Distinguishing between northern salt marsh and western harvest mice

The northern subspecies of the salt marsh harvest mouse (Reithrodontomys raviventris halicoetes) is morphologically similar to the western harvest mouse (R. megalotis) with which it co-occurs in the Suisun Marsh, California, USA, and therefore they are difficult to distinguish in the field. The salt marsh harvest mouse is a federal and California state-listed endangered species, whereas the western harvest mouse has no special status. Thus, our objective was to identify the most effective field metrics that distinguish the species. First we identified a barcode of life and restriction fragment length polymorphism approach for genetically distinguishing between the species. Then we performed univariate tests to examine variation in standard external morphological traits within and between species, and found that differences between species were confounded by sex and age. We then used discriminant function analysis and multiple logistic regression (MLR) to find combinations of characters that resulted in the highest percentages of correct classification based on a data set of individuals with genetically verified species identity. The best model (MLR) correctly classified 90.1 3.5% ( x SD) of individuals, though all approaches performed relatively poorly with smaller, ostensibly younger, mice. Therefore, tail length, body length, and tail diameter, if treated in a comprehensive multivariate context, can yield substantial accuracy for distinguishing between coexisting northern salt marsh and western harvest mice. 2018 The Wildlife Society.

[1]  B. Sacks,et al.  Conservation genetics of the endangered San Francisco Bay endemic salt marsh harvest mouse (Reithrodontomys raviventris) , 2016, Conservation Genetics.

[2]  Christopher L. Owen,et al.  Morphometric tools for sexing loggerhead shrikes in California , 2015 .

[3]  D. Sustaita,et al.  Salt Marsh Harvest Mouse Demography and Habitat use in the Suisun Marsh, California , 2011 .

[4]  David J. Lohman,et al.  Cryptic species as a window on diversity and conservation. , 2007, Trends in ecology & evolution.

[5]  M. Morrison,et al.  Habitat Selection of the Salt Marsh Harvest Mouse and Sympatric Rodent Species , 2006 .

[6]  A. Wilson,et al.  Evolution of the cytochromeb gene of mammals , 1991, Journal of Molecular Evolution.

[7]  Elizabeth Arellano,et al.  Molecular systematics of Middle American harvest mice Reithrodontomys (Muridae), estimated from mitochondrial cytochrome b gene sequences. , 2005, Molecular phylogenetics and evolution.

[8]  C. Vilà,et al.  DISCORDANT PATTERNS OF MORPHOLOGICAL VARIATION IN GENETICALLY DIVERGENT POPULATIONS OF ORNATE SHREWS (SOREX ORNATUS) , 2004 .

[9]  Jeremy R. deWaard,et al.  Biological identifications through DNA barcodes , 2003, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[10]  R. Baker,et al.  PATTERNS OF KARYOTYPIC MEGAEVOLUTION IN REITHRODONTOMYS: EVIDENCE FROM A CYTOCHROME-b PHYLOGENETIC HYPOTHESIS , 2001 .

[11]  C. W. Kilpatrick,et al.  Morphological differentiation and identification of Peromyscus leucopus and P. maniculatus in northeastern North America , 1996 .

[12]  M. Skupski Population Ecology of the Western Harvest Mouse, Reithrodontomys megalotis: A Long-Term Perspective , 1995 .

[13]  J. Patton,et al.  The diversification of South American murid rodents: evidence from mitochondrial DNA sequence data for the akodontine tribe , 1993 .

[14]  G. Adler,et al.  Demography of a Habitat Generalist, The White-Footed Mouse, in a Heterogeneous Environment. , 1987, Ecology.

[15]  C. M. Lessells,et al.  Unrepeatable repeatabilities: a common mistake , 1987 .

[16]  R. Baker,et al.  Test of alternative hypotheses concerning the origin of Reithrodontomys raviventris: genetic analysis , 1984 .

[17]  R. Baker,et al.  Chromosomal Studies and Evolutionary Relationships of an Endangered Species, Reithrodontomys raviventris , 1984 .