Metabolic engineering of Saccharomyces cerevisiae for production of very long chain fatty acid-derived chemicals

Production of chemicals and biofuels through microbial fermentation is an economical and sustainable alternative for traditional chemical synthesis. Here we present the construction of a Saccharomyces cerevisiae platform strain for high-level production of very-long-chain fatty acid (VLCFA)-derived chemicals. Through rewiring the native fatty acid elongation system and implementing a heterologous Mycobacteria FAS I system, we establish an increased biosynthesis of VLCFAs in S. cerevisiae. VLCFAs can be selectively modified towards the fatty alcohol docosanol (C22H46O) by expressing a specific fatty acid reductase. Expression of this enzyme is shown to impair cell growth due to consumption of VLCFA-CoAs. We therefore implement a dynamic control strategy for separating cell growth from docosanol production. We successfully establish high-level and selective docosanol production of 83.5 mg l−1 in yeast. This approach will provide a universal strategy towards the production of similar high value chemicals in a more scalable, stable and sustainable manner.

[1]  Molecular and Functional Analysis of Three Fatty Acyl-CoA Reductases with Distinct Substrate Specificities in Copepod Calanus finmarchicus , 2012, Marine Biotechnology.

[2]  V. Siewers,et al.  Production of fatty acid-derived oleochemicals and biofuels by synthetic yeast cell factories , 2016, Nature Communications.

[3]  R. Schneiter,et al.  A yeast acetyl coenzyme A carboxylase mutant links very-long-chain fatty acid synthesis to the structure and function of the nuclear membrane-pore complex , 1996, Molecular and cellular biology.

[4]  J. Keasling,et al.  Metabolic engineering of Saccharomyces cerevisiae for production of fatty acid-derived biofuels and chemicals. , 2014, Metabolic engineering.

[5]  P. Tvrdik,et al.  Role of a New Mammalian Gene Family in the Biosynthesis of Very Long Chain Fatty Acids and Sphingolipids , 2000, The Journal of cell biology.

[6]  Intawat Nookaew,et al.  Fast and accurate preparation fatty acid methyl esters by microwave-assisted derivatization in the yeast Saccharomyces cerevisiae , 2012, Applied Microbiology and Biotechnology.

[7]  A. Kihara Very long-chain fatty acids: elongation, physiology and related disorders. , 2012, Journal of biochemistry.

[8]  Tyler J. Ford,et al.  Tailored fatty acid synthesis via dynamic control of fatty acid elongation , 2013, Proceedings of the National Academy of Sciences.

[9]  K. Kaneda,et al.  Distribution of C22‐, C24‐ and C26‐α‐Unit‐Containing Mycolic Acid Homologues in Mycobacteria , 1995 .

[10]  René Lessire,et al.  Three Arabidopsis Fatty Acyl-Coenzyme A Reductases, FAR1, FAR4, and FAR5, Generate Primary Fatty Alcohols Associated with Suberin Deposition1[C][W][OA] , 2010, Plant Physiology.

[11]  Jens Nielsen,et al.  Improving Production of Malonyl Coenzyme A-Derived Metabolites by Abolishing Snf1-Dependent Regulation of Acc1 , 2014, mBio.

[12]  R. Milo,et al.  Promoters maintain their relative activity levels under different growth conditions , 2013, Molecular systems biology.

[13]  Zhonghua Wang,et al.  Molecular Characterization of TaFAR1 Involved in Primary Alcohol Biosynthesis of Cuticular Wax in Hexaploid Wheat. , 2015, Plant & cell physiology.

[14]  Jay D Keasling,et al.  Multiplex metabolic pathway engineering using CRISPR/Cas9 in Saccharomyces cerevisiae. , 2015, Metabolic engineering.

[15]  S. Kikuchi,et al.  Purification and characterization of an unusually large fatty acid synthase from Mycobacterium tuberculosis var. bovis BCG. , 1992, Archives of biochemistry and biophysics.

[16]  D. Katz,et al.  Antiviral activity of 1-docosanol, an inhibitor of lipid-enveloped viruses including herpes simplex. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[17]  Zengyi Shao,et al.  DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways , 2008, Nucleic acids research.

[18]  T. Miwa Structural determination and uses of jojoba oil , 1984 .

[19]  W. A. Scheffers,et al.  Effect of benzoic acid on metabolic fluxes in yeasts: A continuous‐culture study on the regulation of respiration and alcoholic fermentation , 1992, Yeast.

[20]  Z. Deng,et al.  Metabolic engineering of fatty acyl-ACP reductase-dependent pathway to improve fatty alcohol production in Escherichia coli. , 2014, Metabolic engineering.

[21]  Verena Siewers,et al.  Fatty Acid-Derived Biofuels and Chemicals Production in Saccharomyces cerevisiae , 2014, Front. Bioeng. Biotechnol..

[22]  D. Taylor,et al.  Brassica carinata – a new molecular farming platform for delivering bio‐industrial oil feedstocks: case studies of genetic modifications to improve very long‐chain fatty acid and oil content in seeds , 2010 .

[23]  S. Baud,et al.  Multifunctional acetyl-CoA carboxylase 1 is essential for very long chain fatty acid elongation and embryo development in Arabidopsis. , 2003, The Plant journal : for cell and molecular biology.

[24]  D. Boehringer,et al.  7.5-Å cryo-em structure of the mycobacterial fatty acid synthase. , 2013, Journal of molecular biology.

[25]  O. Rowland,et al.  Plant fatty acyl reductases: enzymes generating fatty alcohols for protective layers with potential for industrial applications. , 2012, Plant science : an international journal of experimental plant biology.

[26]  Jens Nielsen,et al.  Impact of synthetic biology and metabolic engineering on industrial production of fine chemicals. , 2015, Biotechnology advances.

[27]  J. Nielsen,et al.  Long-chain alkane production by the yeast Saccharomyces cerevisiae. , 2015, Biotechnology and bioengineering.

[28]  Jack T. Pronk,et al.  CRISPR/Cas9: a molecular Swiss army knife for simultaneous introduction of multiple genetic modifications in Saccharomyces cerevisiae , 2015, FEMS yeast research.

[29]  J. Keasling,et al.  Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids , 2012, Nature Biotechnology.

[30]  Salmiah Ahmad,et al.  Palm oil and palm kernel oil as raw materials for basic oleochemicals and biodiesel , 2007 .

[31]  W. N. Chen,et al.  Enhanced production of fatty alcohols by engineering the TAGs synthesis pathway in Saccharomyces cerevisiae , 2015, Biotechnology and bioengineering.

[32]  V. Jannin,et al.  Hot-melt coating with lipid excipients. , 2013, International journal of pharmaceutics.

[33]  Huimin Zhao,et al.  Metabolic engineering of Saccharomyces cerevisiae to improve 1-hexadecanol production. , 2015, Metabolic engineering.

[34]  K. Gable,et al.  Members of the Arabidopsis FAE1-like 3-Ketoacyl-CoA Synthase Gene Family Substitute for the Elop Proteins of Saccharomyces cerevisiae* , 2006, Journal of Biological Chemistry.

[35]  Florian David,et al.  EasyClone: method for iterative chromosomal integration of multiple genes in Saccharomyces cerevisiae , 2013, FEMS yeast research.

[36]  Jaime Wisniak,et al.  Potential uses of jojoba oil and meal — a review , 1994 .

[37]  J. Keasling,et al.  Microbial production of fatty-acid-derived fuels and chemicals from plant biomass , 2010, Nature.

[38]  V. Siewers,et al.  Harnessing Yeast Peroxisomes for Biosynthesis of Fatty-Acid-Derived Biofuels and Chemicals with Relieved Side-Pathway Competition. , 2016, Journal of the American Chemical Society.

[39]  U. Hoja,et al.  A downstream regulatory element located within the coding sequence mediates autoregulated expression of the yeast fatty acid synthase gene FAS2 by the FAS1 gene product. , 2001, Nucleic acids research.

[40]  J. Pronk,et al.  Engineering cytosolic acetyl-coenzyme A supply in Saccharomyces cerevisiae: Pathway stoichiometry, free-­energy conservation and redox-cofactor balancing , 2016 .

[41]  Wei Gao,et al.  Modular pathway engineering of diterpenoid synthases and the mevalonic acid pathway for miltiradiene production. , 2012, Journal of the American Chemical Society.

[42]  Dong-Yup Lee,et al.  Combinatorial metabolic engineering of Saccharomyces cerevisiae for terminal alkene production , 2015, bioRxiv.

[43]  Jay D. Keasling,et al.  Production of amorphadiene in yeast, and its conversion to dihydroartemisinic acid, precursor to the antimalarial agent artemisinin , 2012, Proceedings of the National Academy of Sciences.

[44]  D. Toke,et al.  ELO2 and ELO3, Homologues of theSaccharomyces cerevisiae ELO1 Gene, Function in Fatty Acid Elongation and Are Required for Sphingolipid Formation* , 1997, The Journal of Biological Chemistry.

[45]  J. Nielsen,et al.  Metabolic engineering of Saccharomyces cerevisiae for production of fatty acid ethyl esters, an advanced biofuel, by eliminating non-essential fatty acid utilization pathways , 2014 .

[46]  A. Schirmer,et al.  Microbial Biosynthesis of Alkanes , 2010, Science.

[47]  S. Kohlwein,et al.  Fatty acid synthesis and elongation in yeast. , 2007, Biochimica et biophysica acta.