Profiling and Integrated Analysis of Differentially Expressed Circular RNAs in Plasma Exosomes as Novel Biomarkers for Advanced-Stage Lung Adenocarcinoma

Purpose Exosomes contain abundant circRNAs and are determined to be involved in the pathogenesis of lung adenocarcinoma (LUAD). Thus, our study aimed to explore new circRNAs in plasma exosomes that could be involved in such pathogenesis. Patients and Methods High-throughput sequencing was used in identifying the alterations in exosomal circRNA expression. Gene ontology functional analysis (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis were performed to determine the significant functions and pathways associated with differentially expressed circRNAs. TargetScan and miRanda were used to predict circRNA-targeted microRNAs and mRNAs. CircRNA expression profiles were then validated by quantitative reverse-transcription polymerase chain reaction (qRT-PCR). Wound healing and Transwell assays were performed to determine the roles of has_circ_0102537 in LUAD progression. Results We identified six significantly upregulated and 214 significantly downregulated circRNAs. GO and KEGG pathway analysis suggested that the differentially expressed circRNAs are involved in the occurrence and development of LUAD. A circRNA–miRNA–mRNA meshwork was established to predict the potential interactions among these RNAs. The circRNA expression profile was then subjected to qRT-PCR for validation. We identified hsa_circ_0102537 to be downregulated in both LUAD plasma exosomes and tissues. GO, KEGG pathway analysis, circRNA–miRNA–mRNA meshwork, and further experiments suggest that hsa_circ_0102537 could be involved in LUAD progression. Conclusion Our study explored a large number of circRNAs that may be involved in the LUAD pathogenesis, thereby supporting the need for further research on both diagnosis biomarkers and the potential intervention therapeutic targets.

[1]  Zhiyun Wei,et al.  Depletion of exosomal circLDLR in follicle fluid derepresses miR-1294 function and inhibits estradiol production via CYP19A1 in polycystic ovary syndrome , 2020, Aging.

[2]  Peifeng Li,et al.  Emerging Function and Clinical Significance of Exosomal circRNAs in Cancer , 2020, Molecular therapy. Nucleic acids.

[3]  Yiguo Jiang,et al.  Circular RNA circSATB2 promotes progression of non-small cell lung cancer cells , 2020, Molecular Cancer.

[4]  Lei Li,et al.  A Novel Serum Exosomes-Based Biomarker hsa_circ_0002130 Facilitates Osimertinib-Resistance in Non-Small Cell Lung Cancer by Sponging miR-498 , 2020, OncoTargets and therapy.

[5]  Weigang Zhao,et al.  Upregulated lncRNA CASC9 Contributes to Progression of Non-Small Cell Lung Cancer Through Inhibition of miR-335-3p and Activation S100A14 Expression , 2020, OncoTargets and therapy.

[6]  Ling-Ling Chen The expanding regulatory mechanisms and cellular functions of circular RNAs , 2020, Nature Reviews Molecular Cell Biology.

[7]  Yi An,et al.  Circular RNA-Expression Profiling Reveals a Potential Role of Hsa_circ_0097435 in Heart Failure via Sponging Multiple MicroRNAs , 2020, Frontiers in Genetics.

[8]  Falin Chen,et al.  Circular RNAs expression profiles in plasma exosomes from early‐stage lung adenocarcinoma and the potential biomarkers , 2020, Journal of cellular biochemistry.

[9]  Qianqian Ning,et al.  Translation and functional roles of circular RNAs in human cancer , 2020, Molecular Cancer.

[10]  A. Tan Targeting the PI3K/Akt/mTOR pathway in non‐small cell lung cancer (NSCLC) , 2020, Thoracic cancer.

[11]  Dawei Sun,et al.  circRNA-002178 act as a ceRNA to promote PDL1/PD1 expression in lung adenocarcinoma , 2020, Cell Death & Disease.

[12]  Xuefei Shi,et al.  circRNAs and Exosomes: A Mysterious Frontier for Human Cancer , 2019, Molecular therapy. Nucleic acids.

[13]  A. Nicholson,et al.  Metabolomic, transcriptomic and genetic integrative analysis reveals important roles of adenosine diphosphate in haemostasis and platelet activation in non‐small‐cell lung cancer , 2019, Molecular oncology.

[14]  Gang Wu,et al.  MicroRNA-330-3p promotes brain metastasis and epithelial-mesenchymal transition via GRIA3 in non-small cell lung cancer , 2019, Aging.

[15]  G. Mehta,et al.  Fluid shear stress stimulates breast cancer cells to display invasive and chemoresistant phenotypes while upregulating PLAU in a 3D bioreactor , 2019, Biotechnology and bioengineering.

[16]  Y. Tan,et al.  Snail1-dependent cancer-associated fibroblasts induce epithelial-mesenchymal transition in lung cancer cells via exosomes. , 2019, QJM : monthly journal of the Association of Physicians.

[17]  Liang Ming,et al.  Exosomal circRNAs: biogenesis, effect and application in human diseases , 2019, Molecular Cancer.

[18]  A. Rossi,et al.  Emerging angiogenesis inhibitors for non-small cell lung cancer , 2019, Expert opinion on emerging drugs.

[19]  Jing Xu,et al.  Minimal information for studies of extracellular vesicles 2018 (MISEV2018): a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines , 2018, Journal of Extracellular Vesicles.

[20]  F. Martin,et al.  Carcinogens and DNA damage , 2018, Biochemical Society transactions.

[21]  Bowang Chen,et al.  Tumor-released lncRNA H19 promotes gefitinib resistance via packaging into exosomes in non-small cell lung cancer , 2018, Oncology reports.

[22]  A. Jemal,et al.  Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries , 2018, CA: a cancer journal for clinicians.

[23]  Jian-ning Zhang,et al.  Circular Ribonucleic Acid Expression Alteration in Exosomes from the Brain Extracellular Space after Traumatic Brain Injury in Mice. , 2018, Journal of neurotrauma.

[24]  Xuan Liu,et al.  Aldolase A promotes proliferation and G1/S transition via the EGFR/MAPK pathway in non-small cell lung cancer , 2018, Cancer communications.

[25]  H. Zhang,et al.  Long intergenic non-protein coding RNA 319 aggravates lung adenocarcinoma carcinogenesis by modulating miR-450b-5p/EZH2. , 2018, Gene.

[26]  Lin Guo,et al.  Microarray profile of circular RNAs identifies hsa_circ_0014130 as a new circular RNA biomarker in non-small cell lung cancer , 2018, Scientific Reports.

[27]  Ming Xu,et al.  CircRNA Expression Profile in Early-Stage Lung Adenocarcinoma Patients , 2017, Cellular Physiology and Biochemistry.

[28]  George Thomas,et al.  Ribosome biogenesis in cancer: new players and therapeutic avenues , 2017, Nature Reviews Cancer.

[29]  Alexander E. Kel,et al.  cutPrimers: A New Tool for Accurate Cutting of Primers from Reads of Targeted Next Generation Sequencing , 2017, J. Comput. Biol..

[30]  Qingqing Zhu,et al.  The biology, function and clinical implications of exosomes in lung cancer. , 2017, Cancer letters.

[31]  Yang Wang,et al.  Coding and noncoding landscape of extracellular RNA released by human glioma stem cells , 2017, Nature Communications.

[32]  Bing Chen,et al.  exoRBase: a database of circRNA, lncRNA and mRNA in human blood exosomes , 2017, Nucleic Acids Res..

[33]  Jennifer B Dennison,et al.  MCAM Mediates Chemoresistance in Small-Cell Lung Cancer via the PI3K/AKT/SOX2 Signaling Pathway. , 2017, Cancer research.

[34]  Shuzhen Wei,et al.  hsa_circ_0013958: a circular RNA and potential novel biomarker for lung adenocarcinoma , 2017, The FEBS journal.

[35]  Jingwei Shao,et al.  Metapristone suppresses non-small cell lung cancer proliferation and metastasis via modulating RAS/RAF/MEK/MAPK signaling pathway. , 2017, Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie.

[36]  Fen Pei,et al.  Role of Autophagy and Apoptosis in Non-Small-Cell Lung Cancer , 2017, International journal of molecular sciences.

[37]  Suxin Yang,et al.  Overexpression of AmRosea1 Gene Confers Drought and Salt Tolerance in Rice , 2016, International journal of molecular sciences.

[38]  Jie He,et al.  Epidemiology of Lung Cancer. , 2016, Surgical oncology clinics of North America.

[39]  C. Zappa,et al.  Non-small cell lung cancer: current treatment and future advances. , 2016, Translational lung cancer research.

[40]  Jun Cheng,et al.  Specific identification and quantification of circular RNAs from sequencing data , 2016, Bioinform..

[41]  Meng Xu,et al.  The regulation of cancer cell migration by lung cancer cell-derived exosomes through TGF-β and IL-10. , 2016, Oncology letters.

[42]  V. Raman,et al.  DDX3, a potential target for cancer treatment , 2015, Molecular Cancer.

[43]  Botao Zhao,et al.  MiR-181a-5p inhibits cell proliferation and migration by targeting Kras in non-small cell lung cancer A549 cells. , 2015, Acta biochimica et biophysica Sinica.

[44]  Jiang-xia Zhao,et al.  Circular RNA is enriched and stable in exosomes: a promising biomarker for cancer diagnosis , 2015, Cell Research.

[45]  Kate M Broadbent,et al.  Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA , 2015, BMC Genomics.

[46]  G. Shan,et al.  Exon-intron circular RNAs regulate transcription in the nucleus , 2015, Nature Structural &Molecular Biology.

[47]  Ming Liu,et al.  miR-544a promotes the invasion of lung cancer cells by targeting cadherina 1 in vitro , 2014, OncoTargets and therapy.

[48]  Julia Salzman,et al.  Cell-Type Specific Features of Circular RNA Expression , 2013, PLoS genetics.

[49]  Sebastian D. Mackowiak,et al.  Circular RNAs are a large class of animal RNAs with regulatory potency , 2013, Nature.

[50]  J. Kjems,et al.  Natural RNA circles function as efficient microRNA sponges , 2013, Nature.

[51]  Davis J. McCarthy,et al.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..

[52]  E. Engels Inflammation in the development of lung cancer: epidemiological evidence , 2008, Expert review of anticancer therapy.

[53]  J. Bartek,et al.  Centrosome abnormalities are frequently observed in non‐small‐cell lung cancer and are associated with aneuploidy and cyclin E overexpression , 2006, The Journal of pathology.

[54]  T. Whiteside Tumor-Derived Exosomes and Their Role in Cancer Progression. , 2016, Advances in clinical chemistry.

[55]  Thomas R. Gingeras,et al.  STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..