DNA methylation dynamics during the mammalian life cycle
暂无分享,去创建一个
[1] M. Kaufman,et al. Establishment in culture of pluripotential cells from mouse embryos , 1981, Nature.
[2] Rudolf Jaenisch,et al. Targeted mutation of the DNA methyltransferase gene results in embryonic lethality , 1992, Cell.
[3] L. E. McDonald,et al. A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[4] S. Clark,et al. Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA. , 1997, Nucleic acids research.
[5] C. Walsh,et al. Cytosine methylation and the ecology of intragenomic parasites. , 1997, Trends in genetics : TIG.
[6] C. Walsh,et al. Transcription of IAP endogenous retroviruses is constrained by cytosine methylation , 1998, Nature Genetics.
[7] D. Haber,et al. DNA Methyltransferases Dnmt3a and Dnmt3b Are Essential for De Novo Methylation and Mammalian Development , 1999, Cell.
[8] David I. K. Martin,et al. Epigenetic inheritance at the agouti locus in the mouse , 1999, Nature Genetics.
[9] J. Walter,et al. Embryogenesis: Demethylation of the zygotic paternal genome , 2000, Nature.
[10] W. Reik,et al. Active demethylation of the paternal genome in the mouse zygote , 2000, Current Biology.
[11] A. Bird,et al. Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[12] W. Reik,et al. Genomic imprinting: parental influence on the genome , 2001, Nature Reviews Genetics.
[13] M. Surani,et al. Epigenetic reprogramming in mouse primordial germ cells , 2002, Mechanisms of Development.
[14] A. Bird. DNA methylation patterns and epigenetic memory. , 2002, Genes & development.
[15] W. Reik,et al. Resistance of IAPs to methylation reprogramming may provide a mechanism for epigenetic inheritance in the mouse , 2003, Genesis.
[16] T. Bestor,et al. Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L , 2004, Nature.
[17] Lloyd J. Old,et al. Cancer/testis antigens, gametogenesis and cancer , 2005, Nature Reviews Cancer.
[18] Y. Matsui,et al. Extensive and orderly reprogramming of genome-wide chromatin modifications associated with specification and early development of germ cells in mice. , 2005, Developmental biology.
[19] A. Gnirke,et al. Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis , 2005, Nucleic acids research.
[20] E. Li,et al. DNA methylation is a primary mechanism for silencing postmigratory primordial germ cell genes in both germ cell and somatic cell lineages , 2006, Development.
[21] Wei Jiang,et al. High-throughput DNA methylation profiling using universal bead arrays. , 2006, Genome research.
[22] T. Rauch,et al. MIRA-assisted microarray analysis, a new technology for the determination of DNA methylation patterns, identifies frequent methylation of homeodomain-containing genes in lung cancer cells. , 2006, Cancer research.
[23] Kenny Q. Ye,et al. Comparative isoschizomer profiling of cytosine methylation: the HELP assay. , 2006, Genome research.
[24] Tomohiro Hayakawa,et al. Maintenance of self‐renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b , 2006, Genes to cells : devoted to molecular & cellular mechanisms.
[25] H. Cedar,et al. G9a-mediated irreversible epigenetic inactivation of Oct-3/4 during early embryogenesis , 2006, Nature Cell Biology.
[26] Michael B. Stadler,et al. Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome , 2007, Nature Genetics.
[27] Satoshi Tanaka,et al. PGC7/Stella protects against DNA demethylation in early embryogenesis , 2007, Nature Cell Biology.
[28] W. Reik. Stability and flexibility of epigenetic gene regulation in mammalian development , 2007, Nature.
[29] M. Surani,et al. Genetic and Epigenetic Regulators of Pluripotency , 2007, Cell.
[30] A. Chess,et al. Gene Body-Specific Methylation on the Active X Chromosome , 2007, Science.
[31] C. Allis,et al. DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA , 2007, Nature.
[32] R. Lister,et al. Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis , 2008, Cell.
[33] R. Jaenisch,et al. Maternal and zygotic Dnmt1 are necessary and sufficient for the maintenance of DNA methylation imprints during preimplantation development. , 2008, Genes & development.
[34] T. Mikkelsen,et al. Genome-scale DNA methylation maps of pluripotent and differentiated cells , 2008, Nature.
[35] N. Gray,et al. Deletion of the Pluripotency-Associated Tex19.1 Gene Causes Activation of Endogenous Retroviruses and Defective Spermatogenesis in Mice , 2008, PLoS genetics.
[36] Ravi Sachidanandam,et al. A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice. , 2008, Molecular cell.
[37] Jim Stalker,et al. A Novel CpG Island Set Identifies Tissue-Specific Methylation at Developmental Gene Loci , 2008, PLoS biology.
[38] Vladimir Benes,et al. Transient cyclical methylation of promoter DNA , 2008, Nature.
[39] A. Bird,et al. DNA methylation landscapes: provocative insights from epigenomics , 2008, Nature Reviews Genetics.
[40] W. Reik,et al. Epigenetic restriction of embryonic cell lineage fate by methylation of Elf5 , 2008, Nature Cell Biology.
[41] R. Durbin,et al. A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis , 2008, Nature Biotechnology.
[42] Michael B. Stadler,et al. Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors. , 2008, Molecular cell.
[43] H. Cedar,et al. Linking DNA methylation and histone modification: patterns and paradigms , 2009, Nature Reviews Genetics.
[44] J. Greally,et al. The HELP assay. , 2009, Methods in molecular biology.
[45] David R. Liu,et al. Conversion of 5-Methylcytosine to 5- Hydroxymethylcytosine in Mammalian DNA by the MLL Partner TET1 , 2009 .
[46] G. Kelsey,et al. Transcription is required for establishment of germline methylation marks at imprinted genes. , 2009, Genes & development.
[47] E. Li,et al. KDM1B is a histone H3K4 demethylase required to establish maternal genomic imprints , 2009, Nature.
[48] M. Bartolomei. Genomic imprinting: employing and avoiding epigenetic processes. , 2009, Genes & development.
[49] A. Feinberg,et al. Genome-wide methylation analysis of human colon cancer reveals similar hypo- and hypermethylation at conserved tissue-specific CpG island shores , 2008, Nature Genetics.
[50] Michael Q. Zhang,et al. Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications , 2010, Nature Biotechnology.
[51] M. Surani,et al. Genome-Wide Reprogramming in the Mouse Germ Line Entails the Base Excision Repair Pathway , 2010, Science.
[52] D. Rossell,et al. Ectopic Expression of Germline Genes Drives Malignant Brain Tumor Growth in Drosophila , 2010, Science.
[53] A. Feinberg,et al. Comprehensive High‐Throughput Arrays for Relative Methylation (CHARM) , 2010, Current protocols in human genetics.
[54] Michael Weber,et al. Targets and dynamics of promoter DNA methylation during early mouse development , 2010, Nature Genetics.
[55] P. Laird. Principles and challenges of genome-wide DNA methylation analysis , 2010, Nature Reviews Genetics.
[56] Damien Neuillet,et al. Dnmt3b recruitment through E2F6 transcriptional repressor mediates germ-line gene silencing in murine somatic tissues , 2010, Proceedings of the National Academy of Sciences.
[57] Robert S. Illingworth,et al. CpG islands influence chromatin structure via the CpG-binding protein Cfp1 , 2010, Nature.
[58] David Serre,et al. MBD-isolated Genome Sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome , 2009, Nucleic acids research.
[59] Irving L. Weissman,et al. A comprehensive methylome map of lineage commitment from hematopoietic progenitors , 2010, Nature.
[60] David R. Liu,et al. The Behaviour of 5-Hydroxymethylcytosine in Bisulfite Sequencing , 2010, PloS one.
[61] R. Meehan,et al. Enzymatic approaches and bisulfite sequencing cannot distinguish between 5-methylcytosine and 5-hydroxymethylcytosine in DNA. , 2010, BioTechniques.
[62] M. Pellegrini,et al. Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency , 2010, Nature.
[63] H. Schöler,et al. Dynamic link of DNA demethylation, DNA strand breaks and repair in mouse zygotes , 2010, The EMBO journal.
[64] Albert Jeltsch,et al. Cyclical DNA methylation of a transcriptionally active promoter , 2008, Nature.
[65] R. Chatterjee,et al. CpG methylation of half-CRE sequences creates C/EBPα binding sites that activate some tissue-specific genes , 2010, Proceedings of the National Academy of Sciences.
[66] A. Ferguson-Smith. Genomic imprinting: the emergence of an epigenetic paradigm , 2011, Nature Reviews Genetics.
[67] K. Mitsuya,et al. Role for piRNAs and Noncoding RNA in de Novo DNA Methylation of the Imprinted Mouse Rasgrf1 Locus , 2011, Science.
[68] Thomas Lengauer,et al. Genomic Distribution and Inter-Sample Variation of Non-CpG Methylation across Human Cell Types , 2011, PLoS genetics.
[69] Poshen B. Chen,et al. Mbd3/NURD Complex Regulates Expression of 5-Hydroxymethylcytosine Marked Genes in Embryonic Stem Cells , 2011, Cell.
[70] Vijay K. Tiwari,et al. DNA-binding factors shape the mouse methylome at distal regulatory regions , 2011, Nature.
[71] A. Klein-Szanto,et al. Thymine DNA Glycosylase Is Essential for Active DNA Demethylation by Linked Deamination-Base Excision Repair , 2011, Cell.
[72] K. Helin,et al. DNA methylation: TET proteins—guardians of CpG islands? , 2012, EMBO reports.
[73] Chuan He,et al. Tet Proteins Can Convert 5-Methylcytosine to 5-Formylcytosine and 5-Carboxylcytosine , 2011, Science.
[74] D. Page,et al. Tet 1 Is Dispensable for Maintaining Pluripotency and Its Loss Is Compatible with Embryonic and Postnatal Development , 2011 .
[75] G. Pfeifer,et al. Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine , 2011, Proceedings of the National Academy of Sciences.
[76] Yi Zhang,et al. Replication-Dependent Loss of 5-Hydroxymethylcytosine in Mouse Preimplantation Embryos , 2011, Science.
[77] Juri Rappsilber,et al. TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity , 2011, Nature.
[78] D. Page,et al. Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development. , 2011, Cell stem cell.
[79] F. Lienert,et al. Identification of genetic elements that autonomously determine DNA methylation states , 2011, Nature Genetics.
[80] S. Andrews,et al. Dynamic CpG island methylation landscape in oocytes and preimplantation embryos , 2011, Nature Genetics.
[81] Yang Wang,et al. Tet-Mediated Formation of 5-Carboxylcytosine and Its Excision by TDG in Mammalian DNA , 2011, Science.
[82] S. Andrews,et al. Dynamic stage-specific changes in imprinted differentially methylated regions during early mammalian development and prevalence of non-CpG methylation in oocytes , 2011, Development.
[83] Qing Dai,et al. Generation and replication-dependent dilution of 5fC and 5caC during mouse preimplantation development , 2011, Cell Research.
[84] Philipp Kapranov,et al. Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells , 2011, Nature.
[85] Z. Deng,et al. The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes , 2011, Nature.
[86] W. Reik,et al. Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation , 2011, Nature.
[87] Robert S. Illingworth,et al. Cell type-specific DNA methylation at intragenic CpG islands in the immune system. , 2011, Genome research.
[88] Christoph Bock,et al. Global DNA Demethylation During Mouse Erythropoiesis in Vivo , 2011, Science.
[89] W. Reik,et al. 5-Hydroxymethylcytosine in the mammalian zygote is linked with epigenetic reprogramming. , 2011, Nature communications.
[90] J. Berg,et al. Dnmt3a is essential for hematopoietic stem cell differentiation , 2011, Nature Genetics.
[91] Colm E. Nestor,et al. Promoter DNA methylation couples genome-defence mechanisms to epigenetic reprogramming in the mouse germline , 2012, Development.
[92] M. Bartolomei,et al. Genomic imprinting: recognition and marking of imprinted loci. , 2012, Current opinion in genetics & development.
[93] G. Kelsey,et al. De novo DNA methylation: a germ cell perspective. , 2012, Trends in genetics : TIG.
[94] W. Reik,et al. Uncovering the role of 5-hydroxymethylcytosine in the epigenome , 2011, Nature Reviews Genetics.
[95] Zachary D. Smith,et al. A unique regulatory phase of DNA methylation in the early mammalian embryo , 2012, Nature.
[96] M. Surani,et al. Parallel mechanisms of epigenetic reprogramming in the germline. , 2012, Trends in genetics : TIG.
[97] S. Balasubramanian,et al. Quantitative Sequencing of 5-Methylcytosine and 5-Hydroxymethylcytosine at Single-Base Resolution , 2012, Science.
[98] D. O'Gorman,et al. Acute exercise remodels promoter methylation in human skeletal muscle. , 2012, Cell metabolism.
[99] Stephan Beck,et al. Methylome analysis using MeDIP-seq with low DNA concentrations , 2012, Nature Protocols.
[100] Colm E. Nestor,et al. Tissue type is a major modifier of the 5-hydroxymethylcytosine content of human genes. , 2012, Genome research.
[101] J. Berg,et al. Dnmt 3 a is essential for hematopoietic stem cell differentiation , 2013 .