The Endometrial Transcription Landscape of MRKH Syndrome

The Mayer-Rokitansky-Küster-Hauser (MRKH) syndrome (OMIM 277000) is characterized by agenesis of the uterus and upper part of the vagina in females with normal ovarian function. While genetic causes have been identified for a small subset of patients and epigenetic mechanisms presumably contribute to the pathogenic unfolding, too, the etiology of the syndrome has remained largely enigmatic. A comprehensive understanding of gene activity in the context of the disease is crucial to identify etiological components and their potential interplay. So far, this understanding is lacking, primarily due to the scarcity of samples and suitable tissue. In order to close this gap, we profiled endometrial tissue of uterus rudiments in a large cohort of MRKH patients using RNA-seq and thereby provide a genome-wide view on the altered transcription landscape of the MRKH syndrome. Differential and co-expression analyses of the data identified cellular processes and candidate genes that converge on a core network of interconnected regulators that emerge as pivotal for the perturbed expression space. With these results and browsable access to the rich data through an online tool we seek to accelerate research to unravel the underlying biology of this syndrome.

[1]  E. Devouche,et al.  Genital tract and reproductive characteristics in daughters of women and men prenatally exposed to diethylstilbestrol (DES). , 2019, Therapie.

[2]  P. Cooke,et al.  The histone methyltransferase EZH2 is required for normal uterine development and function in mice† , 2019, Biology of Reproduction.

[3]  Yang Shi,et al.  Roles and regulation of histone methylation in animal development , 2019, Nature Reviews Molecular Cell Biology.

[4]  J. Vilo,et al.  g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update) , 2019, Nucleic Acids Res..

[5]  D. Khanna,et al.  Inhibition of EZH2 prevents fibrosis and restores normal angiogenesis in scleroderma , 2019, Proceedings of the National Academy of Sciences.

[6]  V. Shah,et al.  Enhancer of Zeste Homologue 2 Inhibition Attenuates TGF-β Dependent Hepatic Stellate Cell Activation and Liver Fibrosis , 2018, Cellular and molecular gastroenterology and hepatology.

[7]  S. Quake,et al.  Single cell RNAseq provides a molecular and cellular cartography of changes to the human endometrium through the menstrual cycle , 2018, bioRxiv.

[8]  A. Sinclair,et al.  The cell biology and molecular genetics of Müllerian duct development , 2018, Wiley interdisciplinary reviews. Developmental biology.

[9]  Wyeth W. Wasserman,et al.  TFEA.ChIP: a tool kit for transcription factor binding site enrichment analysis capitalizing on ChIP-seq datasets , 2019, Bioinform..

[10]  P. Wieacker,et al.  Clinical and genetic aspects of Mayer–Rokitansky–Küster–Hauser syndrome , 2018, medizinische genetik.

[11]  Yiping Shen,et al.  Copy number variation and regions of homozygosity analysis in patients with MÜLLERIAN aplasia , 2018, Molecular Cytogenetics.

[12]  S. Robboy,et al.  New insights into human female reproductive tract development. , 2017, Differentiation; research in biological diversity.

[13]  L. Postovit,et al.  Epithelial-to-Mesenchymal Transition in the Female Reproductive Tract: From Normal Functioning to Disease Pathology , 2017, Front. Oncol..

[14]  Rob Patro,et al.  Salmon provides fast and bias-aware quantification of transcript expression , 2017, Nature Methods.

[15]  B. Schönfisch,et al.  Decidualization is Impaired in Endometrial Stromal Cells from Uterine Rudiments in Mayer-Rokitansky-Küster-Hauser Syndrome , 2017, Cellular Physiology and Biochemistry.

[16]  Yifan Lian,et al.  Long noncoding RNA HOXA-AS2 represses P21 and KLF2 expression transcription by binding with EZH2, LSD1 in colorectal cancer , 2017, Oncogenesis.

[17]  M. Petersen,et al.  Prevalence and patient characteristics of Mayer-Rokitansky-Küster-Hauser syndrome: a nationwide registry-based study. , 2016, Human reproduction.

[18]  K. Helin,et al.  Role of the Polycomb Repressive Complex 2 (PRC2) in Transcriptional Regulation and Cancer. , 2016, Cold Spring Harbor perspectives in medicine.

[19]  D. Matei,et al.  EZH2 inhibition promotes epithelial-to-mesenchymal transition in ovarian cancer cells , 2016, Oncotarget.

[20]  Benjamin E. L. Lauffer,et al.  Untangling the brain's neuroinflammatory and neurodegenerative transcriptional responses , 2016, Nature Communications.

[21]  D. Wallwiener,et al.  Typical and Atypical Associated Findings in a Group of 346 Patients with Mayer-Rokitansky-Kuester-Hauser Syndrome. , 2015, Journal of pediatric and adolescent gynecology.

[22]  C. Zhuang,et al.  SLITRK3 expression correlation to gastrointestinal stromal tumor risk rating and prognosis. , 2015, World journal of gastroenterology.

[23]  S. Brucker,et al.  Variations in RBM8A and TBX6 are associated with disorders of the müllerian ducts. , 2015, Fertility and sterility.

[24]  S. Ceccarelli,et al.  Autologous in vitro cultured vaginal tissue for vaginoplasty in women with Mayer-Rokitansky-Küster-Hauser syndrome: anatomic and functional results. , 2015, Journal of minimally invasive gynecology.

[25]  W. Huber,et al.  Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.

[26]  Qinglei Li Transforming growth factor β signaling in uterine development and function , 2014, Journal of Animal Science and Biotechnology.

[27]  S. Ceccarelli,et al.  Characterization of Human Vaginal Mucosa Cells for Autologous In Vitro Cultured Vaginal Tissue Transplantation in Patients with MRKH Syndrome , 2014, BioMed research international.

[28]  Rachel D. Mullen,et al.  Molecular Genetics of Müllerian Duct Formation, Regression and Differentiation , 2014, Sexual Development.

[29]  M. Petersen,et al.  Familial occurrence of Mayer–Rokitansky–Küster–Hauser syndrome: A case report and review of the literature , 2014, American journal of medical genetics. Part A.

[30]  S. Ceccarelli,et al.  Gene Expression Profile of Patients with Mayer-Rokitansky-Küster-Hauser Syndrome: New Insights into the Potential Role of Developmental Pathways , 2014, PloS one.

[31]  Jeffrey L. Wrana,et al.  Signal integration in TGF-β, WNT, and Hippo pathways , 2013, F1000prime reports.

[32]  D. Wallwiener,et al.  Uterine rudiments in patients with Mayer-Rokitansky-Küster-Hauser syndrome consist of typical uterine tissue types with predominantly basalis-like endometrium. , 2013, Fertility and sterility.

[33]  D. Blesa,et al.  The genomics of the human endometrium. , 2012, Biochimica et biophysica acta.

[34]  S. Brucker,et al.  Frame shift mutation of LHX1 is associated with Mayer-Rokitansky-Kuster-Hauser (MRKH) syndrome. , 2012, Human reproduction.

[35]  M. Beckmann,et al.  Malformations in a cohort of 284 women with Mayer-Rokitansky-Küster-Hauser syndrome (MRKH) , 2012, Reproductive Biology and Endocrinology.

[36]  E. Wagenmakers,et al.  A default Bayesian hypothesis test for correlations and partial correlations , 2012, Psychonomic bulletin & review.

[37]  Andrew E. Jaffe,et al.  Bioinformatics Applications Note Gene Expression the Sva Package for Removing Batch Effects and Other Unwanted Variation in High-throughput Experiments , 2022 .

[38]  C. Walker Epigenomic reprogramming of the developing reproductive tract and disease susceptibility in adulthood. , 2011, Birth defects research. Part A, Clinical and molecular teratology.

[39]  P. Philibert,et al.  Molecular analysis of WNT4 gene in four adolescent girls with mullerian duct abnormality and hyperandrogenism (atypical Mayer-Rokitansky-Küster-Hauser syndrome). , 2011, Fertility and sterility.

[40]  D. Wallwiener,et al.  A combination of transcriptome and methylation analyses reveals embryologically-relevant candidate genes in MRKH patients , 2011, Orphanet journal of rare diseases.

[41]  Tomas W. Fitzgerald,et al.  High incidence of recurrent copy number variants in patients with isolated and syndromic Müllerian aplasia , 2011, Journal of Medical Genetics.

[42]  B. Tarlatzis,et al.  HOX A10 and HOX A11 mutation scan in congenital malformations of the female genital tract. , 2010, Reproductive biomedicine online.

[43]  M. Hung,et al.  Xenoestrogen-induced regulation of EZH2 and histone methylation via estrogen receptor signaling to PI3K/AKT. , 2010, Molecular endocrinology.

[44]  Gonçalo R. Abecasis,et al.  The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..

[45]  Graziano Pesole,et al.  Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes , 2009, Nucleic Acids Res..

[46]  E. Darai,et al.  Mutational analysis of the WNT gene family in women with Mayer-Rokitansky-Kuster-Hauser syndrome. , 2009, Fertility and sterility.

[47]  Samy Lamouille,et al.  TGF-β-induced epithelial to mesenchymal transition , 2009, Cell Research.

[48]  P. Philibert,et al.  Mayer–Rokitansky–Kuster–Hauser syndrome: Recent clinical and genetic findings , 2009, Gynecological endocrinology : the official journal of the International Society of Gynecological Endocrinology.

[49]  Steve Horvath,et al.  WGCNA: an R package for weighted correlation network analysis , 2008, BMC Bioinformatics.

[50]  D. Wallwiener,et al.  Neovagina creation in vaginal agenesis: development of a new laparoscopic Vecchietti-based procedure and optimized instruments in a prospective comparative interventional study in 101 patients. , 2008, Fertility and sterility.

[51]  Bin Zhang,et al.  Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R , 2008, Bioinform..

[52]  R. Rouzier,et al.  Identification and functional analysis of a new WNT4 gene mutation among 28 adolescent girls with primary amenorrhea and müllerian duct abnormalities: a French collaborative study. , 2008, The Journal of clinical endocrinology and metabolism.

[53]  S. Shmelkov,et al.  A novel family of slitrk genes is expressed on hematopoietic stem cells and leukemias , 2007, Leukemia.

[54]  R. Robker,et al.  Null mutation in transforming growth factor beta1 disrupts ovarian function and causes oocyte incompetence and early embryo arrest. , 2006, Endocrinology.

[55]  S. Horvath,et al.  A General Framework for Weighted Gene Co-Expression Network Analysis , 2005, Statistical applications in genetics and molecular biology.

[56]  E. Schoenle,et al.  A WNT4 mutation associated with Müllerian-duct regression and virilization in a 46,XX woman. , 2004, The New England journal of medicine.

[57]  P. Shannon,et al.  Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.

[58]  K. Mikoshiba,et al.  Human SLITRK family genes: genomic organization and expression profiling in normal brain and brain tumor tissue. , 2003, Gene.

[59]  R. Hoover,et al.  Continued Follow‐up of Pregnancy Outcomes in Diethylstilbestrol‐exposed Offspring , 2000, Obstetrics and gynecology.

[60]  P. Igarashi,et al.  In utero diethylstilbestrol (DES) exposure alters Hox gene expression in the developing mullerian system , 2000, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[61]  R. Wilcox Introduction to Robust Estimation and Hypothesis Testing , 1997 .

[62]  Thomas R. Gingeras,et al.  STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..

[63]  G. Scarano,et al.  WNT4 deficiency--a clinical phenotype distinct from the classic Mayer-Rokitansky-Kuster-Hauser syndrome: a case report. , 2007, Human reproduction.

[64]  E. Ziegel Introduction to Robust Estimation and Hypothesis Testing (2nd ed.) , 2005 .

[65]  K. Ludwig The Mayer-Rokitansky-Küster syndrome. An analysis of its morphology and embryology. Part I: Morphology. , 1998, Archives of gynecology and obstetrics.

[66]  K. Ludwig The Mayer-Rokitansky-Küster syndrome. An analysis of its morphology and embryology. Part II: Embryology. , 1998, Archives of gynecology and obstetrics.

[67]  K. Ludwig The Mayer-Rokitansky-Küster syndrome , 1998, Archives of Gynecology and Obstetrics.

[68]  K. Ludwig The Mayer-Rokitansky-Küster syndrome , 1998, Archives of Gynecology and Obstetrics.