Transcriptome profiling of coriander: a dual purpose crop unravels stem gall resistance genes
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[1] A. Verma,et al. Microsatellite in Coriander: A Cross Species Amplification within Apiaceae Family , 2017 .
[2] H. Vandenhove,et al. Lemna minor plants chronically exposed to ionising radiation: RNA-seq analysis indicates a dose rate dependent shift from acclimation to survival strategies. , 2017, Plant science : an international journal of experimental plant biology.
[3] R. Prasanna,et al. Rhizobia: a potential biocontrol agent for soilborne fungal pathogens , 2017, Folia Microbiologica.
[4] T. Brutnell,et al. Transcriptome response of cassava leaves under natural shade , 2016, Scientific Reports.
[5] Yajun Li,et al. Physiological Investigation and Transcriptome Analysis of Polyethylene Glycol (PEG)-Induced Dehydration Stress in Cassava , 2016, International journal of molecular sciences.
[6] H. Vandenhove,et al. Characterizing dose response relationships: Chronic gamma radiation in Lemna minor induces oxidative stress and altered polyploidy level. , 2015, Journal of environmental radioactivity.
[7] H. Vandenhove,et al. The first draft genome of the aquatic model plant Lemna minor opens the route for future stress physiology research and biotechnological applications , 2015, Biotechnology for Biofuels.
[8] S. Zhong,et al. Identification of Photosynthesis-Associated C4 Candidate Genes through Comparative Leaf Gradient Transcriptome in Multiple Lineages of C3 and C4 Species , 2015, PloS one.
[9] H. Vandenhove,et al. β-Radiation Stress Responses on Growth and Antioxidative Defense System in Plants: A Study with Strontium-90 in Lemna minor , 2015, International journal of molecular sciences.
[10] Natalie Leys,et al. Molecular investigation of the radiation resistance of edible cyanobacterium Arthrospira sp. PCC 8005 , 2015, MicrobiologyOpen.
[11] G. Agrawal,et al. Unraveling low-level gamma radiation--responsive changes in expression of early and late genes in leaves of rice seedlings at Iitate Village, Fukushima. , 2014, The Journal of heredity.
[12] Lukman S. Sarker,et al. Transcriptome profiling, and cloning and characterization of the main monoterpene synthases of Coriandrum sativum L. , 2014, Phytochemistry.
[13] J. Fangel,et al. The role of the cell wall in plant immunity , 2014, Front. Plant Sci..
[14] Björn Usadel,et al. Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..
[15] Dong Sub Kim,et al. Transcriptome profiling in response to different types of ionizing radiation and identification of multiple radio marker genes in rice. , 2014, Physiologia plantarum.
[16] Farooq Anwar,et al. Coriander (Coriandrum sativum L.): A Potential Source of High‐Value Components for Functional Foods and Nutraceuticals‐ A Review , 2013, Phytotherapy research : PTR.
[17] A. Nepomuceno,et al. Genome-wide analysis of the Hsp20 gene family in soybean: comprehensive sequence, genomic organization and expression profile analysis under abiotic and biotic stresses , 2013, BMC Genomics.
[18] Colin N. Dewey,et al. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis , 2013, Nature Protocols.
[19] R. Sowdhamini,et al. Comparative analyses of stress-responsive genes in Arabidopsis thaliana: insight from genomic data mining, functional enrichment, pathway analysis and phenomics. , 2013, Molecular bioSystems.
[20] Khader Shameer,et al. STIFDB2: An Updated Version of Plant Stress-Responsive TranscrIption Factor DataBase with Additional Stress Signals, Stress-Responsive Transcription Factor Binding Sites and Stress-Responsive Genes in Arabidopsis and Rice , 2013, Plant & cell physiology.
[21] Dong Sub Kim,et al. Genome-wide transcriptome profiling of ROS scavenging and signal transduction pathways in rice (Oryza sativa L.) in response to different types of ionizing radiation , 2012, Molecular Biology Reports.
[22] S. Duplessis,et al. Mitogen-Activated Protein Kinase Signaling in Plant-Interacting Fungi: Distinct Messages from Conserved Messengers[W] , 2012, Plant Cell.
[23] David R. Kelley,et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks , 2012, Nature Protocols.
[24] Martin Vingron,et al. Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels , 2012, Bioinform..
[25] L. Mueller,et al. Designing a transcriptome next-generation sequencing project for a nonmodel plant species. , 2012, American journal of botany.
[26] Xuan Li,et al. Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study , 2011, BMC Bioinformatics.
[27] J. Parker,et al. Arabidopsis EDS1 Connects Pathogen Effector Recognition to Cell Compartment–Specific Immune Responses , 2011, Science.
[28] Pavla Binarová,et al. A nodulin/glutamine synthetase-like fusion protein is implicated in the regulation of root morphogenesis and in signalling triggered by flagellin , 2011, Planta.
[29] K. Apel,et al. The Cytoskeleton and the Peroxisomal-Targeted SNOWY COTYLEDON3 Protein Are Required for Chloroplast Development in Arabidopsis[W] , 2010, Plant Cell.
[30] Daniel R Zerbino,et al. Using the Velvet de novo Assembler for Short‐Read Sequencing Technologies , 2010, Current protocols in bioinformatics.
[31] W. Huber,et al. which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets , 2011 .
[32] Yuling Bai,et al. Identification of tomato phosphatidylinositol-specific phospholipase-C (PI-PLC) family members and the role of PLC4 and PLC6 in HR and disease resistance. , 2010, The Plant journal : for cell and molecular biology.
[33] S. Horvath,et al. WGCNA: an R package for weighted correlation network analysis , 2008, BMC Bioinformatics.
[34] W. Xiao,et al. Arabidopsis thaliana Y-family DNA polymerase eta catalyses translesion synthesis and interacts functionally with PCNA2. , 2008, The Plant journal : for cell and molecular biology.
[35] I. Hickson,et al. RecQ helicases: guardian angels of the DNA replication fork , 2008, Chromosoma.
[36] J. Kieber,et al. Cytokinin Regulates Type-A Arabidopsis Response Regulator Activity and Protein Stability via Two-Component Phosphorelay[W] , 2007, The Plant Cell Online.
[37] R. Hückelhoven. Cell wall-associated mechanisms of disease resistance and susceptibility. , 2007, Annual review of phytopathology.
[38] Akiyasu C. Yoshizawa,et al. KAAS: an automatic genome annotation and pathway reconstruction server , 2007, Environmental health perspectives.
[39] Stefan Götz,et al. Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics , 2007, International journal of plant genomics.
[40] D. Stumpo,et al. RECQL, a Member of the RecQ Family of DNA Helicases, Suppresses Chromosomal Instability , 2006, Molecular and Cellular Biology.
[41] Brody J Deyoung,et al. Plant NBS-LRR proteins in pathogen sensing and host defense , 2006, Nature Immunology.
[42] Peter Doerner,et al. ATR and ATM play both distinct and additive roles in response to ionizing radiation. , 2006, The Plant journal : for cell and molecular biology.
[43] T. Mengiste,et al. Arabidopsis WRKY33 transcription factor is required for resistance to necrotrophic fungal pathogens. , 2006, The Plant journal : for cell and molecular biology.
[44] Lin Fang,et al. WEGO: a web tool for plotting GO annotations , 2006, Nucleic Acids Res..
[45] Thomas Lengauer,et al. Improved scoring of functional groups from gene expression data by decorrelating GO graph structure , 2006, Bioinform..
[46] J. Dangl,et al. Two modes of pathogen recognition by plants. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[47] L. Hoffmann,et al. Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. , 2005, Journal of experimental botany.
[48] H. Paretzke,et al. Low-level radiocaesium exposure alters gene expression in roots of Arabidopsis. , 2005, The New phytologist.
[49] W. Scheible,et al. Repressor- and Activator-Type Ethylene Response Factors Functioning in Jasmonate Signaling and Disease Resistance Identified via a Genome-Wide Screen of Arabidopsis Transcription Factor Gene Expression[w] , 2005, Plant Physiology.
[50] Juan Miguel García-Gómez,et al. BIOINFORMATICS APPLICATIONS NOTE Sequence analysis Manipulation of FASTQ data with Galaxy , 2005 .
[51] Zeng-Yu Wang,et al. Overexpression of COL9, a CONSTANS-LIKE gene, delays flowering by reducing expression of CO and FT in Arabidopsis thaliana. , 2005, The Plant journal : for cell and molecular biology.
[52] N. Gutterson,et al. Regulation of disease resistance pathways by AP2/ERF transcription factors. , 2004, Current opinion in plant biology.
[53] S. Rhee,et al. MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. , 2004, The Plant journal : for cell and molecular biology.
[54] G. Rutter,et al. Roles of 5'-AMP-activated protein kinase (AMPK) in mammalian glucose homoeostasis. , 2003, The Biochemical journal.
[55] K. Shirasu,et al. HSP90 interacts with RAR1 and SGT1 and is essential for RPS2-mediated disease resistance in Arabidopsis , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[56] Rodolfo Zentella,et al. AtHVA22 gene family in Arabidopsis: phylogenetic relationship, ABA and stress regulation, and tissue-specific expression , 2002, Plant Molecular Biology.
[57] M. Gouy,et al. Lipid Phosphate Phosphatases in Arabidopsis , 2001, The Journal of Biological Chemistry.
[58] Kwang-Yeol Yang,et al. Activation of a mitogen-activated protein kinase pathway is involved in disease resistance in tobacco. , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[59] Deloire Aj. Antifungal peptides: potential candidates for the treatment of fungal infections. , 2000 .
[60] A. D. De Lucca,et al. Antifungal peptides: potential candidates for the treatment of fungal infections , 2000, Expert opinion on investigational drugs.
[61] B. Thomma,et al. Requirement of functional ethylene-insensitive 2 gene for efficient resistance of Arabidopsis to infection by Botrytis cinerea. , 1999, Plant physiology.
[62] D. Klessig,et al. Signal perception and transduction in plant defense responses. , 1997, Genes & development.
[63] C. Chapple,et al. Cinnamate-4-Hydroxylase Expression in Arabidopsis (Regulation in Response to Development and the Environment) , 1997, Plant physiology.
[64] K. Marrs. THE FUNCTIONS AND REGULATION OF GLUTATHIONE S-TRANSFERASES IN PLANTS. , 1996, Annual review of plant physiology and plant molecular biology.
[65] R. Dixon,et al. Stress-Induced Phenylpropanoid Metabolism. , 1995, The Plant cell.
[66] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[67] S. N. Saxena,et al. Comparative superiority of coriander variety NRCSS ACr-1 for yield and stem gall disease tolerance , 2016 .
[68] Oommen K. Mathew,et al. STIFDB 2 : An Updated Version of Plant Stress-Responsive TranscrIption Factor DataBase with Additional Stress Signals , Stress-Responsive Transcription Factor Binding Sites and Stress-Responsive Genes in Arabidopsis and Rice , 2013 .
[69] M. Gerstein,et al. RNA-Seq: a revolutionary tool for transcriptomics , 2009, Nature Reviews Genetics.
[70] Cheng Li,et al. Adjusting batch effects in microarray expression data using empirical Bayes methods. , 2007, Biostatistics.
[71] S. Roux,et al. Expression profiling of the Arabidopsis annexin gene family during germination, de-etiolation and abiotic stress. , 2006, Plant physiology and biochemistry : PPB.
[72] X. Deng,et al. Direct interaction of Arabidopsis cryptochromes with COP1 in light control development. , 2001, Science.
[73] Susumu Goto,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 2000, Nucleic Acids Res..
[74] Lior Pachter,et al. Sequence Analysis , 2020, Definitions.