in the Drosophila ovary. , 1996, Development.

[31]  Andrew J Link,et al.  Tandem affinity purification and identification of protein complex components. , 2004, Methods.

[32]  H. Ruohola-Baker,et al.  Stem cell division is regulated by the microRNA pathway , 2005, Nature.

[33]  K. G. Coleman,et al.  Expression of engrailed proteins in arthropods, annelids, and chordates , 1989, Cell.

[34]  E. Wieschaus,et al.  Germline autonomy of maternal-effect mutations altering the embryonic body pattern of Drosophila. , 1986, Developmental biology.

[35]  A. Caudy,et al.  Fragile X-related protein and VIG associate with the RNA interference machinery. , 2002, Genes & development.

[36]  Ravi Sachidanandam,et al.  A germline-specific class of small RNAs binds mammalian Piwi proteins , 2006, Nature.

[37]  A. Caudy,et al.  Role for a bidentate ribonuclease in the initiation step of RNA interference , 2001 .

[38]  A. Mahowald Assembly of the Drosophila germ plasm. , 2001, International review of cytology.

[39]  M. Siomi,et al.  Slicer function of Drosophila Argonautes and its involvement in RISC formation. , 2005, Genes & development.

[40]  R. Hegner The Germ-cell Cycle in Animals , 2008, Nature.

[41]  C. Sander,et al.  A novel class of small RNAs bind to MILI protein in mouse testes , 2006, Nature.

[42]  Ji-Joon Song,et al.  The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes , 2003, Nature Structural Biology.

[43]  S. Kobayashi,et al.  Presence of mitochondrial large ribosomal RNA outside mitochondria in germ plasm of Drosophila melanogaster. , 1993, Science.

[44]  Y. Jan,et al.  Germ cell-less encodes a cell type-specific nuclear pore-associated protein and functions early in the germ-cell specification pathway of Drosophila. , 1994, Genes & development.

[45]  P. Macdonald,et al.  Live imaging of nuage and polar granules: evidence against a precursor-product relationship and a novel role for Oskar in stabilization of polar granule components , 2004, Journal of Cell Science.

[46]  P. Lasko,et al.  Germline development in vertebrates and invertebrates , 1999, Cellular and Molecular Life Sciences CMLS.

[47]  B. Alberts,et al.  Organization of the cytoskeleton in early Drosophila embryos , 1986, The Journal of cell biology.

[48]  R. Lehmann,et al.  The maternal gene nanos has a central role in posterior pattern formation of the Drosophila embryo. , 1991, Development.

[49]  P. Macdonald,et al.  Aubergine encodes a Drosophila polar granule component required for pole cell formation and related to eIF2C. , 2001, Development.

[50]  A. Michon,et al.  Requirement for Drosophila cytoplasmic tropomyosin in oskar mRNA localization , 1995, Nature.

[51]  S. Hammond,et al.  An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells , 2000, Nature.

[52]  G. Hannon,et al.  Crystal Structure of Argonaute and Its Implications for RISC Slicer Activity , 2004, Science.

[53]  G. Struhl,et al.  Cis- acting sequences responsible for anterior localization of bicoid mRNA in Drosophila embryos , 1988, Nature.

[54]  Julio E. Celis,et al.  Cell biology: a laboratory handbook. Volume 1. , 1994 .

[55]  V. Gvozdev,et al.  Argonaute protein PIWI controls mobilization of retrotransposons in the Drosophila male germline , 2005, Nucleic acids research.

[56]  R. Lehmann,et al.  Regulated synthesis, transport and assembly of the Drosophila germ plasm. , 1996, Trends in genetics : TIG.

[57]  Haifan Lin,et al.  A novel class of evolutionarily conserved genes defined by piwi are essential for stem cell self-renewal. , 1998, Genes & development.

[58]  Shinsei Minoshima,et al.  Identification of eight members of the Argonaute family in the human genome. , 2003, Genomics.

[59]  R. Boswell,et al.  Distribution of tudor protein in the Drosophila embryo suggests separation of functions based on site of localization. , 1993, Development.

[60]  Haifan Lin,et al.  piwi encodes a nucleoplasmic factor whose activity modulates the number and division rate of germline stem cells. , 2000, Development.

[61]  H. Jäckle,et al.  VASA mediates translation through interaction with a Drosophila yIF2 homolog. , 2000, Molecular cell.

[62]  Jing Wu,et al.  The Drosophila SDE3 Homolog armitage Is Required for oskar mRNA Silencing and Embryonic Axis Specification , 2004, Cell.

[63]  E. Sontheimer,et al.  Distinct Roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA Silencing Pathways , 2004, Cell.

[64]  N. Lau,et al.  Characterization of the piRNA Complex from Rat Testes , 2006, Science.

[65]  Y. Jan,et al.  Localization of vasa, a component of Drosophila polar granules, in maternal-effect mutants that alter embryonic anteroposterior polarity. , 1990, Development.

[66]  B. Sonnenblick Germ Cell Movements and Sex Differentiation of the Gonads in the Drosophila Embryo. , 1941, Proceedings of the National Academy of Sciences of the United States of America.

[67]  Toshiaki Watanabe,et al.  Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes. , 2006, Genes & development.

[68]  B. Alberts,et al.  Studies of nuclear and cytoplasmic behaviour during the five mitotic cycles that precede gastrulation in Drosophila embryogenesis. , 1983, Journal of cell science.

[69]  G. Struhl,et al.  RNA regulatory elements mediate control of Drosophila body pattern by the posterior morphogen nanos , 1991, Cell.

[70]  Michael Q. Zhang,et al.  The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis. , 2002, Genes & development.

[71]  Daniel St Johnston,et al.  staufen, a gene required to localize maternal RNAs in the Drosophila egg , 1991, Cell.

[72]  P. Macdonald bicoid mRNA localization signal: phylogenetic conservation of function and RNA secondary structure. , 1990, Development.

[73]  N. Perrimon,et al.  The autosomal FLP-DFS technique for generating germline mosaics in Drosophila melanogaster. , 1996, Genetics.

[74]  W. Theurkauf Premature microtubule-dependent cytoplasmic streaming in cappuccino and spire mutant oocytes. , 1994, Science.

[75]  W. Deng,et al.  miwi, a murine homolog of piwi, encodes a cytoplasmic protein essential for spermatogenesis. , 2002, Developmental cell.

[76]  A. F. Huettner The origin of the germ cells in Drosophila melanogaster , 1923 .

[77]  Haifan Lin,et al.  MIWI associates with translational machinery and PIWI-interacting RNAs (piRNAs) in regulating spermatogenesis , 2006, Proceedings of the National Academy of Sciences.

[78]  J. M. Thomson,et al.  Argonaute2 Is the Catalytic Engine of Mammalian RNAi , 2004, Science.

[79]  E. Sontheimer,et al.  A Dicer-2-Dependent 80S Complex Cleaves Targeted mRNAs during RNAi in Drosophila , 2004, Cell.

[80]  A. Denli,et al.  Normal microRNA Maturation and Germ-Line Stem Cell Maintenance Requires Loquacious, a Double-Stranded RNA-Binding Domain Protein , 2005, PLoS biology.

[81]  V. Gvozdev,et al.  The RNA Interference Proteins and Vasa Locus are Involved in the Silencing of Retrotransposons in the Female Germline of Drosophila melanogaster , 2004, RNA biology.

[82]  Guiliang Tang,et al.  siRNA and miRNA: an insight into RISCs. , 2005, Trends in biochemical sciences.

[83]  T. Iida,et al.  Delocalization of polar plasm components caused by grandchildless mutations, gs(1)N26 and gs(1)N441, in Drosophila melanogaster , 2000, Development, growth & differentiation.

[84]  G K Lewis,et al.  Isolation of monoclonal antibodies specific for human c-myc proto-oncogene product , 1985, Molecular and cellular biology.

[85]  T. Tuschl,et al.  Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs. , 2004, Molecular cell.

[86]  T. Schüpbach,et al.  cappuccino and spire: two unique maternal-effect loci required for both the anteroposterior and dorsoventral patterns of the Drosophila embryo. , 1989, Genes & development.

[87]  Haifan Lin,et al.  A novel class of small RNAs in mouse spermatogenic cells. , 2006, Genes & development.

[88]  A. Spradling,et al.  The Drosophila fusome, a germline-specific organelle, contains membrane skeletal proteins and functions in cyst formation. , 1994, Development.