Transcriptional responses of Acropora hyacinthus embryo under the benzo(a)pyrene stress by deep sequencing.

[1]  Y. Loya,et al.  Laboratory experiments on the effects of crude oil on the Red Sea coral Stylophora pistillata , 1979 .

[2]  N. Motoyama Glutathione S-transferases: their role in the metabolism of organophosphorus insecticides. , 1980 .

[3]  J. Claverie,et al.  The significance of digital gene expression profiles. , 1997, Genome research.

[4]  W. Pratt,et al.  Steroid receptor interactions with heat shock protein and immunophilin chaperones. , 1997, Endocrine reviews.

[5]  J. Smeitink,et al.  cDNA sequence and chromosomal localization of the remaining three human nuclear encoded iron sulphur protein (IP) subunits of complex I: the human IP fraction is completed. , 1998, Biochemical and biophysical research communications.

[6]  J. Murphy,et al.  Utility of SSRs for Determining Genetic Similarities an Relationships in Maize Using an Agarose Gel System , 1998 .

[7]  O. Hoegh‐Guldberg Climate change, coral bleaching and the future of the world's coral reefs , 1999 .

[8]  M. Feder,et al.  Heat-shock proteins, molecular chaperones, and the stress response: evolutionary and ecological physiology. , 1999, Annual review of physiology.

[9]  B. Persson,et al.  Common structural features of mapeg—a widespread superfamily of membrane associated proteins with highly divergent functions in eicosanoid and glutathione metabolism , 2008, Protein science : a publication of the Protein Society.

[10]  J. Smeitink,et al.  Human mitochondrial complex I in health and disease. , 1999, American journal of human genetics.

[11]  Y. Benjamini,et al.  THE CONTROL OF THE FALSE DISCOVERY RATE IN MULTIPLE TESTING UNDER DEPENDENCY , 2001 .

[12]  T. Brown,et al.  HyBeacon probes: a new tool for DNA sequence detection and allele discrimination. , 2001, Molecular and cellular probes.

[13]  J. Moult,et al.  SNPs, protein structure, and disease , 2001, Human mutation.

[14]  J. Smeitink,et al.  The oxidative phosphorylation (OXPHOS) system: nuclear genes and human genetic diseases , 2001, BioEssays : news and reviews in molecular, cellular and developmental biology.

[15]  P. Schulte,et al.  Heat shock protein genes and their functional significance in fish. , 2002, Gene.

[16]  R. Varshney,et al.  Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.) , 2003, Theoretical and Applied Genetics.

[17]  R. Grosberg,et al.  Climate Change, Human Impacts, and the Resilience of Coral Reefs , 2003, Science.

[18]  Different Applications of Polymerases With and Without Proofreading Activity in Single-Nucleotide Polymorphism Analysis , 2003, Laboratory Investigation.

[19]  Darren A. Natale,et al.  The COG database: an updated version includes eukaryotes , 2003, BMC Bioinformatics.

[20]  P. Douben PAHs : an ecotoxicological perspective , 2003 .

[21]  John Quackenbush,et al.  TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets , 2003, Bioinform..

[22]  A. Knap,et al.  The effects of oil and oil dispersants on the skeletal growth of the hermatypic coral Diploria strigosa , 1984, Coral Reefs.

[23]  J. Smeitink,et al.  Differences in assembly or stability of complex I and other mitochondrial OXPHOS complexes in inherited complex I deficiency. , 2004, Human molecular genetics.

[24]  B Marshall,et al.  Gene Ontology Consortium: The Gene Ontology (GO) database and informatics resource , 2004, Nucleic Acids Res..

[25]  Juan Miguel García-Gómez,et al.  BIOINFORMATICS APPLICATIONS NOTE Sequence analysis Manipulation of FASTQ data with Galaxy , 2005 .

[26]  A. Enayati,et al.  Insect glutathione transferases and insecticide resistance , 2005, Insect molecular biology.

[27]  Lin Fang,et al.  WEGO: a web tool for plotting GO annotations , 2006, Nucleic Acids Res..

[28]  C. Ravilious,et al.  In the front line. Shoreline protection and other ecosystem services from mangroves and coral reefs. UNEP-WCMC Biodiversity Series 24 , 2006 .

[29]  K. Hylland Polycyclic Aromatic Hydrocarbon (PAH) Ecotoxicology in Marine Ecosystems , 2006, Journal of toxicology and environmental health. Part A.

[30]  E. Septiningsih,et al.  A marker-assisted backcross approach for developing submergence-tolerant rice cultivars , 2007, Theoretical and Applied Genetics.

[31]  R. Ramos,et al.  Induction of mixed-function oxygenase system and antioxidant enzymes in the coral Montastraea faveolata on acute exposure to benzo(a)pyrene. , 2007, Comparative biochemistry and physiology. Toxicology & pharmacology : CBP.

[32]  J. Haapkylä,et al.  Oil pollution on coral reefs : A review of the state of knowledge and management needs , 2007 .

[33]  H. Padh,et al.  Advances in molecular marker techniques and their applications in plant sciences , 2008, Plant Cell Reports.

[34]  M. Marra,et al.  Applications of next-generation sequencing technologies in functional genomics. , 2008, Genomics.

[35]  Liu Gao-lin Research advance on the characteristics and application of CYP450 metabolic enzymes , 2008 .

[36]  Z. Bao,et al.  Microsatellite markers derived from bay scallop Argopecten irradians expressed sequence tags , 2005, Fisheries Science.

[37]  F. McCarthy,et al.  Understanding animal viruses using the Gene Ontology. , 2009, Trends in microbiology.

[38]  Cole Trapnell,et al.  Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. , 2010, Nature biotechnology.

[39]  M. DePristo,et al.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.

[40]  Chunyang Liao,et al.  Molecular phylogenies and evolutionary behavior of AhR (aryl hydrocarbon receptor) pathway genes in aquatic animals: implications for the toxicology mechanism of some persistent organic pollutants (POPs). , 2010, Chemosphere.

[41]  M. Rai,et al.  Microsatellite markers: an overview of the recent progress in plants , 2011, Euphytica.

[42]  N. Friedman,et al.  Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data , 2011, Nature Biotechnology.

[43]  Hongxia Wang,et al.  Mining of EST-SSR markers in clam Meretrix meretrix larvae from 454 shotgun transcriptome. , 2011, Genes & genetic systems.

[44]  Colin N. Dewey,et al.  RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome , 2011, BMC Bioinformatics.

[45]  Jianmin Zhao,et al.  Expression profiles of seven glutathione S-transferase (GST) genes from Venerupis philippinarum exposed to heavy metals and benzo[a]pyrene. , 2012, Comparative biochemistry and physiology. Toxicology & pharmacology : CBP.

[46]  H. Lehrach,et al.  RNA-Seq provides new insights in the transcriptome responses induced by the carcinogen benzo[a]pyrene. , 2012, Toxicological sciences : an official journal of the Society of Toxicology.

[47]  Danwei Huang Threatened Reef Corals of the World , 2012, PloS one.

[48]  S. Donner,et al.  Historical Temperature Variability Affects Coral Response to Heat Stress , 2012, PloS one.

[49]  W. Lu,et al.  Transcriptome Sequencing and Characterization for the Sea Cucumber Apostichopus japonicus (Selenka, 1867) , 2012, PloS one.

[50]  P. Bénit,et al.  Mitochondrial complex I deficiency of nuclear origin I. Structural genes. , 2012, Molecular genetics and metabolism.

[51]  B. Faircloth,et al.  Primer3—new capabilities and interfaces , 2012, Nucleic acids research.

[52]  Shuangmei Tian,et al.  An investigation of endocrine disrupting effects and toxic mechanisms modulated by benzo[a]pyrene in female scallop Chlamys farreri. , 2013, Aquatic toxicology.

[53]  T. Oliver,et al.  Genomic basis for coral resilience to climate change , 2013, Proceedings of the National Academy of Sciences.

[54]  S. Yum,et al.  Transcript response of soft coral (Scleronephthya gracillimum) on exposure to polycyclic aromatic hydrocarbons , 2013, Environmental Science and Pollution Research.

[55]  Jianmin Zhao,et al.  Proteomic and metabolomic analysis reveal gender-specific responses of mussel Mytilus galloprovincialis to 2,2',4,4'-tetrabromodiphenyl ether (BDE 47). , 2013, Aquatic toxicology.

[56]  Fung-Chi Ko,et al.  Comparative study of polycyclic aromatic hydrocarbons in coral tissues and the ambient sediments from Kenting National Park, Taiwan. , 2014, Environmental pollution.

[57]  N. Chandel,et al.  ROS Function in Redox Signaling and Oxidative Stress , 2014, Current Biology.

[58]  W. Zhou,et al.  Transcriptome de novo assembly sequencing and analysis of the toxic dinoflagellate Alexandrium catenella using the Illumina platform. , 2014, Gene.

[59]  Jiang Run-la Research advance in toxic effects of PAHs on aquatic animals , 2014 .

[60]  R. Kream,et al.  Comparing Bioinformatic Gene Expression Profiling Methods: Microarray and RNA-Seq , 2014, Medical science monitor basic research.

[61]  Tong Liu,et al.  Deep sequencing-based transcriptome profiling analysis of Chlamys farreri exposed to benzo[a]pyrene. , 2014, Gene.

[62]  Steven L Salzberg,et al.  HISAT: a fast spliced aligner with low memory requirements , 2015, Nature Methods.

[63]  L. Pan,et al.  Toxic effects upon exposure to benzo[a]pyrene in juvenile white shrimp Litopenaeus vannamei. , 2015, Environmental toxicology and pharmacology.

[64]  Alan J Mearns,et al.  Effects of Pollution on Marine Organisms , 1999, Water environment research : a research publication of the Water Environment Federation.

[65]  D. Hayward,et al.  Rapid acclimation of juvenile corals to CO2‐mediated acidification by upregulation of heat shock protein and Bcl‐2 genes , 2015, Molecular ecology.

[66]  H. Miyoshi,et al.  Reduction of Synthetic Ubiquinone QT Catalyzed by Bovine Mitochondrial Complex I Is Decoupled from Proton Translocation. , 2016, Biochemistry.

[67]  G. Degliesposti,et al.  Atomic structure of the entire mammalian mitochondrial complex I , 2016, Nature.

[68]  Shashi Kumar,et al.  Health Risk Assessment of Polycyclic Aromatic Hydrocarbons : A Review , 2016 .

[69]  Manju K. Menon,et al.  The Tactics of Persuasion: Environmental negotiations over a corporate coal project in coastal India , 2016 .

[70]  Hailong Zhou,et al.  Transcriptomic responses of Perna viridis embryo to Benzo(a)pyrene exposure elucidated by RNA sequencing. , 2016, Chemosphere.

[71]  H. Abdel‐Shafy,et al.  A review on polycyclic aromatic hydrocarbons: Source, environmental impact, effect on human health and remediation , 2016 .

[72]  R. Dietz,et al.  Immunotoxic effects of environmental pollutants in marine mammals. , 2016, Environment international.

[73]  S. Palumbi,et al.  Early Transcriptional Responses during Heat Stress in the Coral Acropora hyacinthus , 2017, The Biological Bulletin.

[74]  T. Chon,et al.  The Monitoring and Assessment of Aquatic Toxicology , 2017, BioMed research international.

[75]  M. Hoogenboom,et al.  Effects of coal contamination on early life history processes of a reef-building coral, Acropora tenuis. , 2017, Marine pollution bulletin.

[76]  Zhixin Wu,et al.  Transcriptomic analysis of liver from grass carp (Ctenopharyngodon idellus) exposed to high environmental ammonia reveals the activation of antioxidant and apoptosis pathways , 2017, Fish & shellfish immunology.

[77]  N. Turner,et al.  Petroleum hydrocarbon toxicity to corals: A review. , 2017, Marine pollution bulletin.

[78]  Hailong Zhou,et al.  Differential gene responses in the embryo of the green mussel Perna viridis exposed to dichlorodiphenyltrichloroethane (DDT). , 2017, Toxicology research.

[79]  S. Palumbi,et al.  Tidal heat pulses on a reef trigger a fine-tuned transcriptional response in corals to maintain homeostasis , 2017, Science Advances.

[80]  A. Knap,et al.  Acute and subacute toxicity of the polycyclic aromatic hydrocarbon 1‐methylnaphthalene to the shallow‐water coral Porites divaricata: Application of a novel exposure protocol , 2017, Environmental toxicology and chemistry.

[81]  Dongmei Han,et al.  Persistent organic pollutants in China's surface water systems. , 2017, The Science of the total environment.

[82]  Hailong Zhou,et al.  An integrated metabolomic and proteomic study of toxic effects of Benzo[a]pyrene on gills of the pearl oyster Pinctada martensii. , 2018, Ecotoxicology and environmental safety.

[83]  Hailong Zhou,et al.  Occurrence and distribution of Polycyclic aromatic hydrocarbons (PAHs) in seawater, sediments and corals from Hainan Island, China. , 2018, Ecotoxicology and environmental safety.

[84]  M. Aliabadian,et al.  First report of bioaccumulation and bioconcentration of aliphatic hydrocarbons (AHs) and persistent organic pollutants (PAHs, PCBs and PCNs) and their effects on alcyonacea and scleractinian corals and their endosymbiotic algae from the Persian Gulf, Iran: Inter and intra-species differences. , 2018, The Science of the total environment.