Hypomethylation coordinates antagonistically with hypermethylation in cancer development: a case study of leukemia
暂无分享,去创建一个
Dong Xu | Jonathan D. Wren | Huidong Shi | Garima Kushwaha | Mikhail Dozmorov | Dong Xu | Huidong Shi | J. Wren | Garima Kushwaha | M. Dozmorov | Jing Qiu | Jing Qiu
[1] S. Rajalakshmi,et al. 5-azacytidine potentiates initiation induced by carcinogens in rat liver. , 1985, Carcinogenesis.
[2] A. Feinberg,et al. Reduced genomic 5-methylcytosine content in human colonic neoplasia. , 1988, Cancer research.
[3] Rui Luo,et al. Is My Network Module Preserved and Reproducible? , 2011, PLoS Comput. Biol..
[4] Anthony P. Fejes,et al. Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding. , 2008, Genome research.
[5] K. Zhao,et al. Methylation of Histone H3 on Lysine 79 Associates with a Group of Replication Origins and Helps Limit DNA Replication Once per Cell Cycle , 2013, PLoS genetics.
[6] Lisa L. Smith,et al. Epigenetic Profiling in Chronic Lymphocytic Leukemia Reveals Novel Methylation Targets , 2004, Cancer Research.
[7] Cole Trapnell,et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. , 2010, Nature biotechnology.
[8] Timothy J. Durham,et al. "Systematic" , 1966, Comput. J..
[9] John Calvin Reed,et al. bcl-2 gene hypomethylation and high-level expression in B-cell chronic lymphocytic leukemia. , 1993, Blood.
[10] Robert Gentleman,et al. Using GOstats to test gene lists for GO term association , 2007, Bioinform..
[11] L. Alhonen,et al. Genomic hypomethylation in human chronic lymphocytic leukemia. , 1992, Blood.
[12] Mikhail G. Dozmorov,et al. GenomeRunner: automating genome exploration , 2012, Bioinform..
[13] Peter W. Laird,et al. DNA Hypomethylation and Ovarian Cancer Biology , 2004, Cancer Research.
[14] A. Giuliano,et al. Global DNA hypomethylation increases progressively in cervical dysplasia and carcinoma , 1994, Cancer.
[15] Jiangwen Zhang,et al. Genome-wide lineage-specific transcriptional networks underscore Ikaros-dependent lymphoid priming in hematopoietic stem cells. , 2009, Immunity.
[16] L. Alhonen,et al. Hypomethylation of ornithine decarboxylase gene and erb-A1 oncogene in human chronic lymphatic leukemia. , 1988, Blood.
[17] Hanna Göransson,et al. Differential genome-wide array-based methylation profiles in prognostic subsets of chronic lymphocytic leukemia. , 2010, Blood.
[18] Tsviya Olender,et al. GeneDecks: paralog hunting and gene-set distillation with GeneCards annotation. , 2009, Omics : a journal of integrative biology.
[19] Wendy A Bickmore,et al. Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of Polycomb target genes , 2013, Genome Biology.
[20] Steve Horvath,et al. WGCNA: an R package for weighted correlation network analysis , 2008, BMC Bioinformatics.
[21] A. Feinberg,et al. Hypomethylation distinguishes genes of some human cancers from their normal counterparts , 1983, Nature.
[22] J. S. Rao,et al. Demethylation-linked activation of urokinase plasminogen activator is involved in progression of prostate cancer. , 2007, Cancer research.
[23] C. Glass,et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. , 2010, Molecular cell.
[24] M. Ehrlich,et al. Satellite DNA hypomethylation vs. overall genomic hypomethylation in ovarian epithelial tumors of different malignant potential. , 1999, Mutation research.
[25] David G Hendrickson,et al. Differential analysis of gene regulation at transcript resolution with RNA-seq , 2012, Nature Biotechnology.
[26] S. Vandenberg,et al. Genome-wide hypomethylation in human glioblastomas associated with specific copy number alteration, methylenetetrahydrofolate reductase allele status, and increased proliferation. , 2006, Cancer research.
[27] Thierry Boon,et al. DNA Methylation Is the Primary Silencing Mechanism for a Set of Germ Line- and Tumor-Specific Genes with a CpG-Rich Promoter , 1999, Molecular and Cellular Biology.
[28] V. Speights,et al. Global hypomethylation is common in prostate cancer cells: a quantitative predictor for clinical outcome? , 2005, Cancer genetics and cytogenetics.
[29] D. Weisenburger,et al. Downregulation of Death-Associated Protein Kinase 1 (DAPK1) in Chronic Lymphocytic Leukemia , 2007, Cell.
[30] M. Grever,et al. TWIST2 demonstrates differential methylation in immunoglobulin variable heavy chain mutated and unmutated chronic lymphocytic leukemia. , 2005, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.
[31] M. Widschwendter,et al. DNA hypomethylation is prevalent even in low-grade breast cancers , 2004, Cancer biology & therapy.
[32] J. Byrd,et al. CpG island methylation and expression of the secreted frizzled-related protein gene family in chronic lymphocytic leukemia. , 2006, Cancer research.
[33] Alfonso Valencia,et al. Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia , 2012, Nature Genetics.
[34] William Stafford Noble,et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project , 2007, Nature.
[35] Ramin Massoumi,et al. Cyld Inhibits Tumor Cell Proliferation by Blocking Bcl-3-Dependent NF-κB Signaling , 2006, Cell.
[36] Francine E. Garrett-Bakelman,et al. methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles , 2012, Genome Biology.
[37] Jing-Dong J Han,et al. Evolution of Alu elements toward enhancers. , 2014, Cell reports.
[38] Emili Montserrat,et al. ZAP-70 expression as a surrogate for immunoglobulin-variable-region mutations in chronic lymphocytic leukemia. , 2003, The New England journal of medicine.
[39] P. Laird,et al. Hypomethylation and hypermethylation of DNA in Wilms tumors , 2002, Oncogene.
[40] Felix Krueger,et al. Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications , 2011, Bioinform..
[41] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[42] N. Chiorazzi,et al. Ig V gene mutation status and CD38 expression as novel prognostic indicators in chronic lymphocytic leukemia. , 1999, Blood.
[43] Hengbin Wang,et al. Role of Histone H3 Lysine 27 Methylation in Polycomb-Group Silencing , 2002, Science.
[44] M. Yano,et al. Human Werner helicase interacting protein 1 (WRNIP1) functions as a novel modulator for DNA polymerase δ , 2004, Genes to cells : devoted to molecular & cellular mechanisms.
[45] S. S. Ajay,et al. Genome-wide DNA methylation profiles in hematopoietic stem and progenitor cells reveal overrepresentation of ETS transcription factor binding sites , 2012, Genome research.
[46] Guillaume J. Filion,et al. A Family of Human Zinc Finger Proteins That Bind Methylated DNA and Repress Transcription , 2006, Molecular and Cellular Biology.
[47] Meng Li,et al. Integrated analysis of DNA methylation and gene expression reveals specific signaling pathways associated with platinum resistance in ovarian cancer , 2009, BMC Medical Genomics.
[48] N. Chiorazzi,et al. B cell chronic lymphocytic leukemia: lessons learned from studies of the B cell antigen receptor. , 2003, Annual review of immunology.
[49] Derek A. West,et al. Silencing of the inhibitor of DNA binding protein 4 (ID4) contributes to the pathogenesis of mouse and human CLL. , 2011, Blood.
[50] G. Nolan,et al. The candidate proto-oncogene bcl-3 encodes a transcriptional coactivator that activates through NF-kappa B p50 homodimers. , 1993, Genes & development.
[51] L. Vives,et al. Genome-wide tracking of unmethylated DNA Alu repeats in normal and cancer cells , 2007, Nucleic acids research.
[52] D. Reinberg,et al. Processing the H3K36me3 signature , 2009, Nature Genetics.
[53] Y. Liaw,et al. Genome-wide hypomethylation in hepatocellular carcinogenesis. , 2001, Cancer research.
[54] M. Szyf,et al. Pharmacological inhibition of DNA methylation induces proinvasive and prometastatic genes in vitro and in vivo. , 2008, Neoplasia.
[55] Jun Qin,et al. Purification and functional characterization of the human N‐CoR complex: the roles of HDAC3, TBL1 and TBLR1 , 2003, The EMBO journal.
[56] O. Galm,et al. CpG island methylation patterns in chronic lymphocytic leukemia , 2009, Leukemia & lymphoma.
[57] David F. Kashatus,et al. Expression of the Bcl-3 proto-oncogene suppresses p53 activation. , 2006, Genes & development.
[58] Susumu Goto,et al. KEGG for representation and analysis of molecular networks involving diseases and drugs , 2009, Nucleic Acids Res..
[59] T J Hamblin,et al. Unmutated Ig V(H) genes are associated with a more aggressive form of chronic lymphocytic leukemia. , 1999, Blood.
[60] R. Hazan,et al. Cadherin Switch in Tumor Progression , 2004, Annals of the New York Academy of Sciences.
[61] J. Hagman,et al. B lymphocyte lineage specification, commitment and epigenetic control of transcription by early B cell factor 1. , 2012, Current topics in microbiology and immunology.
[62] David E. Muench,et al. c-Myc and Cancer Metabolism , 2012, Clinical Cancer Research.
[63] J. Gribben. How I treat CLL up front. , 2010, Blood.