Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium.
暂无分享,去创建一个
Patrick Wincker | Philippe Marlière | Claudine Médigue | David Vallenet | Laurent Labarre | Stéphane Cruveiller | Annett Kreimeyer | Valérie Barbe | S. Duprat | J. Weissenbach | C. Médigue | P. Marlière | P. Wincker | C. Robert | V. Barbe | D. Vallenet | A. Kreimeyer | S. Oztas | S. Cruveiller | Laurent Labarre | N. Fonknechten | G. Cohen | L. N. Ornston | Jean Weissenbach | Sophie Oztas | L Nicholas Ornston | Catherine Robert | Simone Duprat | Nuria Fonknechten | Georges N Cohen | L. Ornston
[1] W. H. Taylor,et al. PATHWAYS FOR BIOSYNTHESIS OF A BACTERIAL CAPSULAR POLYSACCHARIDE I , 1961, The Journal of biological chemistry.
[2] G. Kowalchuk,et al. Nucleotide sequences transferred by gene conversion in the bacterium Acinetobacter calcoaceticus. , 1995, Gene.
[3] Alex Bateman,et al. The InterPro database, an integrated documentation resource for protein families, domains and functional sites , 2001, Nucleic Acids Res..
[4] Caroline S. Harwood,et al. THE β-KETOADIPATE PATHWAY AND THE BIOLOGY OF SELF-IDENTITY , 1996 .
[5] Y. Takamura,et al. Functions of Malonate Decarboxylase Subunits from Pseudomonas putida , 2003, Bioscience, biotechnology, and biochemistry.
[6] D. Pierson,et al. Dual enzymatic routes to L-tyrosine and L-phenylalanine via pretyrosine in Pseudomonas aeruginosa. , 1977, The Journal of biological chemistry.
[7] E. Juni,et al. Transformation of Acinetobacter calco-aceticus (Bacterium anitratum) , 1969, Journal of bacteriology.
[8] D. Corsini,et al. Differential deposition of suberin phenolic and aliphatic domains and their roles in resistance to infection during potato tuber (Solanum tuberosum L.) wound-healing , 1998 .
[9] K. Watanabe,et al. Characterization, gene cloning and expression of isocitrate lyase involved in the assimilation of one-carbon compounds in Hyphomicrobium methylovorum GM2. , 1997, European journal of biochemistry.
[10] M. Doudoroff,et al. The aerobic pseudomonads: a taxonomic study. , 1966, Journal of general microbiology.
[11] P. Franke,et al. Preparation of R-type lipopolysaccharides ofAcinetobacter calcoaceticus by EDTA-salt extraction , 1989, Current Microbiology.
[12] J. Weissenbach,et al. Genome sequence of the plant pathogen Ralstonia solanacearum , 2002, Nature.
[13] P Green,et al. Base-calling of automated sequencer traces using phred. II. Error probabilities. , 1998, Genome research.
[14] T. Vogel,et al. Opportunistic Colonization Ralstonia solanacearum-Infected Plants by Acinetobacter sp. and Its Natural Competence Development , 2002, Microbial Ecology.
[15] C. Harwood,et al. The beta-ketoadipate pathway and the biology of self-identity. , 1996, Annual review of microbiology.
[16] T. Hartsch,et al. Natural Transformation in Mesophilic and Thermophilic Bacteria: Identification and Characterization of Novel, Closely Related Competence Genes in Acinetobacter sp. Strain BD413 andThermus thermophilus HB27 , 2001, Applied and Environmental Microbiology.
[17] G Achaz,et al. Analysis of intrachromosomal duplications in yeast Saccharomyces cerevisiae: a possible model for their origin. , 2000, Molecular biology and evolution.
[18] Philippe Marlière,et al. Acinetobacter sp. ADP1: an ideal model organism for genetic analysis and genome engineering. , 2004, Nucleic acids research.
[19] John F. Vickrey,et al. Pseudomonas aeruginosa Aspartate Transcarbamoylase , 2002, The Journal of Biological Chemistry.
[20] D. D'Argenio,et al. IS1236, a newly discovered member of the IS3 family, exhibits varied patterns of insertion into the Acinetobacter calcoaceticus chromosome. , 1996, Microbiology.
[21] C. Claudel-Renard,et al. Enzyme-specific profiles for genome annotation: PRIAM. , 2003, Nucleic acids research.
[22] E. Ron,et al. The Active Component of the Bioemulsifier Alasan from Acinetobacter radioresistens KA53 Is an OmpA-Like Protein , 2002, Journal of bacteriology.
[23] R. Morona,et al. Escherichia coli K-12 outer membrane protein (OmpA) as a bacteriophage receptor: analysis of mutant genes expressing altered proteins , 1984, Journal of bacteriology.
[24] Desouky Abdel-El-Haleem,et al. Acinetobacter: environmental and biotechnological applications , 2003 .
[25] R. Koebnik. Structural and Functional Roles of the Surface-Exposed Loops of the β-Barrel Membrane Protein OmpA fromEscherichia coli , 1999, Journal of bacteriology.
[26] Purification and characterization of Acinetobacter calcoaceticus isocitrate lyase , 1991, Journal of bacteriology.
[27] D. Parke. Acquisition, reorganization, and merger of genes: novel management of the β‐ketoadipate pathway in Agrobacterium tumefaciens , 1997 .
[28] Jia Liu,et al. The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000 , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[29] Monica Riley,et al. GenProtEC: an updated and improved analysis of functions of Escherichia coli K-12 proteins , 2004, Nucleic Acids Res..
[30] E. Neidle,et al. Novel nuclear magnetic resonance spectroscopy methods demonstrate preferential carbon source utilization by Acinetobacter calcoaceticus , 1996, Journal of bacteriology.
[31] G. Cohen,et al. Regulation of the Biosynthesis of Amino Acids of the Aspartate Family in Coliform Bacteria and Pseudomonads , 1969, Journal of bacteriology.
[32] A. L. Campbell,et al. Directed introduction of DNA cleavage sites to produce a high-resolution genetic and physical map of the Acinetobacter sp. strain ADP1 (BD413UE) chromosome. , 1997, Microbiology.
[33] F. Neidhart. Escherichia coli and Salmonella. , 1996 .
[34] S. Yamamoto,et al. Isolation and structure elucidation of acinetobactin., a novel siderophore from Acinetobacter baumannii , 1994, Archives of Microbiology.
[35] N. Kaplan,et al. Exopolysaccharide Distribution of and Bioemulsifier Production by Acinetobacter calcoaceticus BD4 and BD413 , 1982, Applied and environmental microbiology.
[36] Cathy H. Wu,et al. UniProt: the Universal Protein knowledgebase , 2004, Nucleic Acids Res..
[37] Rheinallt M. Jones,et al. sal Genes Determining the Catabolism of Salicylate Esters Are Part of a Supraoperonic Cluster of Catabolic Genes in Acinetobacter sp. Strain ADP1 , 2000, Journal of bacteriology.
[38] Wei Zhang,et al. Genetic Organization of Genes Encoding Phenol Hydroxylase, Benzoate 1,2-Dioxygenase Alpha Subunit and Its Regulatory Proteins in Acinetobacter calcoaceticus PHEA-2 , 2003, Current Microbiology.
[39] A. Segura,et al. The Physiological Contribution ofAcinetobacter PcaK, a Transport System That Acts upon Protocatechuate, Can Be Masked by the Overlapping Specificity of VanK , 1999, Journal of bacteriology.
[40] E. Lin,et al. arcA (dye), a global regulatory gene in Escherichia coli mediating repression of enzymes in aerobic pathways. , 1988, Proceedings of the National Academy of Sciences of the United States of America.
[41] S. Lory,et al. Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen , 2000, Nature.
[42] L. N. Ornston,et al. Hydroxycinnamate (hca) Catabolic Genes from Acinetobacter sp. Strain ADP1 Are Repressed by HcaR and Are Induced by Hydroxycinnamoyl-Coenzyme A Thioesters , 2003, Applied and Environmental Microbiology.
[43] Christian Weinel,et al. PseuRECA: genome annotation and gene context analysis for Pseudomonas aeruginosa PAO1 , 2003, Bioinform..
[44] M. Doudoroff,et al. A Study of the Moraxella Group II. Oxidative-negative Species (Genus Acinetobacter) , 1968, Journal of bacteriology.
[45] L. N. Ornston,et al. Unusual ancestry of dehydratases associated with quinate catabolism in Acinetobacter calcoaceticus , 1995, Journal of bacteriology.
[46] P. Green,et al. Consed: a graphical tool for sequence finishing. , 1998, Genome research.
[47] Eduardo Díaz,et al. Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440. , 2002, Environmental microbiology.
[48] O. White,et al. Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. , 2002, Environmental microbiology.
[49] P. Dimroth,et al. Biosynthesis of triphosphoribosyl-dephospho-coenzyme A, the precursor of the prosthetic group of malonate decarboxylase. , 2000, Biochemistry.
[50] P. Green,et al. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. , 1998, Genome research.
[51] J. Crouzet,et al. Cloning and analysis of genes involved in coenzyme B12 biosynthesis in Pseudomonas denitrificans , 1989, Journal of bacteriology.
[52] D. Rimar,et al. Nosocomial multi-drug resistant Acinetobacter baumannii bloodstream infection: risk factors and outcome with ampicillin-sulbactam treatment. , 2003, The Journal of hospital infection.
[53] P. Baumann. Isolation of Acinetobacter from Soil and Water , 1968, Journal of bacteriology.
[54] S. Eddy,et al. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. , 1997, Nucleic acids research.
[55] L. Debussche,et al. The final step in the biosynthesis of hydrogenobyrinic acid is catalyzed by the cobH gene product with precorrin-8x as the substrate , 1992, Journal of bacteriology.
[56] David A. D'Argenio,et al. Genetic Analysis of a Chromosomal Region ContainingvanA and vanB, Genes Required for Conversion of Either Ferulate or Vanillate to Protocatechuate inAcinetobacter , 1999, Journal of bacteriology.
[57] M. Riley,et al. Functions of the gene products of Escherichia coli , 1993, Microbiological reviews.
[58] S. Duprat,et al. Genomic Exploration of the Hemiascomycetous Yeasts: 2. Data generation and processing , 2000, FEBS letters.
[59] E. Neidle,et al. Genome plasticity in Acinetobacter: new degradative capabilities acquired by the spontaneous amplification of large chromosomal segments , 2003, Molecular microbiology.
[60] Grégory Nuel,et al. AMIGene: Annotation of MIcrobial Genes , 2003, Nucleic Acids Res..
[61] M. Bally,et al. A direct sulfhydrylation pathway is used for methionine biosynthesis in Pseudomonas aeruginosa. , 1995, Microbiology.
[62] C. Herzberg,et al. comB, a novel competence gene required for natural transformation of Acinetobacter sp. BD413: identification, characterization, and analysis of growth-phase-dependent regulation , 2000, Archives of Microbiology.
[63] J. Koo,et al. Functional evaluation of the genes involved in malonate decarboxylation by Acinetobacter calcoaceticus. , 1999, European journal of biochemistry.
[64] Kim Rutherford,et al. Artemis: sequence visualization and annotation , 2000, Bioinform..
[65] ComP, a Pilin-Like Protein Essential for Natural Competence in Acinetobacter sp. Strain BD413: Regulation, Modification, and Cellular Localization , 2000, Journal of bacteriology.
[66] W. H. Taylor,et al. Pathways for biosynthesis of a bacterial capsular polysaccharide. I. Carbohydrate metabolism and terminal oxidation mechanisms of a capsuleproducing coccus. , 1961, Journal of bacteriology.
[67] B. Averhoff,et al. Identification and Characterization of ComE and ComF, Two Novel Pilin-Like Competence Factors Involved in Natural Transformation of Acinetobacter sp. Strain BD413 , 1999, Applied and Environmental Microbiology.
[68] B. Averhoff,et al. Identification and Characterization of a Novel Competence Gene,comC, Required for DNA Binding and Uptake inAcinetobacter sp. Strain BD413 , 1998, Journal of bacteriology.
[69] A. Steinbüchel,et al. Molecular characterization of the Pseudomonas putida 2,3-butanediol catabolic pathway. , 1994, FEMS microbiology letters.
[70] M. Bernards,et al. The poly(phenolic) domain of potato suberin: a non-lignin cell wall bio-polymer. , 2001, Phytochemistry.
[71] W. H. Taylor,et al. Pathways for biosynthesis of a bacterial capsular polysaccharide. I. Characterization of the organism and polysaccharide. , 1961, Journal of bacteriology.
[72] S. Yamamoto,et al. Identification and analysis of a gene encoding L-2,4-diaminobutyrate:2-ketoglutarate 4-aminotransferase involved in the 1,3-diaminopropane production pathway in Acinetobacter baumannii , 1997, Journal of bacteriology.
[73] N. Majdalani,et al. Small non‐coding RNAs, co‐ordinators of adaptation processes in Escherichia coli: the RpoS paradigm , 2003, Molecular microbiology.
[74] P. Gerner-Smidt,et al. Phylogenetic relationship of the twenty-one DNA groups of the genus Acinetobacter as revealed by 16S ribosomal DNA sequence analysis. , 1997, International journal of systematic bacteriology.
[75] A. L. Campbell,et al. Similarities between the antABC-Encoded Anthranilate Dioxygenase and the benABC-Encoded Benzoate Dioxygenase of Acinetobacter sp. Strain ADP1 , 1998, Journal of bacteriology.
[76] H Nielsen,et al. Machine learning approaches for the prediction of signal peptides and other protein sorting signals. , 1999, Protein engineering.
[77] B. Averhoff,et al. Type IV pili-related natural transformation systems: DNA transport in mesophilic and thermophilic bacteria , 2003, Archives of Microbiology.
[78] M. A. Prieto,et al. Biodegradation of Aromatic Compounds byEscherichia coli , 2001, Microbiology and Molecular Biology Reviews.
[79] S. Yamamoto,et al. Sequence analysis of the gene encoding a novel l-2,4-diaminobutyrate decarboxylase of Acinetobacter baumannii: similarity to the group II amino acid decarboxylases , 1996, Archives of Microbiology.
[80] T. Vogel,et al. Intergeneric transfer of chromosomal and conjugative plasmid genes between Ralstonia solanacearum and Acinetobacter sp. BD413. , 2003, Molecular plant-microbe interactions : MPMI.
[81] G. Cohen,et al. Regulation by methionine of the synthesis of a third aspartokinase and of a second homoserine dehydrogenase in Escherichia coli K 12. , 1967, Biochimica et biophysica acta.
[82] Monica Riley,et al. A functional update of the Escherichia coli K-12 genome , 2001, Genome Biology.
[83] P. Schürmann,et al. The Presence of an Iron-Sulfur Cluster in Adenosine 5′-Phosphosulfate Reductase Separates Organisms Utilizing Adenosine 5′-Phosphosulfate and Phosphoadenosine 5′-Phosphosulfate for Sulfate Assimilation* , 2002, The Journal of Biological Chemistry.
[84] G. Kowalchuk,et al. Unusual G + C content and codon usage in catIJF, a segment of the ben-cat supra-operonic cluster in the Acinetobacter calcoaceticus chromosome. , 1994, Gene.
[85] N. Kaplan,et al. Reconstitution of emulsifying activity of Acinetobacter calcoaceticus BD4 emulsan by using pure polysaccharide and protein , 1987, Applied and environmental microbiology.
[86] A. Krogh,et al. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. , 2001, Journal of molecular biology.
[87] R. Manfredi,et al. Acinetobacter Infections in Patients with Human Immunodeficiency Virus Infection: Microbiological and Clinical Epidemiology , 2000, Chemotherapy.
[88] G. Rieder,et al. An OmpA-Like Protein from Acinetobacterspp. Stimulates Gastrin and Interleukin-8 Promoters , 2000, Infection and Immunity.
[89] B. Goldman,et al. Genome Sequence of the Plant Pathogen and Biotechnology Agent Agrobacterium tumefaciens C58 , 2001, Science.
[90] E. Stadtman,et al. FEEDBACK INHIBITION AND REPRESSION OF ASPARTOKINASE ACTIVITY IN ECHERICHIA COLI * , 1961, Annals of the New York Academy of Sciences.