Influence of physiological noise on accelerated 2D and 3D resting state functional MRI data at 7 T

Physiological noise often dominates the blood‐oxygen level–dependent (BOLD) signal fluctuations in high‐field functional MRI (fMRI) data. Therefore, to optimize fMRI protocols, it becomes crucial to investigate how physiological signal fluctuations impact various acquisition and reconstruction schemes at different acquisition speeds. In particular, further differences can arise between 2D and 3D fMRI acquisitions due to different encoding strategies, thereby impacting fMRI sensitivity in potentially significant ways.

[1]  M. Fukunaga,et al.  Sources of functional magnetic resonance imaging signal fluctuations in the human brain at rest: a 7 T study. , 2009, Magnetic resonance imaging.

[2]  P. Figueiredo,et al.  Signal fluctuations in fMRI data acquired with 2D-EPI and 3D-EPI at 7 Tesla. , 2013, Magnetic resonance imaging.

[3]  Steen Moeller,et al.  6765 RO extended FOV SENSE / GRAPPA for multiband imaging with FOV shift , 2013 .

[4]  Mayur Narsude,et al.  Three‐dimensional echo planar imaging with controlled aliasing: A sequence for high temporal resolution functional MRI , 2016, Magnetic resonance in medicine.

[5]  Jeff H. Duyn,et al.  Low-frequency fluctuations in the cardiac rate as a source of variance in the resting-state fMRI BOLD signal , 2007, NeuroImage.

[6]  Tobias Wech,et al.  High resolution myocardial first‐pass perfusion imaging with extended anatomic coverage , 2014, Journal of magnetic resonance imaging : JMRI.

[7]  Mark W. Woolrich,et al.  Advances in functional and structural MR image analysis and implementation as FSL , 2004, NeuroImage.

[8]  B. Biswal,et al.  Functional connectivity in the motor cortex of resting human brain using echo‐planar mri , 1995, Magnetic resonance in medicine.

[9]  J. Polimeni,et al.  Blipped‐controlled aliasing in parallel imaging for simultaneous multislice echo planar imaging with reduced g‐factor penalty , 2012, Magnetic resonance in medicine.

[10]  Robin M Heidemann,et al.  Controlled aliasing in volumetric parallel imaging (2D CAIPIRINHA) , 2006, Magnetic resonance in medicine.

[11]  Nikolaus Weiskopf,et al.  High-Resolution Functional MRI at 3 T: 3D/2D Echo-Planar Imaging with Optimized Physiological Noise Correction , 2012, Magnetic resonance in medicine.

[12]  Steen Moeller,et al.  Multiband multislice GE‐EPI at 7 tesla, with 16‐fold acceleration using partial parallel imaging with application to high spatial and temporal whole‐brain fMRI , 2010, Magnetic resonance in medicine.

[13]  G. Glover,et al.  Physiological noise in oxygenation‐sensitive magnetic resonance imaging , 2001, Magnetic resonance in medicine.

[14]  J. Haxby,et al.  Localization of Cardiac-Induced Signal Change in fMRI , 1999, NeuroImage.

[15]  D. Larkman,et al.  Use of multicoil arrays for separation of signal from multiple slices simultaneously excited , 2001, Journal of magnetic resonance imaging : JMRI.

[16]  G H Glover,et al.  Image‐based method for retrospective correction of physiological motion effects in fMRI: RETROICOR , 2000, Magnetic resonance in medicine.

[17]  Mark Jenkinson,et al.  Optimizing RetroICor and RetroKCor corrections for multi-shot 3D FMRI acquisitions , 2014, NeuroImage.

[18]  Robin M Heidemann,et al.  Generalized autocalibrating partially parallel acquisitions (GRAPPA) , 2002, Magnetic resonance in medicine.

[19]  Benjamin Zahneisen,et al.  SENSE and simultaneous multislice imaging , 2015, Magnetic resonance in medicine.

[20]  Stephen M. Smith,et al.  Probabilistic independent component analysis for functional magnetic resonance imaging , 2004, IEEE Transactions on Medical Imaging.

[21]  G H Glover,et al.  Three‐dimensional spiral fMRI technique: A comparison with 2D spiral acquisition , 1998, Magnetic resonance in medicine.

[22]  Kawin Setsompop,et al.  Rapid brain MRI acquisition techniques at ultra‐high fields , 2016, NMR in biomedicine.

[23]  P. Boesiger,et al.  SENSE: Sensitivity encoding for fast MRI , 1999, Magnetic resonance in medicine.

[24]  Wietske van der Zwaag,et al.  Improved echo volumar imaging (EVI) for functional MRI , 2006, Magnetic resonance in medicine.

[25]  Mayur Narsude,et al.  Comparison of an 8-Channel and a 32-Channel Coil for High-Resolution fMRI at 7 T , 2013, Brain Topography.

[26]  Hazem H. Refai,et al.  Subject specific BOLD fMRI respiratory and cardiac response functions obtained from global signal , 2013, NeuroImage.

[27]  P. Mansfield,et al.  Echo‐Volumar Imaging (EVI) of the Brain at 3.0 T: First Normal Volunteer and Functional Imaging Results , 1995, Journal of computer assisted tomography.

[28]  Catie Chang,et al.  Corrigendum to “Mapping the end-tidal CO2 response function in the resting-state BOLD fMRI signal: Spatial specificity, test-retest reliability and effect of fMRI sampling rate.” , 2018, NeuroImage.

[29]  Yanle Hu,et al.  Three‐dimensional spiral technique for high‐resolution functional MRI , 2007, Magnetic resonance in medicine.

[30]  Kawin Setsompop,et al.  Wave‐CAIPI for highly accelerated 3D imaging , 2015, Magnetic resonance in medicine.

[31]  Catie Chang,et al.  Mapping the end-tidal CO2 response function in the resting-state BOLD fMRI signal: Spatial specificity, test–retest reliability and effect of fMRI sampling rate , 2015, NeuroImage.

[32]  Lawrence L. Wald,et al.  Three dimensional echo-planar imaging at 7 Tesla , 2010, NeuroImage.

[33]  Thorsten Feiweier,et al.  Reducing sensitivity losses due to respiration and motion in accelerated echo planar imaging by reordering the autocalibration data acquisition , 2016, Magnetic resonance in medicine.

[34]  Kawin Setsompop,et al.  Interslice leakage artifact reduction technique for simultaneous multislice acquisitions , 2014, Magnetic resonance in medicine.

[35]  P. Mansfield Multi-planar image formation using NMR spin echoes , 1977 .

[36]  Peter A. Bandettini,et al.  Integration of motion correction and physiological noise regression in fMRI , 2008, NeuroImage.

[37]  Oliver Speck,et al.  The impact of physiological noise correction on fMRI at 7 T , 2011, NeuroImage.

[38]  Catie Chang,et al.  Influence of heart rate on the BOLD signal: The cardiac response function , 2009, NeuroImage.

[39]  Peter A. Bandettini,et al.  The respiration response function: The temporal dynamics of fMRI signal fluctuations related to changes in respiration , 2008, NeuroImage.

[40]  Susan L. Whitfield-Gabrieli,et al.  Conn: A Functional Connectivity Toolbox for Correlated and Anticorrelated Brain Networks , 2012, Brain Connect..

[41]  Robin M Heidemann,et al.  Accelerated volumetric MRI with a SENSE/GRAPPA combination , 2006, Journal of magnetic resonance imaging : JMRI.

[42]  W van der Zwaag,et al.  Temporal SNR characteristics in segmented 3D‐EPI at 7T , 2012, Magnetic resonance in medicine.

[43]  Karl J. Friston,et al.  Movement‐Related effects in fMRI time‐series , 1996, Magnetic resonance in medicine.

[44]  W. Manning,et al.  Simultaneous acquisition of spatial harmonics (SMASH): Fast imaging with radiofrequency coil arrays , 1997, Magnetic resonance in medicine.

[45]  Stephen M. Smith,et al.  Multiplexed Echo Planar Imaging for Sub-Second Whole Brain FMRI and Fast Diffusion Imaging , 2010, PloS one.

[46]  Thomas Ernst,et al.  Three‐dimensional Fourier encoding of simultaneously excited slices: Generalized acquisition and reconstruction framework , 2014, Magnetic resonance in medicine.

[47]  João Jorge,et al.  Physiological noise in human cerebellar fMRI , 2015, Magnetic Resonance Materials in Physics, Biology and Medicine.

[48]  D. Nishimura,et al.  Reduced aliasing artifacts using variable‐density k‐space sampling trajectories , 2000, Magnetic resonance in medicine.

[49]  Peter A. Bandettini,et al.  Separating respiratory-variation-related fluctuations from neuronal-activity-related fluctuations in fMRI , 2006, NeuroImage.

[50]  Stephen M Smith,et al.  Correspondence of the brain's functional architecture during activation and rest , 2009, Proceedings of the National Academy of Sciences.

[51]  Catie Chang,et al.  Relationship between respiration, end-tidal CO2, and BOLD signals in resting-state fMRI , 2009, NeuroImage.