Many roads to symmetry breaking: molecular mechanisms and theoretical models of yeast cell polarity
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[1] Timothy C Elston,et al. Role of competition between polarity sites in establishing a unique front , 2015, eLife.
[2] K. Sawin,et al. Remodeling of the Fission Yeast Cdc42 Cell-Polarity Module via the Sty1 p38 Stress-Activated Protein Kinase Pathway , 2016, Current Biology.
[3] A. M. Turing,et al. The chemical basis of morphogenesis , 1952, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences.
[4] Jasmine A. Nirody,et al. An introduction to linear stability analysis for deciphering spatial patterns in signaling networks , 2016, bioRxiv.
[5] J. Sibarita,et al. Robust polarity establishment occurs via an endocytosis-based cortical corralling mechanism , 2013, The Journal of cell biology.
[6] I. Herskowitz,et al. The role of Far1p in linking the heterotrimeric G protein to polarity establishment proteins during yeast mating. , 1998, Science.
[7] Henry R. Bourne,et al. Cell polarity: A chemical compass , 2002, Nature.
[8] Jared L. Johnson,et al. New Insights into How the Rho Guanine Nucleotide Dissociation Inhibitor Regulates the Interaction of Cdc42 with Membranes* , 2009, The Journal of Biological Chemistry.
[9] A. Mogilner,et al. Cell Polarity: Quantitative Modeling as a Tool in Cell Biology , 2012, Science.
[10] E. Bi,et al. Adjacent positioning of cellular structures enabled by a Cdc42 GTPase-activating protein–mediated zone of inhibition , 2007, The Journal of cell biology.
[11] K. Kozminski,et al. Cdc42 Interacts with the Exocyst and Regulates Polarized Secretion* , 2001, The Journal of Biological Chemistry.
[12] Brian D. Slaughter,et al. Flippase-mediated phospholipid asymmetry promotes fast Cdc42 recycling in dynamic maintenance of cell polarity , 2012, Nature Cell Biology.
[13] Alexandra Jilkine,et al. Asymptotic and Bifurcation Analysis of Wave-Pinning in a Reaction-Diffusion Model for Cell Polarization , 2010, SIAM J. Appl. Math..
[14] M. Rao,et al. Active Remodeling of Cortical Actin Regulates Spatiotemporal Organization of Cell Surface Molecules , 2012, Cell.
[15] A. Bretscher,et al. Polarization of cell growth in yeast. I. Establishment and maintenance of polarity states. , 2000, Journal of cell science.
[16] E. Bi,et al. Cell Polarization and Cytokinesis in Budding Yeast , 2012, Genetics.
[17] Jonathon Howard,et al. Turing's next steps: the mechanochemical basis of morphogenesis , 2011, Nature Reviews Molecular Cell Biology.
[18] Lani Wu,et al. Spontaneous Cell Polarization Through Actomyosin-Based Delivery of the Cdc42 GTPase , 2003, Science.
[19] Yevgeny Berdichevsky,et al. Dissociation of Rac1(GDP)·RhoGDI Complexes by the Cooperative Action of Anionic Liposomes Containing Phosphatidylinositol 3,4,5-Trisphosphate, Rac Guanine Nucleotide Exchange Factor, and GTP* , 2008, Journal of Biological Chemistry.
[20] P. Nurse,et al. Spatial control of Cdc42 activation determines cell width in fission yeast , 2011, Molecular biology of the cell.
[21] Daniel J. Lew,et al. A Morphogenesis Checkpoint Monitors the Actin Cytoskeleton in Yeast , 1998, The Journal of cell biology.
[22] Brian D. Slaughter,et al. Non-uniform membrane diffusion enables steady-state cell polarization via vesicular trafficking , 2013, Nature Communications.
[23] A. Bretscher,et al. Polarization of cell growth in yeast. , 2000, Journal of cell science.
[24] Anna Payne-Tobin Jost,et al. Probing Yeast Polarity with Acute, Reversible, Optogenetic Inhibition of Protein Function. , 2015, ACS synthetic biology.
[25] M. Endo,et al. The Cdc42 Binding and Scaffolding Activities of the Fission Yeast Adaptor Protein Scd2* , 2003, The Journal of Biological Chemistry.
[26] Adriana T. Dawes,et al. PAR-3 oligomerization may provide an actin-independent mechanism to maintain distinct par protein domains in the early Caenorhabditis elegans embryo. , 2011, Biophysical journal.
[27] J. Davies,et al. Molecular Biology of the Cell , 1983, Bristol Medico-Chirurgical Journal.
[28] Michelle D. Larrea,et al. Regulation of cell diameter, For3p localization, and cell symmetry by fission yeast Rho-GAP Rga4p. , 2007, Molecular biology of the cell.
[29] Leah Edelstein-Keshet,et al. Synthetic spatially graded Rac activation drives cell polarization and movement , 2012, Proceedings of the National Academy of Sciences.
[30] Timothy C Elston,et al. Role of Polarized G Protein Signaling in Tracking Pheromone Gradients. , 2015, Developmental cell.
[31] M. Peter,et al. A Cellular System for Spatial Signal Decoding in Chemical Gradients. , 2015, Developmental cell.
[32] M. Peter,et al. Phosphorylation of the Cdc42 exchange factor Cdc24 by the PAK-like kinase Cla4 may regulate polarized growth in yeast. , 2000, Molecular cell.
[33] J. Tyson,et al. Design principles of biochemical oscillators , 2008, Nature Reviews Molecular Cell Biology.
[34] A. R. Khan,et al. Structural biology of Arf and Rab GTPases' effector recruitment and specificity. , 2013, Structure.
[35] H. Bourne,et al. A chemical compass. , 2002, Nature.
[36] Chun-Chen Kuo,et al. Cdc42p regulation of the yeast formin Bni1p mediated by the effector Gic2p , 2012, Molecular biology of the cell.
[37] D. Lew,et al. Interaction between bud-site selection and polarity-establishment machineries in budding yeast , 2013, Philosophical Transactions of the Royal Society B: Biological Sciences.
[38] Alexandra V. Pokhilko,et al. Computational Model Explains High Activity and Rapid Cycling of Rho GTPases within Protein Complexes , 2006, PLoS Comput. Biol..
[39] K. Rittinger,et al. Interactions between Cdc42 and the scaffold protein Scd2: requirement of SH3 domains for GTPase binding. , 2005, The Biochemical journal.
[40] J. Pringle,et al. Molecular characterization of CDC42, a Saccharomyces cerevisiae gene involved in the development of cell polarity , 1990, The Journal of cell biology.
[41] K. Shiozaki,et al. Pom1 DYRK Regulates Localization of the Rga4 GAP to Ensure Bipolar Activation of Cdc42 in Fission Yeast , 2008, Current Biology.
[42] Bruce Bowerman,et al. Symmetry breaking in biology. , 2010, Cold Spring Harbor perspectives in biology.
[43] K. Knobeloch,et al. Cell-Intrinsic Adaptation Arising from Chronic Ablation of a Key Rho GTPase Regulator. , 2016, Developmental cell.
[44] Amy S. Gladfelter,et al. Scaffold-mediated symmetry breaking by Cdc42p , 2003, Nature Cell Biology.
[45] A. Seminara,et al. Phosphatidylinositol-4-phosphate-dependent membrane traffic is critical for fungal filamentous growth , 2015, Proceedings of the National Academy of Sciences.
[46] Arezki Boudaoud,et al. Symmetry breaking in spore germination relies on an interplay between polar cap stability and spore wall mechanics. , 2014, Developmental cell.
[47] Albert-László Barabási,et al. Control Principles of Complex Networks , 2015, ArXiv.
[48] Hay-Oak Park,et al. Mathematical Analysis of Spontaneous Emergence of Cell Polarity , 2014, Bulletin of mathematical biology.
[49] Andrew B. Goryachev,et al. Daughter Cell Identity Emerges from the Interplay of Cdc42, Septins, and Exocytosis , 2013, Developmental cell.
[50] I. Prigogine,et al. On symmetry-breaking instabilities in dissipative systems , 1967 .
[51] Sophie G. Martin. Spontaneous cell polarization: Feedback control of Cdc42 GTPase breaks cellular symmetry , 2015, BioEssays : news and reviews in molecular, cellular and developmental biology.
[52] K. Ogura,et al. Solution Structure of a Novel Cdc42 Binding Module of Bem1 and Its Interaction with Ste20 and Cdc42* , 2010, The Journal of Biological Chemistry.
[53] Timothy C. Elston,et al. Negative Feedback Enhances Robustness in the Yeast Polarity Establishment Circuit , 2012, Cell.
[54] Sophie G. Martin,et al. The Tea4–PP1 landmark promotes local growth by dual Cdc42 GEF recruitment and GAP exclusion , 2014, Journal of Cell Science.
[55] D. Lew,et al. Beyond symmetry-breaking: competition and negative feedback in GTPase regulation. , 2013, Trends in cell biology.
[56] Erik E. Griffin,et al. Regulation of the MEX-5 Gradient by a Spatially Segregated Kinase/Phosphatase Cycle , 2011, Cell.
[57] James E Ferrell,et al. Feedback loops and reciprocal regulation: recurring motifs in the systems biology of the cell cycle. , 2013, Current opinion in cell biology.
[58] S. Molshanski-Mor,et al. Liposomes Comprising Anionic but Not Neutral Phospholipids Cause Dissociation of Rac(1 or 2)·RhoGDI Complexes and Support Amphiphile-independent NADPH Oxidase Activation by Such Complexes* , 2006, Journal of Biological Chemistry.
[59] S. Glashow,et al. Spontaneous Breakdown of Elementary Particle Symmetries , 1962 .
[60] I. Herskowitz,et al. Two active states of the Ras-related Bud1/Rsr1 protein bind to different effectors to determine yeast cell polarity. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[61] J. Thorner,et al. Pheromone-induced anisotropy in yeast plasma membrane phosphatidylinositol-4,5-bisphosphate distribution is required for MAPK signaling , 2010, Proceedings of the National Academy of Sciences.
[62] S. Fields,et al. A protein interaction map for cell polarity development , 2001, The Journal of cell biology.
[63] M. Leonetti,et al. Emergence of symmetry breaking in fucoid zygotes. , 2007, Trends in plant science.
[64] Elsen Tjhung,et al. Spontaneous symmetry breaking in active droplets provides a generic route to motility , 2012, Proceedings of the National Academy of Sciences.
[65] A. Hall,et al. A Conserved Binding Motif Defines Numerous Candidate Target Proteins for Both Cdc42 and Rac GTPases (*) , 1995, The Journal of Biological Chemistry.
[66] Erwin Frey,et al. Establishment of a robust single axis of cell polarity by coupling multiple positive feedback loops , 2013, Nature Communications.
[67] Patrick Brennwald,et al. Quantitative Analysis of Membrane Trafficking in Regulation of Cdc42 Polarity , 2014, Traffic.
[68] J. Gerhart,et al. Molecular “Vitalism” , 2000, Cell.
[69] J. Chant,et al. A localized GTPase exchange factor, Bud5, determines the orientation of division axes in yeast , 2001, Current Biology.
[70] Eugenio Marco,et al. Endocytosis Optimizes the Dynamic Localization of Membrane Proteins that Regulate Cortical Polarity , 2007, Cell.
[71] K. Hahn,et al. FRET binding antenna reports spatiotemporal dynamics of GDI-Cdc42 GTPase interactions , 2016, Nature chemical biology.
[72] Stephan W. Grill,et al. Parameter-space topology of models for cell polarity , 2014 .
[73] Sophie G. Martin,et al. Regulation of the formin for3p by cdc42p and bud6p. , 2007, Molecular biology of the cell.
[74] I. Prigogine,et al. Symmetry Breaking Instabilities in Biological Systems , 1969, Nature.
[75] Daniel J. Lew,et al. Parallel Actin-Independent Recycling Pathways Polarize Cdc42 in Budding Yeast , 2016, Current Biology.
[76] D. Pellman,et al. Symmetry Breaking: Scaffold Plays Matchmaker for Polarity Signaling Proteins , 2008, Current Biology.
[77] Alexandra Jilkine,et al. Wave-pinning and cell polarity from a bistable reaction-diffusion system. , 2008, Biophysical journal.
[78] Kay Hofmann,et al. A positive feedback loop stabilizes the guanine‐nucleotide exchange factor Cdc24 at sites of polarization , 2002, The EMBO journal.
[79] C. Der,et al. GEF means go: turning on RHO GTPases with guanine nucleotide-exchange factors , 2005, Nature Reviews Molecular Cell Biology.
[80] Sophie G. Martin,et al. Spontaneous Cdc42 Polarization Independent of GDI-Mediated Extraction and Actin-Based Trafficking , 2015, PLoS biology.
[81] R. Goody,et al. RabGDI displacement by DrrA from Legionella is a consequence of its guanine nucleotide exchange activity. , 2009, Molecular cell.
[82] Indrani Bose,et al. Singularity in Polarization: Rewiring Yeast Cells to Make Two Buds , 2009, Cell.
[83] Anita T. Layton,et al. Mechanistic mathematical model of polarity in yeast , 2012, Molecular biology of the cell.
[84] Sophie G. Martin,et al. Actin cables and the exocyst form two independent morphogenesis pathways in the fission yeast , 2011, Molecular biology of the cell.
[85] D. Drubin. Development of cell polarity in budding yeast , 1991, Cell.
[86] Joan E. Adamo,et al. Yeast Cdc42 functions at a late step in exocytosis, specifically during polarized growth of the emerging bud , 2001, The Journal of cell biology.
[87] J. Pringle,et al. CDC42 and CDC43, two additional genes involved in budding and the establishment of cell polarity in the yeast Saccharomyces cerevisiae , 1990, The Journal of cell biology.
[88] A. Levchenko,et al. Models of eukaryotic gradient sensing: application to chemotaxis of amoebae and neutrophils. , 2001, Biophysical journal.
[89] M. Ahmadian,et al. Liposome Reconstitution and Modulation of Recombinant Prenylated Human Rac1 by GEFs, GDI1 and Pak1 , 2014, PloS one.
[90] Herbert Waldmann,et al. Membrane targeting mechanism of Rab GTPases elucidated by semisynthetic protein probes. , 2010, Nature chemical biology.
[91] Matthias Peter,et al. The nucleotide exchange factor Cdc24p may be regulated by auto‐inhibition , 2004, The EMBO journal.
[92] Jian Zhang,et al. Membrane association and functional regulation of Sec3 by phospholipids and Cdc42 , 2008, The Journal of cell biology.
[93] K. Mostov,et al. Regulation of cell polarity during epithelial morphogenesis. , 2008, Current opinion in cell biology.
[94] Alexander van Oudenaarden,et al. A system of counteracting feedback loops regulates Cdc42p activity during spontaneous cell polarization. , 2005, Developmental cell.
[95] Gregory R. Hoffman,et al. Structure of the Rho Family GTP-Binding Protein Cdc42 in Complex with the Multifunctional Regulator RhoGDI , 2000, Cell.
[96] Sigurd B. Angenent,et al. On the spontaneous emergence of cell polarity , 2008, Nature.
[97] J. Pringle,et al. Multicopy suppression of the cdc24 budding defect in yeast by CDC42 and three newly identified genes including the ras-related gene RSR1. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[98] References , 1971 .
[99] E. Bi,et al. Central Roles of Small GTPases in the Development of Cell Polarity in Yeast and Beyond , 2007, Microbiology and Molecular Biology Reviews.
[100] I. Macara,et al. Signaling pathways in cell polarity. , 2012, Cold Spring Harbor perspectives in biology.
[101] Nicolas Minc,et al. Electrochemical control of cell and tissue polarity. , 2014, Annual review of cell and developmental biology.
[102] Leah Edelstein-Keshet,et al. Analysis of a minimal Rho-GTPase circuit regulating cell shape , 2016, Physical biology.
[103] A. Ridley,et al. Rho GTPase signalling in cell migration , 2015, Current opinion in cell biology.
[104] Andrew B Goryachev,et al. Dynamics of Cdc42 network embodies a Turing‐type mechanism of yeast cell polarity , 2008, FEBS letters.
[105] Jean-François Rupprecht,et al. Actin Flows Mediate a Universal Coupling between Cell Speed and Cell Persistence , 2015, Cell.
[106] Timothy C. Elston,et al. Tracking Shallow Chemical Gradients by Actin-Driven Wandering of the Polarization Site , 2013, Current Biology.
[107] Erwin Frey,et al. GDI-Mediated Cell Polarization in Yeast Provides Precise Spatial and Temporal Control of Cdc42 Signaling , 2013, PLoS Comput. Biol..
[108] Alexandra Jilkine,et al. A Comparison of Mathematical Models for Polarization of Single Eukaryotic Cells in Response to Guided Cues , 2011, PLoS Comput. Biol..
[109] Patrick Brennwald,et al. The Exo70 Subunit of the Exocyst Is an Effector for Both Cdc42 and Rho3 Function in Polarized Exocytosis , 2010, Molecular biology of the cell.
[110] Bruno Antonny,et al. Dissociation of GDP Dissociation Inhibitor and Membrane Translocation Are Required for Efficient Activation of Rac by the Dbl Homology-Pleckstrin Homology Region of Tiam* , 2003, The Journal of Biological Chemistry.
[111] H. Begthel,et al. ATP8B1-mediated spatial organization of Cdc42 signaling maintains singularity during enterocyte polarization , 2015, The Journal of cell biology.
[112] F. Tostevin,et al. Modeling the establishment of PAR protein polarity in the one-cell C. elegans embryo. , 2008, Biophysical journal.
[113] T. Höfken,et al. The Rho GDI Rdi1 regulates Rho GTPases by distinct mechanisms. , 2008, Molecular biology of the cell.
[114] A. Hyman,et al. Polarization of PAR Proteins by Advective Triggering of a Pattern-Forming System , 2011, Science.
[115] Brian D. Slaughter,et al. Independence of symmetry breaking on Bem1-mediated autocatalytic activation of Cdc42 , 2013, The Journal of cell biology.
[116] D. Lew,et al. Stress-specific Activation Mechanisms for the “Cell Integrity” MAPK Pathway* , 2004, Journal of Biological Chemistry.
[117] D. Drubin,et al. Origins of Cell Polarity , 1996, Cell.
[118] Hay-Oak Park,et al. Polarization of Diploid Daughter Cells Directed by Spatial Cues and GTP Hydrolysis of Cdc42 in Budding Yeast , 2013, PloS one.
[119] R. Goody,et al. bMERB domains are bivalent Rab8 family effectors evolved by gene duplication , 2016, eLife.
[120] Daniel J. Lew,et al. Symmetry-Breaking Polarization Driven by a Cdc42p GEF-PAK Complex , 2008, Current Biology.
[121] Matthias Peter,et al. Phosphorylation of Bem2p and Bem3p may contribute to local activation of Cdc42p at bud emergence , 2007, The EMBO journal.
[122] J. Moskow,et al. Assembly of Scaffold-mediated Complexes Containing Cdc42p, the Exchange Factor Cdc24p, and the Effector Cla4p Required for Cell Cycle-regulated Phosphorylation of Cdc24p* , 2001, The Journal of Biological Chemistry.
[123] Matteo Semplice,et al. A Bistable Model of Cell Polarity , 2012, PloS one.
[124] Brian D. Slaughter,et al. Dual modes of cdc42 recycling fine-tune polarized morphogenesis. , 2009, Developmental cell.
[125] A. Goryachev,et al. CDC-42 and RAC-1 regulate opposite chemotropisms in Neurospora crassa , 2014, Journal of Cell Science.
[126] M. Wigler,et al. Cooperative interaction of S. pombe proteins required for mating and morphogenesis , 1994, Cell.
[127] Hay-Oak Park,et al. Regulation of Cdc42 polarization by the Rsr1 GTPase and Rga1, a Cdc42 GTPase-activating protein, in budding yeast , 2015, Journal of Cell Science.
[128] I. Herskowitz,et al. Genetic control of bud site selection in yeast by a set of gene products that constitute a morphogenetic pathway , 1991, Cell.
[129] K. Hahn,et al. Activation of Endogenous Cdc42 Visualized in Living Cells , 2004, Science.
[130] J. Caviston,et al. The role of Cdc42p GTPase-activating proteins in assembly of the septin ring in yeast. , 2003, Molecular biology of the cell.
[131] R. Martín-García,et al. Rga6 is a fission yeast Rho GAP involved in Cdc42 regulation of polarized growth , 2016, Molecular biology of the cell.
[132] Daniel J. Lew,et al. Polarity establishment requires localized activation of Cdc42 , 2015, The Journal of cell biology.
[133] Navin Pokala,et al. High Rates of Actin Filament Turnover in Budding Yeast and Roles for Actin in Establishment and Maintenance of Cell Polarity Revealed Using the Actin Inhibitor Latrunculin-A , 1997, The Journal of cell biology.
[134] Pablo A Iglesias,et al. Navigating through models of chemotaxis. , 2008, Current opinion in cell biology.
[135] Hay-Oak Park,et al. A GDP/GTP Exchange Factor Involved in Linking a Spatial Landmark to Cell Polarity , 2001, Science.
[136] Anita T. Layton,et al. Modeling Vesicle Traffic Reveals Unexpected Consequences for Cdc42p-Mediated Polarity Establishment , 2011, Current Biology.