Regulation of histone gene transcription in yeast

[1]  G. Almouzni,et al.  Placing the HIRA histone chaperone complex in the chromatin landscape. , 2013, Cell reports.

[2]  J. Greenblatt,et al.  The Carboxyl Terminus of Rtt109 Functions in Chaperone Control of Histone Acetylation , 2013, Eukaryotic Cell.

[3]  J. Mesirov,et al.  Integrated Genomic Analysis of the 8q24 Amplification in Endometrial Cancers Identifies ATAD2 as Essential to MYC-Dependent Cancers , 2013, PloS one.

[4]  M. Trickey,et al.  Anaphase-promoting Complex/Cyclosome-mediated Proteolysis of Ams2 in the G1 Phase Ensures the Coupling of Histone Gene Expression to DNA Replication in Fission Yeast* , 2012, The Journal of Biological Chemistry.

[5]  Pierre Validire,et al.  A Comparative and Integrative Approach Identifies ATPase Family, AAA Domain Containing 2 as a Likely Driver of Cell Proliferation in Lung Adenocarcinoma , 2012, Clinical Cancer Research.

[6]  J. Rine,et al.  Direct Interplay among Histones, Histone Chaperones, and a Chromatin Boundary Protein in the Control of Histone Gene Expression , 2012, Molecular and Cellular Biology.

[7]  K. Mahajan,et al.  H2B Tyr37 phosphorylation suppresses expression of replication-dependent core histone genes , 2012, Nature Structural &Molecular Biology.

[8]  D. Clark,et al.  Regulation of Histone Gene Expression in Budding Yeast , 2012, Genetics.

[9]  P. Billon,et al.  Precise deposition of histone H2A.Z in chromatin for genome expression and maintenance. , 2012, Biochimica et biophysica acta.

[10]  A. Gerber,et al.  La-motif-dependent mRNA association with Slf1 promotes copper detoxification in yeast. , 2012, RNA.

[11]  Zhiguo Zhang,et al.  Histone Chaperone Rtt106 Promotes Nucleosome Formation Using (H3-H4)2 Tetramers* , 2012, The Journal of Biological Chemistry.

[12]  D. Figeys,et al.  Restriction of histone gene transcription to S phase by phosphorylation of a chromatin boundary protein. , 2011, Genes & development.

[13]  J. Fillingham,et al.  The Replication-independent Histone H3-H4 Chaperones HIR, ASF1, and RTT106 Co-operate to Maintain Promoter Fidelity , 2011, The Journal of Biological Chemistry.

[14]  T. James,et al.  The PolyA tail length of yeast histone mRNAs varies during the cell cycle and is influenced by Sen1p and Rrp6p , 2011, Nucleic acids research.

[15]  J. Rine,et al.  Direct regulation of nucleosome density by the conserved AAA-ATPase Yta7 , 2011, Proceedings of the National Academy of Sciences.

[16]  T. Lenstra,et al.  A Barcode Screen for Epigenetic Regulators Reveals a Role for the NuB4/HAT-B Histone Acetyltransferase Complex in Histone Turnover , 2011, PLoS genetics.

[17]  R. Marmorstein,et al.  Human CABIN1 Is a Functional Member of the Human HIRA/UBN1/ASF1a Histone H3.3 Chaperone Complex , 2011, Molecular and Cellular Biology.

[18]  Monica E. Ferreira,et al.  The Saccharomyces cerevisiae Histone Chaperone Rtt106 Mediates the Cell Cycle Recruitment of SWI/SNF and RSC to the HIR-Dependent Histone Genes , 2011, PloS one.

[19]  S. Moreno,et al.  Lsm1 promotes genomic stability by controlling histone mRNA decay , 2011, The EMBO journal.

[20]  Frederick S. Vizeacoumar,et al.  Systematic exploration of essential yeast gene function with temperature-sensitive mutants , 2011, Nature Biotechnology.

[21]  J. Greenblatt,et al.  Molecular Systems Biology 6; Article number 448; doi:10.1038/msb.2010.104 Citation: Molecular Systems Biology 6:448 , 2022 .

[22]  J. Ferralli,et al.  ATAD2B is a phylogenetically conserved nuclear protein expressed during neuronal differentiation and tumorigenesis , 2010, Development, growth & differentiation.

[23]  D. Clark,et al.  Spt10 and Swi4 Control the Timing of Histone H2A/H2B Gene Activation in Budding Yeast , 2010, Molecular and Cellular Biology.

[24]  F. Winston,et al.  Spt10 and Spt21 Are Required for Transcriptional Silencing in Saccharomyces cerevisiae , 2010, Eukaryotic Cell.

[25]  E. Brambilla,et al.  Functional characterization of ATAD2 as a new cancer/testis factor and a predictor of poor prognosis in breast and lung cancers , 2010, Oncogene.

[26]  J. Diffley,et al.  Checkpoint Dependent Inhibition of DNA Replication Initiation by Sld3 and Dbf4 Phosphorylation , 2010, Nature.

[27]  Andreas Mayer,et al.  Nucleocytoplasmic shuttling of the La motif-containing protein Sro9 might link its nuclear and cytoplasmic functions. , 2010, RNA.

[28]  Richard D Kolodner,et al.  An overview of Cdk1-controlled targets and processes , 2010, Cell Division.

[29]  T. Toda,et al.  Hsk1- and SCFPof3-Dependent Proteolysis of S. pombe Ams2 Ensures Histone Homeostasis and Centromere Function , 2010, Developmental cell.

[30]  J. Chin,et al.  A Method for Genetically Installing Site-Specific Acetylation in Recombinant Histones Defines the Effects of H3 K56 Acetylation , 2009, Molecular cell.

[31]  T. Hughes,et al.  Two-color cell array screen reveals interdependent roles for histone chaperones and a chromatin boundary regulator in histone gene repression. , 2009, Molecular cell.

[32]  Richard S. Rogers,et al.  A Noncanonical Bromodomain in the AAA ATPase Protein Yta7 Directs Chromosomal Positioning and Barrier Chromatin Activity , 2009, Molecular and Cellular Biology.

[33]  V. Corces,et al.  CTCF: Master Weaver of the Genome , 2009, Cell.

[34]  A. Gunjan,et al.  Histone levels are regulated by phosphorylation and ubiquitylation dependent proteolysis , 2009, Nature Cell Biology.

[35]  Michael Grunstein,et al.  Histone h3 lysine 56 acetylation is linked to the core transcriptional network in human embryonic stem cells. , 2009, Molecular cell.

[36]  L. Aravind,et al.  HPC2 and ubinuclein define a novel family of histone chaperones conserved throughout eukaryotes , 2009, Molecular bioSystems.

[37]  H. Ceulemans,et al.  Human UBN1 Is an Ortholog of Yeast Hpc2p and Has an Essential Role in the HIRA/ASF1a Chromatin-Remodeling Pathway in Senescent Cells , 2008, Molecular and Cellular Biology.

[38]  E. Wagner,et al.  Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail , 2008, Nature Reviews Genetics.

[39]  E. Paquet,et al.  The Rtt106 Histone Chaperone Is Functionally Linked to Transcription Elongation and Is Involved in the Regulation of Spurious Transcription from Cryptic Promoters in Yeast*♦ , 2008, Journal of Biological Chemistry.

[40]  Zhiguo Zhang,et al.  Acetylation of Histone H3 Lysine 56 Regulates Replication-Coupled Nucleosome Assembly , 2008, Cell.

[41]  J. Tyler,et al.  Acetylation in the globular core of histone H3 on lysine-56 promotes chromatin disassembly during transcriptional activation , 2008, Proceedings of the National Academy of Sciences.

[42]  A. Emili,et al.  Chaperone Control of the Activity and Specificity of the Histone H3 Acetyltransferase Rtt109 , 2008, Molecular and Cellular Biology.

[43]  Richard S. Rogers,et al.  Saccharomyces cerevisiae Yta7 Regulates Histone Gene Expression , 2008, Genetics.

[44]  E. Wagner,et al.  SLIP1, a Factor Required for Activation of Histone mRNA Translation by the Stem-Loop Binding Protein , 2007, Molecular and Cellular Biology.

[45]  Tore Samuelsson,et al.  Early evolution of histone mRNA 3' end processing. , 2007, RNA.

[46]  Ronald W. Davis,et al.  A high-resolution atlas of nucleosome occupancy in yeast , 2007, Nature Genetics.

[47]  U. Bond,et al.  Deletion of the nuclear exosome component RRP6 leads to continued accumulation of the histone mRNA HTB1 in S-phase of the cell cycle in Saccharomyces cerevisiae , 2007, Nucleic acids research.

[48]  S. Tharun,et al.  The decapping activator Lsm1p-7p-Pat1p complex has the intrinsic ability to distinguish between oligoadenylated and polyadenylated RNAs. , 2007, RNA.

[49]  L. Selth,et al.  Vps75, A New Yeast Member of the NAP Histone Chaperone Family* , 2007, Journal of Biological Chemistry.

[50]  Kohta Takahashi,et al.  Differential regulation of repeated histone genes during the fission yeast cell cycle , 2007, Nucleic acids research.

[51]  Grant W. Brown,et al.  Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map , 2007, Nature.

[52]  H. Fried.  Histone chaperones regulate histone exchange during transcription , 2007 .

[53]  Judith L Campbell,et al.  Contribution of Trf4/5 and the Nuclear Exosome to Genome Stability Through Regulation of Histone mRNA Levels in Saccharomyces cerevisiae , 2007, Genetics.

[54]  Robert Driscoll,et al.  Yeast Rtt109 Promotes Genome Stability by Acetylating Histone H3 on Lysine 56 , 2007, Science.

[55]  Junhong Han,et al.  Rtt109 Acetylates Histone H3 Lysine 56 and Functions in DNA Replication , 2007, Science.

[56]  K. Cooper,et al.  Rb, whi it's not just for metazoans anymore , 2006, Oncogene.

[57]  N. Krogan,et al.  GammaH2AX and its role in DNA double-strand break repair. , 2006, Biochemistry and cell biology = Biochimie et biologie cellulaire.

[58]  B. Garcia,et al.  Histone chaperone Asf1 is required for histone H3 lysine 56 acetylation, a modification associated with S phase in mitosis and meiosis. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[59]  A. Gunjan,et al.  The emergence of regulated histone proteolysis. , 2006, Current opinion in genetics & development.

[60]  Sean R. Collins,et al.  Global landscape of protein complexes in the yeast Saccharomyces cerevisiae , 2006, Nature.

[61]  D. Clark,et al.  The DNA-binding Domain of the Yeast Spt10p Activator Includes a Zinc Finger That Is Homologous to Foamy Virus Integrase* , 2006, Journal of Biological Chemistry.

[62]  T. Hughes,et al.  Mapping pathways and phenotypes by systematic gene overexpression. , 2006, Molecular cell.

[63]  S. Buratowski,et al.  Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts. , 2006, Molecular cell.

[64]  Kevin J. Wu,et al.  Replication-Independent Histone Deposition by the HIR Complex and Asf1 , 2005, Current Biology.

[65]  Michael P Washburn,et al.  The HIR corepressor complex binds to nucleosomes generating a distinct protein/DNA complex resistant to remodeling by SWI/SNF. , 2005, Genes & development.

[66]  Adam W. Martinez,et al.  Multiple Bromodomain Genes Are Involved in Restricting the Spread of Heterochromatic Silencing at the Saccharomyces cerevisiae HMR-tRNA Boundary , 2005, Genetics.

[67]  Zhiguo Zhang,et al.  Rtt106p is a histone chaperone involved in heterochromatin-mediated silencing. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[68]  David Hawke,et al.  A role for cell-cycle-regulated histone H3 lysine 56 acetylation in the DNA damage response , 2005, Nature.

[69]  M. Grunstein,et al.  Acetylation in Histone H3 Globular Domain Regulates Gene Expression in Yeast , 2005, Cell.

[70]  F. Winston,et al.  Evidence That Spt10 and Spt21 of Saccharomyces cerevisiae Play Distinct Roles in Vivo and Functionally Interact With MCB-Binding Factor, SCB-Binding Factor and Snf1 , 2005, Genetics.

[71]  Alan J. Tackett,et al.  Proteomic and genomic characterization of chromatin complexes at a boundary , 2005, The Journal of cell biology.

[72]  F. Prado,et al.  Partial Depletion of Histone H4 Increases Homologous Recombination-Mediated Genetic Instability , 2005, Molecular and Cellular Biology.

[73]  R. Tsien,et al.  Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein , 2004, Nature Biotechnology.

[74]  J. M. Requena,et al.  Cell-cycle-dependent translation of histone mRNAs is the key control point for regulation of histone biosynthesis in Leishmania infantum. , 2004, The Biochemical journal.

[75]  F. Winston,et al.  Spt10-Dependent Transcriptional Activation in Saccharomyces cerevisiae Requires both the Spt10 Acetyltransferase Domain and Spt21 , 2004, Molecular and Cellular Biology.

[76]  J. Harper,et al.  The Cyclin E/Cdk2 Substrate p220NPAT Is Required for S-Phase Entry, Histone Gene Expression, and Cajal Body Maintenance in Human Somatic Cells , 2003, Molecular and Cellular Biology.

[77]  A. Gunjan,et al.  A Rad53 Kinase-Dependent Surveillance Mechanism that Regulates Histone Protein Levels in S. cerevisiae , 2003, Cell.

[78]  L. Pinna,et al.  One‐thousand‐and‐one substrates of protein kinase CK2? , 2003, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[79]  S. Campbell,et al.  A Sequence Element Downstream of the Yeast HTB1 Gene Contributes to mRNA 3′ Processing and Cell Cycle Regulation , 2002, Molecular and Cellular Biology.

[80]  J. Harper,et al.  Coupling of DNA Synthesis and Histone Synthesis in S Phase Independent of Cyclin/cdk2 Activity , 2002, Molecular and Cellular Biology.

[81]  William F Marzluff,et al.  The human and mouse replication-dependent histone genes. , 2002, Genomics.

[82]  Ronald W. Davis,et al.  Functional profiling of the Saccharomyces cerevisiae genome , 2002, Nature.

[83]  Kevin Struhl,et al.  Genome-wide location and regulated recruitment of the RSC nucleosome-remodeling complex. , 2002, Genes & development.

[84]  Gary D Bader,et al.  Systematic Genetic Analysis with Ordered Arrays of Yeast Deletion Mutants , 2001, Science.

[85]  Gary D Bader,et al.  A Combined Experimental and Computational Strategy to Define Protein Interaction Networks for Peptide Recognition Modules , 2001, Science.

[86]  M. Curcio,et al.  Multiple regulators of Ty1 transposition in Saccharomyces cerevisiae have conserved roles in genome maintenance. , 2001, Genetics.

[87]  V. Orlando,et al.  The maternal effect gene, abnormal oocyte (abo), of Drosophila melanogaster encodes a specific negative regulator of histones , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[88]  Nicola J. Rinaldi,et al.  Serial Regulation of Transcriptional Regulators in the Yeast Cell Cycle , 2001, Cell.

[89]  M. Osley,et al.  Yeast ASF1 protein is required for cell cycle regulation of histone gene transcription. , 2001, Genetics.

[90]  N. Chaffey.  Red fluorescent protein , 2001 .

[91]  D. Botstein,et al.  Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF , 2001, Nature.

[92]  B. Kennedy,et al.  NPAT links cyclin E-Cdk2 to the regulation of replication-dependent histone gene transcription. , 2000, Genes & development.

[93]  J. Qin,et al.  Cell cycle-regulated phosphorylation of p220(NPAT) by cyclin E/Cdk2 in Cajal bodies promotes histone gene transcription. , 2000, Genes & development.

[94]  L. Moore,et al.  A yeast taf17 mutant requires the Swi6 transcriptional activator for viability and shows defects in cell cycle-regulated transcription. , 2000, Genetics.

[95]  M. Osley,et al.  A role for transcriptional repressors in targeting the yeast Swi/Snf complex. , 1999, Molecular cell.

[96]  T. Richmond,et al.  Crystal structure of the nucleosome core particle at 2.8 Å resolution , 1997, Nature.

[97]  N. Caruccio,et al.  Human La protein: a stabilizer of histone mRNA , 1997, Molecular and cellular biology.

[98]  D. Landsman,et al.  GCN5-related histone N-acetyltransferases belong to a diverse superfamily that includes the yeast SPT10 protein. , 1997, Trends in biochemical sciences.

[99]  M. Spector,et al.  Hir1p and Hir2p function as transcriptional corepressors to regulate histone gene transcription in the Saccharomyces cerevisiae cell cycle , 1997, Molecular and cellular biology.

[100]  M. Osley,et al.  Mutations in the SPT4, SPT5, and SPT6 genes alter transcription of a subset of histone genes in Saccharomyces cerevisiae. , 1996, Genetics.

[101]  G. Natsoulis,et al.  SPT10 and SPT21 are required for transcription of particular histone genes in Saccharomyces cerevisiae , 1994, Molecular and cellular biology.

[102]  M. Grunstein,et al.  Identification of a new set of cell cycle-regulatory genes that regulate S-phase transcription of histone genes in Saccharomyces cerevisiae , 1992, Molecular and cellular biology.

[103]  G. Natsoulis,et al.  The products of the SPT10 and SPT21 genes of Saccharomyces cerevisiae increase the amplitude of transcriptional regulation at a large number of unlinked loci. , 1991, The New biologist.

[104]  B. Wang,et al.  The nucleosomal core histone octamer at 3.1 A resolution: a tripartite protein assembly and a left-handed superhelix. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[105]  M. Osley,et al.  Histone regulatory (hir) mutations suppress delta insertion alleles in Saccharomyces cerevisiae. , 1991, Genetics.

[106]  H. Xu,et al.  Coding and noncoding sequences at the 3' end of yeast histone H2B mRNA confer cell cycle regulation , 1990, Molecular and cellular biology.

[107]  M. Osley,et al.  A yeast H2A-H2B promoter can be regulated by changes in histone gene copy number. , 1990, Genes & development.

[108]  L. Breeden,et al.  Cell cycle-regulated promoters in budding yeast. , 1988, Trends in genetics : TIG.

[109]  M. Grunstein,et al.  Effects of histone H4 depletion on the cell cycle and transcription of Saccharomyces cerevisiae. , 1988, The EMBO journal.

[110]  F. Winston,et al.  Isolation and analysis of a novel class of suppressor of Ty insertion mutations in Saccharomyces cerevisiae. , 1988, Genetics.

[111]  M. Osley,et al.  Trans-acting regulatory mutations that alter transcription of Saccharomyces cerevisiae histone genes , 1987, Molecular and cellular biology.

[112]  J. Carrino,et al.  Cell-cycle-regulated translation of histone mRNA in Physarum plasmodia , 1987, Journal of bacteriology.

[113]  M. Grunstein,et al.  Histone H2B repression causes cell-cycle-specific arrest in yeast: Effects on chromosomal segregation, replication, and transcription , 1987, Cell.

[114]  M. Osley,et al.  Role of transcriptional and posttranscriptional regulation in expression of histone genes in Saccharomyces cerevisiae , 1987, Molecular and cellular biology.

[115]  M. Osley,et al.  Identification of sequences in a yeast histone promoter involved in periodic transcription , 1986, Cell.

[116]  L. Hartwell,et al.  Normal stoichiometry of histone dimer sets is necessary for high fidelity of mitotic chromosome transmission , 1986, Cell.

[117]  A. Jong,et al.  The CDC8 gene of yeast encodes thymidylate kinase. , 1984, The Journal of biological chemistry.

[118]  M. Smith,et al.  Yeast H3 and H4 histone messenger RNAs are transcribed from two non-allelic gene sets. , 1983, Journal of molecular biology.

[119]  M. Osley,et al.  Cell-cycle regulation of yeast histone mRNA , 1981, Cell.

[120]  L. Hereford,et al.  Yeast histone mRNA is polyadenylated. , 1980, Nucleic acids research.

[121]  M. Rosbash,et al.  Isolation of yeast histone genes H2A and H2B , 1979, Cell.

[122]  M. Osley,et al.  The mitotic Clb cyclins are required to alleviate HIR-mediated repression of the yeast histone genes at the G1/S transition. , 2012, Biochimica et biophysica acta.

[123]  C. Cole,et al.  A genetic screen in Saccharomyces cerevisiae identifies new genes that interact with mex67-5, a temperature-sensitive allele of the gene encoding the mRNA export receptor , 2008, Molecular Genetics and Genomics.

[124]  T. Mullen,et al.  Degradation of histone mRNA requires oligouridylation followed by decapping and simultaneous degradation of the mRNA both 5' to 3' and 3' to 5'. , 2008, Genes & development.

[125]  D. Norris,et al.  A yeast H 2 AH 2 B promoter can be regulated by changes in histone gene copy number , 2007 .

[126]  M. Yanagida,et al.  A cell cycle-regulated GATA factor promotes centromeric localization of CENP-A in fission yeast. , 2003, Molecular cell.

[127]  G. Natsoulis,et al.  The SPT10 and SPT21 genes of Saccharomyces cerevisiae. , 1994, Genetics.