New genes in old sequence: a strategy for finding genes in the bacterial genome.

[1]  A. Danchin,et al.  Evidence for horizontal gene transfer in Escherichia coli speciation. , 1991, Journal of molecular biology.

[2]  P. Green,et al.  Ancient conserved regions in new gene sequences and the protein databases. , 1993, Science.

[3]  Mark Borodovsky,et al.  GENMARK: Parallel Gene Recognition for Both DNA Strands , 1993, Comput. Chem..

[4]  J. Sambrook,et al.  Protein folding in the cell , 1992, Nature.

[5]  L. Poulsen,et al.  The hok killer gene family in gram-negative bacteria. , 1990, The New biologist.

[6]  C. Sander,et al.  Yeast chromosome III: new gene functions. , 1994, The EMBO journal.

[7]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[8]  J.-M. CIaverie.  Database of ancient sequences , 1993, Nature.

[9]  R. Doolittle.  Of urfs and orfs : a primer on how to analyze devised amino acid sequences , 1986 .

[10]  Amos Bairoch,et al.  The PROSITE dictionary of sites and patterns in proteins, its current status , 1993, Nucleic Acids Res..

[11]  S. Altschul,et al.  Issues in searching molecular sequence databases , 1994, Nature Genetics.

[12]  P. Sharp.  Does the 'non-coding' strand code? , 1985, Nucleic acids research.

[13]  T. Kawula,et al.  Mutations in a gene encoding a new Hsp70 suppress rapid DNA inversion and bgl activation, but not proU derepression, in hns-1 mutant Escherichia coli , 1994, Journal of bacteriology.

[14]  David J. States,et al.  Identification of protein coding regions by database similarity search , 1993, Nature Genetics.

[15]  M. Bishop,et al.  Nucleic acid and protein sequence analysis : a practical approach , 1987 .

[16]  Manfred Kröger,et al.  Compilation of DNA sequences of Escherichia coli (update 1993) , 1990, Nucleic Acids Res..

[17]  E. Koonin,et al.  A conserved domain in putative bacterial and bacteriophage transglycosylases. , 1994, Trends in biochemical sciences.

[18]  J. Fickett,et al.  Assessment of protein coding measures. , 1992, Nucleic acids research.

[19]  G D Schuler,et al.  A workbench for multiple alignment construction and analysis , 1991, Proteins.

[20]  John C. Wootton,et al.  Statistics of Local Complexity in Amino Acid Sequences and Sequence Databases , 1993, Comput. Chem..

[21]  F. Blattner,et al.  Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes. , 1992, Science.