Genome-wide association of early-onset myocardial infarction with common single nucleotide polymorphisms, common copy number variants, and rare copy number variants

controls. The design called for any variant with P 1% frequency) for association with MI; none met the prespecified threshold for replication testing (P 65 years old, 5-10% of new MIs occur in younger patients and these events are associated with substantially greater heritability 5,6 . Thus, early-onset MI is a promising phenotype for genetic mapping. Genome-wide association studies (GWASs) of common SNPs have been reported for MI and coronary artery disease 1-3,7 , with each study finding common SNPs on chromosome 9p21.3 associated with MI or coronary artery disease. In addition to 9p21.3, these papers proposed at least eight other loci as harboring SNPs associated with coronary artery disease. Some of these loci await definitive replication, but even if all were valid they would explain a small fraction of the risk of MI.

[1]  Joshua M. Korn,et al.  Integrated detection and population-genetic analysis of SNPs and copy number variation , 2008, Nature Genetics.

[2]  Joshua M. Korn,et al.  Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs , 2008, Nature Genetics.

[3]  Thomas Illig,et al.  FADS genotypes and desaturase activity estimated by the ratio of arachidonic acid to linoleic acid are associated with inflammation and coronary artery disease. , 2008, The American journal of clinical nutrition.

[4]  Thomas W. Mühleisen,et al.  Large recurrent microdeletions associated with schizophrenia , 2008, Nature.

[5]  Joseph A. Gogos,et al.  Strong association of de novo copy number mutations with sporadic schizophrenia , 2008, Nature Genetics.

[6]  M. Daly,et al.  Estimation of the multiple testing burden for genomewide association studies of nearly all common variants , 2008, Genetic epidemiology.

[7]  Ludwig A Hothorn,et al.  Repeated Replication and a Prospective Meta-Analysis of the Association Between Chromosome 9 p 21 . 3 and Coronary Artery Disease , 2008 .

[8]  M. McCarthy,et al.  Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes , 2008, Nature Genetics.

[9]  Joshua M. Korn,et al.  Association between microdeletion and microduplication at 16p11.2 and autism. , 2008, The New England journal of medicine.

[10]  R. Collins,et al.  Newly identified loci that influence lipid concentrations and risk of coronary artery disease , 2008, Nature Genetics.

[11]  F. Kee,et al.  Genetic variants of Complement factor H gene are not associated with premature coronary heart disease: a family-based study in the Irish population , 2007, BMC Medical Genetics.

[12]  C. Gieger,et al.  Genomewide association analysis of coronary artery disease. , 2007, The New England journal of medicine.

[13]  A. Gylfason,et al.  A Common Variant on Chromosome 9p21 Affects the Risk of Myocardial Infarction , 2007, Science.

[14]  Jonathan C. Cohen,et al.  Sequence variations in PCSK9, low LDL, and protection against coronary heart disease. , 2006, The New England journal of medicine.

[15]  L. Feuk,et al.  Detection of large-scale variation in the human genome , 2004, Nature Genetics.

[16]  Kenny Q. Ye,et al.  Large-Scale Copy Number Polymorphism in the Human Genome , 2004, Science.

[17]  P. Greengard,et al.  Phactrs 1-4: A family of protein phosphatase 1 and actin regulatory proteins. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[18]  L. Spremulli,et al.  The Small Subunit of the Mammalian Mitochondrial Ribosome , 2001, The Journal of Biological Chemistry.

[19]  M. Keating,et al.  MiRP1 Forms IKr Potassium Channels with HERG and Is Associated with Cardiac Arrhythmia , 1999, Cell.

[20]  Gregory J. Hannon,et al.  pl5INK4B is a potentia| effector of TGF-β-induced cell cycle arrest , 1994, Nature.

[21]  A. Yamauchi,et al.  Cloning of the cDNa for a Na+/myo-inositol cotransporter, a hypertonicity stress protein. , 1992, The Journal of biological chemistry.

[22]  A. Rissanen Familial occurrence of coronary heart disease: effect of age at diagnosis. , 1979, The American journal of cardiology.