Autoinduction of 2,4-Diacetylphloroglucinol Biosynthesis in the Biocontrol Agent Pseudomonas fluorescensCHA0 and Repression by the Bacterial Metabolites Salicylate and Pyoluteorin

ABSTRACT The antimicrobial metabolite 2,4-diacetylphloroglucinol (2,4-DAPG) contributes to the capacity of Pseudomonas fluorescensstrain CHA0 to control plant diseases caused by soilborne pathogens. A 2,4-DAPG-negative Tn5 insertion mutant of strain CHA0 was isolated, and the nucleotide sequence of the 4-kb genomic DNA region adjacent to the Tn5 insertion site was determined. Four open reading frames were identified, two of which were homologous tophlA, the first gene of the 2,4-DAPG biosynthetic operon, and to the phlF gene encoding a pathway-specific transcriptional repressor. The Tn5 insertion was located in an open reading frame, tentatively named phlH, which is not related to known phl genes. In wild-type CHA0, 2,4-DAPG production paralleled expression of a phlA′-′lacZtranslational fusion, reaching a maximum in the late exponential growth phase. Thereafter, the compound appeared to be degraded to monoacetylphloroglucinol by the bacterium. 2,4-DAPG was identified as the active compound in extracts from culture supernatants of strain CHA0 specifically inducing phlA′-′lacZ expression about sixfold during exponential growth. Induction by exogenous 2,4-DAPG was most conspicuous in a phlA mutant, which was unable to produce 2,4-DAPG. In a phlF mutant, 2,4-DAPG production was enhanced severalfold and phlA′-′lacZ was expressed at a level corresponding to that in the wild type with 2,4-DAPG added. ThephlF mutant was insensitive to 2,4-DAPG addition. A transcriptional phlA-lacZ fusion was used to demonstrate that the repressor PhlF acts at the level of transcription. Expression of phlA′-′lacZ and 2,4-DAPG synthesis in strain CHA0 was strongly repressed by the bacterial extracellular metabolites salicylate and pyoluteorin as well as by fusaric acid, a toxin produced by the pythopathogenic fungus Fusarium. In thephlF mutant, these compounds did not affectphlA′-′lacZ expression and 2,4-DAPG production. PhlF-mediated induction by 2,4-DAPG and repression by salicylate ofphlA′-′lacZ expression was confirmed by usingEscherichia coli as a heterologous host. In conclusion, our results show that autoinduction of 2,4-DAPG biosynthesis can be countered by certain bacterial (and fungal) metabolites. This mechanism, which depends on phlF function, may helpP. fluorescens to produce homeostatically balanced amounts of extracellular metabolites.

[1]  M. Farinha,et al.  High efficiency electroporation of Pseudomonas aeruginosa using frozen cell suspensions. , 1990, FEMS microbiology letters.

[2]  L. N. Ornston,et al.  The Conversion of Catechol and Protocatechuate to β-Ketoadipate by Pseudomonas putida I. BIOCHEMISTRY , 1966 .

[3]  D. Haas,et al.  Oxygen-Sensing Reporter Strain of Pseudomonas fluorescens for Monitoring the Distribution of Low-Oxygen Habitats in Soil , 1999, Applied and Environmental Microbiology.

[4]  C. Keel,et al.  Tn5-directed cloning of pqq genes from Pseudomonas fluorescens CHA0: mutational inactivation of the genes results in overproduction of the antibiotic pyoluteorin , 1995, Applied and environmental microbiology.

[5]  H. Krisch,et al.  In vitro insertional mutagenesis with a selectable DNA fragment. , 1984, Gene.

[6]  D. Weller,et al.  Effect of Population Density of Pseudomonas fluorescens on Production of 2,4-Diacetylphloroglucinol in the Rhizosphere of Wheat. , 1999, Phytopathology.

[7]  B. Matthews,et al.  The helix-turn-helix DNA binding motif. , 1989, The Journal of biological chemistry.

[8]  F. O'Gara,et al.  Isolation of 2,4-Diacetylphloroglucinol from a Fluorescent Pseudomonad and Investigation of Physiological Parameters Influencing Its Production , 1992, Applied and environmental microbiology.

[9]  D. Haas,et al.  RNA processing modulates the expression of the arcDABC operon in Pseudomonas aeruginosa. , 1992, Journal of molecular biology.

[10]  L. Thomashow,et al.  Current Concepts in the Use of Introduced Bacteria for Biological Disease Control: Mechanisms and Antifungal Metabolites , 1996 .

[11]  B. Duffy,et al.  Environmental Factors Modulating Antibiotic and Siderophore Biosynthesis by Pseudomonas fluorescensBiocontrol Strains , 1999, Applied and Environmental Microbiology.

[12]  F. O'Gara,et al.  Exploitation of gene(s) involved in 2,4-diacetylphloroglucinol biosynthesis to confer a new biocontrol capability to a Pseudomonas strain , 1992, Applied and Environmental Microbiology.

[13]  F. O'Gara,et al.  Molecular Ecology of Rhizosphere Microorganisms , 1994 .

[14]  V. Brown,et al.  Multitrophic Interactions in Terrestrial Systems , 1997 .

[15]  M. Lambrecht,et al.  Auxins Upregulate Expression of the Indole-3-Pyruvate Decarboxylase Gene in Azospirillum brasilense , 1999, Journal of bacteriology.

[16]  L. Thomashow,et al.  Frequency of Antibiotic-Producing Pseudomonas spp. in Natural Environments , 1997, Applied and environmental microbiology.

[17]  C. Reimmann,et al.  Integration of replication-defective R68.45-like plasmids into the Pseudomonas aeruginosa chromosome. , 1988, Journal of general microbiology.

[18]  F. O'Gara,et al.  Liquid chromatographic assay of microbially derived phloroglucinol antibiotics for establishing the biosynthetic route to production, and the factors affecting their regulation , 1993 .

[19]  C. Reimmann,et al.  Dihydroaeruginoic acid synthetase and pyochelin synthetase, products of the pchEF genes, are induced by extracellular pyochelin in Pseudomonas aeruginosa. , 1998, Microbiology.

[20]  L. Thomashow,et al.  Identification and Characterization of a Gene Cluster for Synthesis of the Polyketide Antibiotic 2,4-Diacetylphloroglucinol from Pseudomonas fluorescens Q2-87 , 1999, Journal of bacteriology.

[21]  C. Keel,et al.  Influence of enhanced antibiotic production in pseudomonas fluorescens strain cha0 on its disease suppressive capacity , 1992 .

[22]  B. Bachmann,et al.  Pedigrees of some mutant strains of Escherichia coli K-12. , 1972, Bacteriological reviews.

[23]  S. Heeb,et al.  Salicylic Acid Biosynthetic Genes Expressed in Pseudomonas fluorescens Strain P3 Improve the Induction of Systemic Resistance in Tobacco Against Tobacco Necrosis Virus. , 1998, Phytopathology.

[24]  L. N. Ornston,et al.  The conversion of catechol and protocatechuate to beta-ketoadipate by Pseudomonas putida. , 1966, The Journal of biological chemistry.

[25]  G. Pessi,et al.  Global GacA-steered control of cyanide and exoprotease production in Pseudomonas fluorescens involves specific ribosome binding sites. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[26]  C. Whistler,et al.  The Two-Component Regulators GacS and GacA Influence Accumulation of the Stationary-Phase Sigma Factor ςS and the Stress Response in Pseudomonas fluorescensPf-5 , 1998, Journal of bacteriology.

[27]  C. Keel,et al.  Suppression of root diseases by Pseudomonas fluorescens CHA0 - importance of the bacterial seconday metabolite 2,4-diacetylphloroglucinol , 1992 .

[28]  N. Gutterson Microbial Fungicides: Recent Approaches to Elucidating Mechanisms , 1990 .

[29]  F. O'Gara,et al.  Metabolites of Pseudomonas involved in the biocontrol of plant disease , 1994 .

[30]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[31]  C. Keel,et al.  Amplification of the housekeeping sigma factor in Pseudomonas fluorescens CHA0 enhances antibiotic production and improves biocontrol abilities , 1995, Journal of bacteriology.

[32]  E. Greenberg,et al.  Self perception in bacteria: quorum sensing with acylated homoserine lactones. , 1998, Current opinion in microbiology.

[33]  B. Holloway,et al.  A mutant sex factor of Pseudomonas aeruginosa. , 1972, Genetical research.

[34]  D. Roop,et al.  Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. , 1995, Gene.

[35]  Vieira Jeffrey,et al.  New pUC-derived cloning vectors with different selectable markers and DNA replication origins. , 1991 .

[36]  A. Sarniguet,et al.  The sigma factor sigma s affects antibiotic production and biological control activity of Pseudomonas fluorescens Pf-5. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[37]  F. O'Gara,et al.  Small, stable shuttle vectors based on the minimal pVS1 replicon for use in gram-negative, plant-associated bacteria. , 2000, Molecular plant-microbe interactions : MPMI.

[38]  J. Heesemann,et al.  The Yersiniabactin Biosynthetic Gene Cluster of Yersinia enterocolitica: Organization and Siderophore-Dependent Regulation , 1998, Journal of bacteriology.

[39]  C. Yanisch-Perron,et al.  Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. , 1985, Gene.

[40]  J. Loper,et al.  A global regulator of secondary metabolite production in Pseudomonas fluorescens Pf-5 , 1995, Journal of bacteriology.

[41]  P. Kaiser Molecular ecology of rhizosphere microorganisms , 1995 .

[42]  B. Duffy,et al.  Zinc Improves Biocontrol of Fusarium Crown and Root Rot of Tomato by Pseudomonas fluorescens and Represses the Production of Pathogen Metabolites Inhibitory to Bacterial Antibiotic Biosynthesis. , 1997, Phytopathology.

[43]  D. Haas,et al.  Pseudomonads as antagonists of plant pathogens in the rhizosphere: role of the antibiotic 2,4-diacetylphloroglucinol in the suppression of black root rot of tobacco. , 1990 .

[44]  G. Roberts,et al.  An improved Tn7-based system for the single-copy insertion of cloned genes into chromosomes of gram-negative bacteria. , 1991, Gene.

[45]  H. Krisch,et al.  Interposon mutagenesis of soil and water bacteria: a family of DNA fragments designed for in vitro insertional mutagenesis of gram-negative bacteria. , 1987, Gene.

[46]  L. Thomashow,et al.  Quantification of 2,4-Diacetylphloroglucinol Produced by Fluorescent Pseudomonas spp. In Vitro and in the Rhizosphere of Wheat , 1997, Applied and environmental microbiology.

[47]  D. Haas,et al.  Conjugative transfer of plasmid RP1 to soil isolates of Pseudomonas fluorescens is facilitated by certain large RP1 deletions , 1988 .

[48]  F. O'Gara,et al.  Ecological interaction of a biocontrol Pseudomonas fluorescens strain producing 2,4-diacetylphloroglucinol with the soft rot potato pathogen Erwinia carotovora subsp. atroseptica , 1997 .

[49]  G. Del Sal,et al.  A one-tube plasmid DNA mini-preparation suitable for sequencing. , 1988, Nucleic acids research.

[50]  D. Haas,et al.  Extracellular protease and phospholipase C are controlled by the global regulatory gene gacA in the biocontrol strain Pseudomonas fluorescens CHA0. , 1994, FEMS microbiology letters.

[51]  Francoise M. Blachere,et al.  Interpopulation signaling via N-acyl-homoserine lactones among bacteria in the wheat rhizosphere , 1998 .

[52]  M. Matsufuji,et al.  High Production of Pyoluteorin and 2, 4-Diacetylphloroglucinol by Pseudomonas fluorescens S272 Grown on Ethanol as a Sole Carbon Source , 1998 .

[53]  J. Vieira,et al.  New pUC-derived cloning vectors with different selectable markers and DNA replication origins. , 1991, Gene.

[54]  D. Weller,et al.  Natural plant protection by 2,4-diacetylphloroglucinol-producing Pseudomonas spp. in take-all decline soils , 1998 .

[55]  C. Keel,et al.  Global control in Pseudomonas fluorescens mediating antibiotic synthesis and suppression of black root rot of tobacco. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[56]  F. O'Gara,et al.  Role of 2,4-Diacetylphloroglucinol in the Interactions of the Biocontrol Pseudomonad Strain F113 with the Potato Cyst Nematode Globodera rostochiensis , 1997, Applied and environmental microbiology.

[57]  C. Keel,et al.  Conservation of the 2,4-diacetylphloroglucinol biosynthesis locus among fluorescent Pseudomonas strains from diverse geographic locations , 1996, Applied and environmental microbiology.

[58]  C. Keel,et al.  Enhanced production of indole-3-acetic acid by a genetically modified strain of Pseudomonas fluorescens CHA0 affects root growth of cucumber, but does not improve protection of the plant against Pythium root rot , 1999 .

[59]  C. Keel,et al.  Characterization of the hcnABC Gene Cluster Encoding Hydrogen Cyanide Synthase and Anaerobic Regulation by ANR in the Strictly Aerobic Biocontrol Agent Pseudomonas fluorescens CHA0 , 1998, Journal of bacteriology.