Remarkable Interkingdom Conservation of Intron Positions and Massive, Lineage-Specific Intron Loss and Gain in Eukaryotic Evolution

[1]  Darren A. Natale,et al.  The COG database: an updated version includes eukaryotes , 2003, BMC Bioinformatics.

[2]  Michael Lynch,et al.  The evolution of spliceosomal introns. , 2002, Current opinion in genetics & development.

[3]  Alexei Fedorov,et al.  Large-scale comparison of intron positions among animal, plant, and fungal genes , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[4]  S. Blair Hedges,et al.  The origin and evolution of model organisms , 2002, Nature Reviews Genetics.

[5]  Jonathan E. Allen,et al.  Genome sequence of the human malaria parasite Plasmodium falciparum , 2002, Nature.

[6]  J. Vaughn,et al.  The Evolution of Single-Copy Drosophila Nuclear 4f-rnp Genes: Spliceosomal Intron Losses Create Polymorphic Alleles , 2002, Journal of Molecular Evolution.

[7]  A. Simpson,et al.  Eukaryotic evolution: Early origin of canonical introns , 2002, Nature.

[8]  W. Doolittle,et al.  The chaperonin genes of jakobid and jakobid-like flagellates: implications for eukaryotic evolution. , 2002, Molecular biology and evolution.

[9]  Andrew G McArthur,et al.  A spliceosomal intron in Giardia lamblia , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[10]  S. Aubourg,et al.  Evolution of intron/exon structure of DEAD helicase family genes in Arabidopsis, Caenorhabditis, and Drosophila. , 2001, Genome research.

[11]  M. Long,et al.  Testing the "proto-splice sites" model of intron origin: evidence from analysis of intron phase correlations. , 2000, Molecular biology and evolution.

[12]  W. Doolittle,et al.  A kingdom-level phylogeny of eukaryotes based on combined protein data. , 2000, Science.

[13]  E. Koonin,et al.  Intron sliding in conserved gene families. , 2000, Trends in genetics : TIG.

[14]  A. Lamond.  RNA splicing: Running rings around RNA , 1999, Nature.

[15]  A. Newman,et al.  RNA splicing , 1998, Current Biology.

[16]  J. Logsdon,et al.  The recent origins of spliceosomal introns revisited. , 1998, Current opinion in genetics & development.

[17]  Arlin Stoltzfus,et al.  Molecular evolution: Recent cases of spliceosomal intron gain? , 1998, Current Biology.

[18]  S J de Souza,et al.  Toward a resolution of the introns early/late debate: only phase zero introns are correlated with the structure of ancient proteins. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[19]  D. Lipman,et al.  A genomic perspective on protein families. , 1997, Science.

[20]  J D Palmer,et al.  Intron "sliding" and the diversity of intron positions. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[21]  A Yoshida,et al.  Exon/intron structure of aldehyde dehydrogenase genes supports the "introns-late" theory. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[22]  R. Raff,et al.  Evidence for a clade of nematodes, arthropods and other moulting animals , 1997, Nature.

[23]  Sudhir Kumar,et al.  Evolutionary relationships of eukaryotic kingdoms , 1996, Journal of Molecular Evolution.

[24]  J D Palmer,et al.  Seven newly discovered intron positions in the triose-phosphate isomerase gene: evidence for the introns-late theory. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[25]  W. Gilbert,et al.  On the ancient nature of introns. , 1993, Gene.

[26]  N. Dibb,et al.  Proto-splice site model of intron origin. , 1991, Journal of theoretical biology.

[27]  Walter Gilbert,et al.  The triosephosphate isomerase gene from maize introns antedate the plant-animal divergence , 1986, Cell.

[28]  T. Cavalier-smith,et al.  Selfish DNA and the origin of introns , 1985, Nature.

[29]  W. Gilbert,et al.  The exon theory of genes. , 1987, Cold Spring Harbor symposia on quantitative biology.