Diversity of base-pair conformations and their occurrence in rRNA structure and RNA structural motifs.

[1]  Scott A. Strobel,et al.  Crystal structure of a self-splicing group I intron with both exons , 2004, Nature.

[2]  W. B. Arendall,et al.  RNA backbone is rotameric , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[3]  Jerzy Leszczynski,et al.  Unique tertiary and neighbor interactions determine conservation patterns of Cis Watson-Crick A/G base-pairs. , 2003, Journal of molecular biology.

[4]  Alan C Cheng,et al.  Structural diversity and isomorphism of hydrogen-bonded base interactions in nucleic acids. , 2003, Journal of molecular biology.

[5]  R. Gutell,et al.  The lonepair triloop: a new motif in RNA structure. , 2003, Journal of molecular biology.

[6]  Szilvia Szép,et al.  The crystal structure of a 26-nucleotide RNA containing a hook-turn. , 2003, RNA.

[7]  F. Major,et al.  RNA canonical and non-canonical base pairing types: a recognition method and complete repertoire. , 2002, Nucleic acids research.

[8]  G. Fox,et al.  Frequent occurrence of the T-loop RNA folding motif in ribosomal RNAs. , 2002, RNA.

[9]  Eric Westhof,et al.  The non-Watson-Crick base pairs and their associated isostericity matrices. , 2002, Nucleic acids research.

[10]  Stephen Neidle,et al.  Crystal structure of the potassium form of an Oxytricha nova G-quadruplex. , 2002, Journal of molecular biology.

[11]  R. Gutell,et al.  The accuracy of ribosomal RNA comparative structure models. , 2002, Current opinion in structural biology.

[12]  P. Strazewski,et al.  Internally mismatched RNA: pH and solvent dependence of the thermal unfolding of tRNA(Ala) acceptor stem microhairpins. , 2002, Journal of the American Chemical Society.

[13]  Qin Zhao,et al.  NCIR: a database of non-canonical interactions in known RNA structures , 2002, Nucleic Acids Res..

[14]  Frank Schluenzen,et al.  High Resolution Structure of the Large Ribosomal Subunit from a Mesophilic Eubacterium , 2001, Cell.

[15]  T. Steitz,et al.  The kink‐turn: a new RNA secondary structure motif , 2001, The EMBO journal.

[16]  S C Harvey,et al.  AA.AG@helix.ends: A:A and A:G base-pairs at the ends of 16 S and 23 S rRNA helices. , 2001, Journal of molecular biology.

[17]  A Yonath,et al.  Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3 , 2001, The EMBO journal.

[18]  Thomas A. Steitz,et al.  RNA tertiary interactions in the large ribosomal subunit: The A-minor motif , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[19]  Jennifer A. Doudna,et al.  A universal mode of helix packing in RNA , 2001, Nature Structural Biology.

[20]  T. Cech,et al.  Structural basis of the enhanced stability of a mutant ribozyme domain and a detailed view of RNA--solvent interactions. , 2001, Structure.

[21]  M. Vallazza,et al.  Structure of an RNA duplex with an unusual G.C pair in wobble-like conformation at 1.6 A resolution. , 2001, Acta crystallographica. Section D, Biological crystallography.

[22]  O. Fedoroff,et al.  Cationic porphyrins promote the formation of i-motif DNA and bind peripherally by a nonintercalative mechanism. , 2000, Biochemistry.

[23]  R. Gutell,et al.  A story: unpaired adenosine bases in ribosomal RNAs. , 2000, Journal of molecular biology.

[24]  A. Serganov,et al.  The crystal structure of UUCG tetraloop. , 2000, Journal of molecular biology.

[25]  C. Vonrhein,et al.  Structure of the 30S ribosomal subunit , 2000, Nature.

[26]  H. Bernstein.  Recent changes to RasMol, recombining the variants. , 2000, Trends in biochemical sciences.

[27]  T. Steitz,et al.  The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. , 2000, Science.

[28]  D Gautheret,et al.  Predicting U-turns in ribosomal RNA with comparative sequence analysis. , 2000, Journal of molecular biology.

[29]  A. Phan,et al.  The solution structure and internal motions of a fragment of the cytidine-rich strand of the human telomere. , 2000, Journal of molecular biology.

[30]  D. Leitner,et al.  Influence of sequence-dependent cytosine protonation and methylation on DNA triplex stability. , 2000, Biochemistry.

[31]  T. Steitz,et al.  Structure of Escherichia coli ribosomal protein L25 complexed with a 5S rRNA fragment at 1.8-A resolution. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[32]  M. Lu,et al.  5S rRNA断片と複合体形成した大腸菌リボソーム蛋白質L25の1.8Å分解能での構造 , 2000 .

[33]  E. Lattman,et al.  Crystal structure of a conserved ribosomal protein-RNA complex. , 1999, Science.

[34]  J. McCutcheon,et al.  A Detailed View of a Ribosomal Active Site The Structure of the L11–RNA Complex , 1999, Cell.

[35]  S Thirup,et al.  The crystal structure of Cys-tRNACys-EF-Tu-GDPNP reveals general and specific features in the ternary complex and in tRNA. , 1999, Structure.

[36]  E. Westhof,et al.  A common motif organizes the structure of multi-helix loops in 16 S and 23 S ribosomal RNAs. , 1998, Journal of molecular biology.

[37]  M. Perbandt,et al.  Crystal structure of domain E of Thermus flavus 5S rRNA: a helical RNA structure including a hairpin loop , 1998, FEBS letters.

[38]  Vasantha Pattabhi,et al.  CH...O Hydrogen Bonds in -sheets , 1997 .

[39]  D Gautheret,et al.  Inferring the conformation of RNA base pairs and triples from patterns of sequence variation. , 1997, Nucleic acids research.

[40]  E Westhof,et al.  Visualizing the Logic Behind RNA Self-Assembly , 1996, Science.

[41]  C. Kundrot,et al.  Crystal Structure of a Group I Ribozyme Domain: Principles of RNA Packing , 1996, Science.

[42]  C. Kundrot,et al.  RNA Tertiary Structure Mediation by Adenosine Platforms , 1996, Science.

[43]  A. Pardi,et al.  Solution structure of the CUUG hairpin loop: a novel RNA tetraloop motif. , 1995, Biochemistry.

[44]  D Gautheret,et al.  G.U base pairing motifs in ribosomal RNA. , 1995, RNA.

[45]  R A Sayle,et al.  RASMOL: biomolecular graphics for all. , 1995, Trends in biochemical sciences.

[46]  A. Pardi,et al.  GNRA tetraloops make a U-turn. , 1995, RNA.

[47]  B. Wimberly.  A common RNA loop motif as a docking module and its function in the hammerhead ribozyme , 1994, Nature Structural Biology.

[48]  D Gautheret,et al.  A major family of motifs involving G.A mismatches in ribosomal RNA. , 1994, Journal of molecular biology.

[49]  D. Patel,et al.  Solution structure of a parallel-stranded G-quadruplex DNA. , 1993, Journal of molecular biology.

[50]  G. Varani,et al.  The conformation of loop E of eukaryotic 5S ribosomal RNA. , 1993, Biochemistry.

[51]  R. Gutell.  The Simplicity Behind the Elucidation of Complex Structure in Ribosomal RNA , 1993 .

[52]  Volker A. Erdmann,et al.  The Translational Apparatus , 1993, Springer US.

[53]  D. Turner,et al.  Stabilities of consecutive A.C, C.C, G.G, U.C, and U.U mismatches in RNA internal loops: Evidence for stable hydrogen-bonded U.U and C.C.+ pairs. , 1991, Biochemistry.

[54]  H. Heus,et al.  Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops. , 1991, Science.

[55]  D. Moras,et al.  Class II aminoacyl transfer RNA synthetases: crystal structure of yeast aspartyl-tRNA synthetase complexed with tRNA(Asp) , 1991, Science.

[56]  G. Varani,et al.  Structure of an unusually stable RNA hairpin. , 1991, Biochemistry.

[57]  C R Woese,et al.  Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops". , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[58]  D. Turner,et al.  Effects of GA mismatches on the structure and thermodynamics of RNA internal loops. , 1990, Biochemistry.

[59]  G. Varani,et al.  Solution structure of an unusually stable RNA hairpin, 5GGAC(UUCG)GUCC , 1990, Nature.

[60]  I. Tinoco,et al.  Solution conformation of an RNA hairpin loop. , 1990, Biochemistry.

[61]  C R Woese,et al.  Higher order structural elements in ribosomal RNAs: pseudo-knots and the use of noncanonical pairs. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[62]  S. Diekmann,et al.  Definitions and nomenclature of nucleic acid structure parameters. , 1989, The EMBO journal.

[63]  J L Sussman,et al.  Crystal structure of yeast phenylalanine transfer RNA. I. Crystallographic refinement. , 1978, Journal of molecular biology.

[64]  A. Rich,et al.  Structural domains of transfer RNA molecules. , 1976, Science.

[65]  F. Crick.  Codon--anticodon pairing: the wobble hypothesis. , 1966, Journal of molecular biology.

[66]  K. Trueblood,et al.  Base pairing in DNA. , 1960, Journal of molecular biology.

[67]  J. Donohue,et al.  HYDROGEN-BONDED HELICAL CONFIGURATIONS OF POLYNUCLEOTIDES. , 1956, Proceedings of the National Academy of Sciences of the United States of America.

[68]  F. Crick,et al.  Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid , 1953, Nature.

[69]  F. Crick,et al.  Genetical Implications of the Structure of Deoxyribonucleic Acid , 1953, Nature.