Beyond Glycolysis: GAPDHs Are Multi-functional Enzymes Involved in Regulation of ROS, Autophagy, and Plant Immune Responses

Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is an important enzyme in energy metabolism with diverse cellular regulatory roles in vertebrates, but few reports have investigated the importance of plant GAPDH isoforms outside of their role in glycolysis. While animals possess one GAPDH isoform, plants possess multiple isoforms. In this study, cell biological and genetic approaches were used to investigate the role of GAPDHs during plant immune responses. Individual Arabidopsis GAPDH knockouts (KO lines) exhibited enhanced disease resistance phenotypes upon inoculation with the bacterial plant pathogen Pseudomonas syringae pv. tomato. KO lines exhibited accelerated programmed cell death and increased electrolyte leakage in response to effector triggered immunity. Furthermore, KO lines displayed increased basal ROS accumulation as visualized using the fluorescent probe H2DCFDA. The gapa1-2 and gapc1 KOs exhibited constitutive autophagy phenotypes in the absence of nutrient starvation. Due to the high sequence conservation between vertebrate and plant cytosolic GAPDH, our experiments focused on cytosolic GAPC1 cellular dynamics using a complemented GAPC1-GFP line. Confocal imaging coupled with an endocytic membrane marker (FM4-64) and endosomal trafficking inhibitors (BFA, Wortmannin) demonstrated cytosolic GAPC1 is localized to the plasma membrane and the endomembrane system, in addition to the cytosol and nucleus. After perception of bacterial flagellin, GAPC1 dynamically responded with a significant increase in size of fluorescent puncta and enhanced nuclear accumulation. Taken together, these results indicate that plant GAPDHs can affect multiple aspects of plant immunity in diverse sub-cellular compartments.

[1]  Jörg Durner,et al.  Proteomic Identification of S-Nitrosylated Proteins in Arabidopsis1[w] , 2005, Plant Physiology.

[2]  K Meyer-Siegler,et al.  A human nuclear uracil DNA glycosylase is the 37-kDa subunit of glyceraldehyde-3-phosphate dehydrogenase. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[3]  E. Ver Loren van Themaat,et al.  Salicylic acid antagonism of EDS1-driven cell death is important for immune and oxidative stress responses in Arabidopsis. , 2010, The Plant journal : for cell and molecular biology.

[4]  G. Coaker,et al.  Recognition of bacterial plant pathogens: local, systemic and transgenerational immunity. , 2013, The New phytologist.

[5]  Kirk Czymmek,et al.  Autophagy Regulates Programmed Cell Death during the Plant Innate Immune Response , 2005, Cell.

[6]  P. Trost,et al.  The C-terminal Extension of Glyceraldehyde-3-phosphate Dehydrogenase Subunit B Acts as an Autoinhibitory Domain Regulated by Thioredoxins and Nicotinamide Adenine Dinucleotide* , 2002, The Journal of Biological Chemistry.

[7]  C. Lindermayr,et al.  Regulation of plant cytosolic glyceraldehyde 3-phosphate dehydrogenase isoforms by thiol modifications. , 2008, Physiologia plantarum.

[8]  B. Staskawicz,et al.  Characterization of the Pseudomonas syringae pv. tomato AvrRpt2 protein: demonstration of secretion and processing during bacterial pathogenesis , 1999, Molecular microbiology.

[9]  Juan Segura,et al.  Plastidial Glyceraldehyde-3-Phosphate Dehydrogenase Deficiency Leads to Altered Root Development and Affects the Sugar and Amino Acid Balance in Arabidopsis1[W] , 2009, Plant Physiology.

[10]  D. Bassham,et al.  Visualization of autophagy in Arabidopsis using the fluorescent dye monodansylcadaverine and a GFP-AtATG8e fusion protein. , 2005, The Plant journal : for cell and molecular biology.

[11]  R. Vierstra,et al.  Autophagy: a multifaceted intracellular system for bulk and selective recycling. , 2012, Trends in plant science.

[12]  C. Ritzenthaler,et al.  Brefeldin A: Deciphering an Enigmatic Inhibitor of Secretion , 2002, Plant Physiology.

[13]  D. Corda,et al.  Stimulation of endogenous ADP-ribosylation by brefeldin A. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[14]  R. Xavier,et al.  mTOR- and HIF-1α–mediated aerobic glycolysis as metabolic basis for trained immunity , 2014, Science.

[15]  M. Becker Antibodies A Laboratory Manual , 2016 .

[16]  Z. Elazar,et al.  Reactive oxygen species are essential for autophagy and specifically regulate the activity of Atg4 , 2007, The EMBO journal.

[17]  R. Rosenfeld Nature , 2009, Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery.

[18]  N. Mizushima,et al.  The role of Atg proteins in autophagosome formation. , 2011, Annual review of cell and developmental biology.

[19]  D. Gomez-Casati,et al.  Characterization of an Arabidopsis thaliana mutant lacking a cytosolic non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase , 2006, Plant Molecular Biology.

[20]  J. Hancock,et al.  Proteomic identification of glyceraldehyde 3-phosphate dehydrogenase as an inhibitory target of hydrogen peroxide in Arabidopsis. , 2005, Plant physiology and biochemistry : PPB.

[21]  M. Sirover,et al.  Subcellular dynamics of multifunctional protein regulation: Mechanisms of GAPDH intracellular translocation , 2012, Journal of cellular biochemistry.

[22]  E. Tisdale Glyceraldehyde-3-phosphate Dehydrogenase Is Required for Vesicular Transport in the Early Secretory Pathway* , 2001, The Journal of Biological Chemistry.

[23]  H. Brinkmann,et al.  Origin, Evolution, and Metabolic Role of a Novel Glycolytic GAPDH Enzyme Recruited by Land Plant Plastids , 2003, Journal of Molecular Evolution.

[24]  J. Chory,et al.  The growth-defense pivot: crisis management in plants mediated by LRR-RK surface receptors. , 2014, Trends in biochemical sciences.

[25]  C. Koch,et al.  The importance of sodium pyruvate in assessing damage produced by hydrogen peroxide. , 1997, Free radical biology & medicine.

[26]  S. Clough,et al.  Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. , 1998, The Plant journal : for cell and molecular biology.

[27]  Jonathan D. G. Jones,et al.  Ubiquitin ligase-associated protein SGT1 is required for host and nonhost disease resistance in plants , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[28]  Jonathan D. G. Jones,et al.  Arabidopsis gp91phox homologues AtrbohD and AtrbohF are required for accumulation of reactive oxygen intermediates in the plant defense response , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[29]  T. Boller,et al.  FLS2: an LRR receptor-like kinase involved in the perception of the bacterial elicitor flagellin in Arabidopsis. , 2000, Molecular cell.

[30]  T. Inui,et al.  The Active Site Cysteine of the Proapoptotic Protein Glyceraldehyde-3-phosphate Dehydrogenase Is Essential in Oxidative Stress-induced Aggregation and Cell Death* , 2007, Journal of Biological Chemistry.

[31]  Jianhua Zhang,et al.  Cellular metabolic and autophagic pathways: traffic control by redox signaling. , 2013, Free radical biology & medicine.

[32]  J. Ecker,et al.  Arabidopsis RIN4 Is a Target of the Type III Virulence Effector AvrRpt2 and Modulates RPS2-Mediated Resistance , 2003, Cell.

[33]  Koichiro Tamura,et al.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. , 2013, Molecular biology and evolution.

[34]  P. Trost,et al.  Plant cytoplasmic GAPDH: redox post-translational modifications and moonlighting properties , 2013, Front. Plant Sci..

[35]  Santiago,et al.  IRE1/bZIP60-Mediated Unfolded Protein Response Plays Distinct Roles in Plant Immunity and Abiotic Stress Responses , 2012, PloS one.

[36]  R. Fischer,et al.  Uptake of a Fluorescent Marker in Plant Cells Is Sensitive to Brefeldin A and Wortmannin Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010339. , 2002, The Plant Cell Online.

[37]  R. Scheibe,et al.  Reductive modification and nonreductive activation of purified spinach chloroplast NADP-dependent glyceraldehyde-3-phosphate dehydrogenase. , 1995, Archives of biochemistry and biophysics.

[38]  S. Spanò,et al.  CtBP3/BARS drives membrane fission in dynamin-independent transport pathways , 2005, Nature Cell Biology.

[39]  C. Lindermayr,et al.  Proteomic analysis of Arabidopsis protein S-nitrosylation in response to inoculation with Pseudomonas syringae , 2011, Acta Physiologiae Plantarum.

[40]  F. Saudou,et al.  Vesicular Glycolysis Provides On-Board Energy for Fast Axonal Transport , 2013, Cell.

[41]  S. Davis Faculty Opinions recommendation of Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. , 2006 .

[42]  C. Foyer,et al.  Redox Homeostasis and Antioxidant Signaling: A Metabolic Interface between Stress Perception and Physiological Responses , 2005, The Plant Cell Online.

[43]  C. Zipfel,et al.  Pseudomonas HopU1 modulates plant immune receptor levels by blocking the interaction of their mRNAs with GRP7 , 2013, The EMBO journal.

[44]  S. Chisholm,et al.  Host-Microbe Interactions: Shaping the Evolution of the Plant Immune Response , 2022 .

[45]  N. Read,et al.  FM‐dyes as experimental probes for dissecting vesicle trafficking in living plant cells , 2004, Journal of microscopy.

[46]  S. Dinesh-Kumar,et al.  Differential processing of Arabidopsis ubiquitin-like Atg8 autophagy proteins by Atg4 cysteine proteases , 2013, Proceedings of the National Academy of Sciences.

[47]  T. Holowka,et al.  Toll-like receptor-induced changes in glycolytic metabolism regulate dendritic cell activation. , 2010, Blood.

[48]  D. MacLean,et al.  Spatio-Temporal Cellular Dynamics of the Arabidopsis Flagellin Receptor Reveal Activation Status-Dependent Endosomal Sorting[C][W] , 2012, Plant Cell.

[49]  B. Thomma,et al.  Of PAMPs and Effectors: The Blurred PTI-ETI Dichotomy[OA] , 2011, Plant Cell.

[50]  C. Colussi,et al.  H2O2‐induced block of glycolysis as an active ADP‐ribosylation reaction protecting cells from apoptosis , 2000, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[51]  S. Rothstein,et al.  Heat induces the splicing by IRE1 of a mRNA encoding a transcription factor involved in the unfolded protein response in Arabidopsis , 2011, Proceedings of the National Academy of Sciences.

[52]  P. D. Nagy,et al.  Tomato bushy stunt virus co-opts the RNA-binding function of a host metabolic enzyme for viral genomic RNA synthesis. , 2008, Cell host & microbe.

[53]  A. Mushegian,et al.  NleB, a bacterial effector with glycosyltransferase activity, targets GAPDH function to inhibit NF-κB activation. , 2013, Cell host & microbe.

[54]  M. Sirover On the functional diversity of glyceraldehyde-3-phosphate dehydrogenase: biochemical mechanisms and regulatory control. , 2011, Biochimica et biophysica acta.

[55]  L. Anderson,et al.  Cytosolic glyceraldehyde-3-P dehydrogenase and the B subunit of the chloroplast enzyme are present in the pea leaf nucleus , 2004, Protoplasma.

[56]  D. Bassham,et al.  Degradation of Oxidized Proteins by Autophagy during Oxidative Stress in Arabidopsis1[W][OA] , 2006, Plant Physiology.

[57]  Pascal Barbry,et al.  GAPDH and Autophagy Preserve Survival after Apoptotic Cytochrome c Release in the Absence of Caspase Activation , 2007, Cell.

[58]  R. Scheibe,et al.  Transfer of a Redox-Signal through the Cytosol by Redox-Dependent Microcompartmentation of Glycolytic Enzymes at Mitochondria and Actin Cytoskeleton , 2013, Front. Plant Sci..

[59]  Uwe Conrath,et al.  Systemic Acquired Resistance , 2006, Plant signaling & behavior.

[60]  Jonathan D. G. Jones,et al.  Autophagic Components Contribute to Hypersensitive Cell Death in Arabidopsis , 2009, Cell.

[61]  A. Sawa,et al.  Glyceraldehyde-3-phosphate Dehydrogenase Aggregate Formation Participates in Oxidative Stress-induced Cell Death* , 2009, The Journal of Biological Chemistry.

[62]  P. Trost,et al.  The thioredoxin‐independent isoform of chloroplastic glyceraldehyde‐3‐phosphate dehydrogenase is selectively regulated by glutathionylation , 2007, The FEBS journal.

[63]  M. G. Kim,et al.  Two Pseudomonas syringae Type III Effectors Inhibit RIN4-Regulated Basal Defense in Arabidopsis , 2005, Cell.

[64]  A. Sawa,et al.  The diverse functions of GAPDH: views from different subcellular compartments. , 2011, Cellular signalling.

[65]  E. Cho,et al.  Analysis of the Arabidopsis nuclear proteome and its response to cold stress. , 2003, The Plant journal : for cell and molecular biology.

[66]  A. Nebenführ,et al.  The FAST technique: a simplified Agrobacterium-based transformation method for transient gene expression analysis in seedlings of Arabidopsis and other plant species , 2009, Plant Methods.

[67]  C. Zipfel Early molecular events in PAMP-triggered immunity. , 2009, Current opinion in plant biology.

[68]  L. Anderson,et al.  Pea chloroplast glyceraldehyde-3-phosphate dehydrogenase has uracil glycosylase activity. , 1999, Archives of biochemistry and biophysics.

[69]  Y. Niwa,et al.  Development of series of gateway binary vectors, pGWBs, for realizing efficient construction of fusion genes for plant transformation. , 2007, Journal of bioscience and bioengineering.

[70]  P. Trost,et al.  Nuclear Accumulation of Cytosolic Glyceraldehyde-3-Phosphate Dehydrogenase in Cadmium-Stressed Arabidopsis Roots1[C][W] , 2013, Plant Physiology.

[71]  K. Shirasu,et al.  HSP90 interacts with RAR1 and SGT1 and is essential for RPS2-mediated disease resistance in Arabidopsis , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[72]  P. Laktionov,et al.  Role of glyceraldehyde-3-phosphate dehydrogenase in vesicular transport from Golgi apparatus to endoplasmic reticulum , 2008, Biochemistry (Moscow).

[73]  N. Warthmann,et al.  Autoimmune Response as a Mechanism for a Dobzhansky-Muller-Type Incompatibility Syndrome in Plants , 2007, PLoS biology.

[74]  M. Badger,et al.  Specific reduction of chloroplast glyceraldehyde-3-phosphate dehydrogenase activity by antisense RNA reduces CO2 assimilation via a reduction in ribulose bisphosphate regeneration in transgenic tobacco plants , 2004, Planta.

[75]  P. Roepstorff,et al.  Proteomic analysis of S‐nitrosylated proteins in Arabidopsis thaliana undergoing hypersensitive response , 2008, Proteomics.

[76]  Lorenzo Galluzzi,et al.  Metabolic control of cell death , 2014, Science.

[77]  S. Spoel,et al.  How do plants achieve immunity? Defence without specialized immune cells , 2012, Nature Reviews Immunology.

[78]  D. Gomez-Casati,et al.  Characterization of Arabidopsis Lines Deficient in GAPC-1, a Cytosolic NAD-Dependent Glyceraldehyde-3-Phosphate Dehydrogenase1[C] , 2008, Plant Physiology.

[79]  R. Gross,et al.  Rapid plasmenylethanolamine-selective fusion of membrane bilayers catalyzed by an isoform of glyceraldehyde-3-phosphate dehydrogenase: discrimination between glycolytic and fusogenic roles of individual isoforms. , 1995, Biochemistry.

[80]  J. Kangasjärvi,et al.  ROS-talk – how the apoplast, the chloroplast, and the nucleus get the message through , 2012, Front. Plant Sci..

[81]  G. Edelman,et al.  Methods in chloroplast molecular biology , 1982 .

[82]  D. Klessig,et al.  Light-dependent hypersensitive response and resistance signaling against Turnip Crinkle Virus in Arabidopsis. , 2006, The Plant journal : for cell and molecular biology.

[83]  S. Snyder,et al.  S-nitrosylated GAPDH initiates apoptotic cell death by nuclear translocation following Siah1 binding , 2005, Nature Cell Biology.

[84]  Wenhua Zhang,et al.  Cytosolic Glyceraldehyde-3-Phosphate Dehydrogenases Interact with Phospholipase Dδ to Transduce Hydrogen Peroxide Signals in the Arabidopsis Response to Stress[C][W] , 2012, Plant Cell.

[85]  K. Folta,et al.  Isolation of Arabidopsis nuclei and measurement of gene transcription rates using nuclear run-on assays , 2006, Nature Protocols.

[86]  B. Beutler,et al.  Plant and Animal Sensors of Conserved Microbial Signatures , 2010, Science.

[87]  D. Klessig,et al.  Active oxygen species in the induction of plant systemic acquired resistance by salicylic acid. , 1993, Science.

[88]  G. Preston Pseudomonas syringae pv. tomato: the right pathogen, of the right plant, at the right time. , 2000, Molecular plant pathology.

[89]  Martina Beck,et al.  ESCRT-I Mediates FLS2 Endosomal Sorting and Plant Immunity , 2013, PLoS genetics.

[90]  Sang Yeol Lee,et al.  Suppression of reactive oxygen species by glyceraldehyde-3-phosphate dehydrogenase. , 2008, Phytochemistry.

[91]  Xuemin Wang,et al.  Phosphatidic Acid Binds to Cytosolic Glyceraldehyde-3-phosphate Dehydrogenase and Promotes Its Cleavage in Arabidopsis * , 2013, The Journal of Biological Chemistry.

[92]  D. Green,et al.  Novel roles for GAPDH in cell death and carcinogenesis , 2009, Cell Death and Differentiation.