Distinguishing one from many using super-resolution compressive sensing

Distinguishing whether a signal corresponds to a single source or a limited number of highly overlapping point spread functions (PSFs) is a ubiquitous problem across all imaging scales, whether detecting receptor-ligand interactions in cells or detecting binary stars. Super-resolution imaging based upon compressed sensing exploits the relative sparseness of the point sources to successfully resolve sources which may be separated by much less than the Rayleigh criterion. However, as a solution to an underdetermined system of linear equations, compressive sensing requires the imposition of constraints which may not always be valid. One typical constraint is that the PSF is known. However, the PSF of the actual optical system may reflect aberrations not present in the theoretical ideal optical system. Even when the optics are well characterized, the actual PSF may reflect factors such as non-uniform emission of the point source (e.g. fluorophore dipole emission). As such, the actual PSF may differ from the PSF used as a constraint. Similarly, multiple different regularization constraints have been suggested including the l1-norm, l0-norm, and generalized Gaussian Markov random fields (GGMRFs), each of which imposes a different constraint. Other important factors include the signal-to-noise ratio of the point sources and whether the point sources vary in intensity. In this work, we explore how these factors influence super-resolution image recovery robustness, determining the sensitivity and specificity. As a result, we determine an approach that is more robust to the types of PSF errors present in actual optical systems.

[1]  P. Eilers,et al.  Deconvolution of pulse trains with the L0 penalty. , 2011, Analytica chimica acta.

[2]  P. Eilers,et al.  Sparse deconvolution of high-density super-resolution images , 2016, Scientific Reports.

[3]  Chun Jason Xue,et al.  Faster super-resolution imaging of high density molecules via a cascading algorithm based on compressed sensing. , 2015, Optics express.

[4]  Michael D. Mason,et al.  Ultra-high resolution imaging by fluorescence photoactivation localization microscopy. , 2006, Biophysical journal.

[5]  Cyril Ruckebusch,et al.  Sparse deconvolution in one and two dimensions: applications in endocrinology and single-molecule fluorescence imaging. , 2014, Analytical chemistry.

[6]  J. Dorband,et al.  Hubble Space Telescope Faint Object Camera calculated point-spread functions. , 1997, Applied optics.

[7]  R. Tibshirani Regression Shrinkage and Selection via the Lasso , 1996 .

[8]  Michael J Rust,et al.  Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM) , 2006, Nature Methods.

[9]  E. H. Linfoot Principles of Optics , 1961 .

[10]  Stephen P. Boyd,et al.  Graph Implementations for Nonsmooth Convex Programs , 2008, Recent Advances in Learning and Control.

[11]  Suliana Manley,et al.  Quantitative evaluation of software packages for single-molecule localization microscopy , 2015, Nature Methods.

[12]  A. Volgenant,et al.  A shortest augmenting path algorithm for dense and sparse linear assignment problems , 1987, Computing.

[13]  Jerry Chao,et al.  Quantitative study of single molecule location estimation techniques. , 2009, Optics express.

[14]  Andrea M. Ghez,et al.  High Spatial Resolution Imaging of Pre-Main-Sequence Binary Stars: Resolving the Relationship between Disks and Close Companions , 1997 .

[15]  S. Gibson,et al.  Experimental test of an analytical model of aberration in an oil-immersion objective lens used in three-dimensional light microscopy. , 1992, Journal of the Optical Society of America. A, Optics and image science.

[16]  J. Zerubia,et al.  Gaussian approximations of fluorescence microscope point-spread function models. , 2007, Applied optics.

[17]  Ken D. Sauer,et al.  A generalized Gaussian image model for edge-preserving MAP estimation , 1993, IEEE Trans. Image Process..

[18]  R. B. Deshmukh,et al.  A Systematic Review of Compressive Sensing: Concepts, Implementations and Applications , 2018, IEEE Access.

[19]  J. Lippincott-Schwartz,et al.  Imaging Intracellular Fluorescent Proteins at Nanometer Resolution , 2006, Science.

[20]  E. Bertin,et al.  SExtractor: Software for source extraction , 1996 .

[21]  X. Zhuang,et al.  Breaking the Diffraction Barrier: Super-Resolution Imaging of Cells , 2010, Cell.

[22]  Lei Zhu,et al.  Faster STORM using compressed sensing , 2012, Nature Methods.

[23]  Xiaowei Zhuang,et al.  Fast compressed sensing analysis for super-resolution imaging using L1-homotopy. , 2013, Optics express.

[24]  E. Candès,et al.  Stable signal recovery from incomplete and inaccurate measurements , 2005, math/0503066.