Protein surface charges and Ca2+ binding to individual sites in calbindin D9k: stopped-flow studies.

The kinetics of calcium dissociation from two groups of site-specific mutants of calbindin D9k--a protein in the calmodulin superfamily with two Ca2+ sites and a tertiary structure closely similar to that of the globular domains of troponin C and calmodulin--have been studied by stopped-flow kinetic methods, using the fluorescent calcium chelator Quin 2, and by 43Ca NMR methods. The first group of mutants comprises all possible single, double, and triple neutralizations of three particular carboxylate groups (Glu-17, Asp-19, and Glu-26) that are located on the surface of the protein. These carboxylates are close to the two EF-hand calcium binding sites, but are not directly liganded to the Ca2+ ions. Conservative modification of these negative carboxylate side chains by conversion to the corresponding amides results in a marked reduction in the Ca2+ binding constants for both sites, as recently reported [Linse et al. (1988) Nature 335, 651-652]. The stopped-flow kinetic results show that this reduction in Ca2+ affinity derives primarily from a reduction in the Ca2+ association rate constant, kon. The estimated maximum value of the association rate constant (kon(max) for Ca2+ binding to the wild-type protein is ca. 10(9) M-1 s-1. In contrast, for the mutant protein with three charges neutralized the maximum association rate constant is estimated to be only 2 X 10(7) M-1 s-1.(ABSTRACT TRUNCATED AT 250 WORDS)

[1]  D. Gorenstein,et al.  NMR structural refinement of an extrahelical adenosine tridecamer d(CGCAGAATTCGCG)2 via a hybrid relaxation matrix procedure. , 1990, Biochemistry.

[2]  J. Knowles Tinkering with enzymes: what are we learning? , 1987, Science.

[3]  R. Kretsinger,et al.  Carp muscle calcium-binding protein. II. Structure determination and general description. , 1973, The Journal of biological chemistry.

[4]  Alan R. Fersht,et al.  Tailoring the pH dependence of enzyme catalysis using protein engineering , 1985, Nature.

[5]  T. Grundström,et al.  The role of protein surface charges in ion binding , 1988, Nature.

[6]  Robert L. Baldwin,et al.  Tests of the helix dipole model for stabilization of α-helices , 1987, Nature.

[7]  R. MacKinnon,et al.  Role of surface electrostatics in the operation of a high-conductance calcium-activated potassium channel , 1989 .

[8]  T. Grundström,et al.  Structure-function relationships in EF-hand Ca2+-binding proteins. Protein engineering and biophysical studies of calbindin D9k. , 1987, Biochemistry.

[9]  T. Grundström,et al.  Expression of bovine intestinal calcium binding protein from a synthetic gene in Escherichia coli and characterization of the product. , 1986, Biochemistry.

[10]  Alan R. Fersht,et al.  Stabilization of protein structure by interaction of α-helix dipole with a charged side chain , 1988, Nature.

[11]  M. Okamura,et al.  Role of specific lysine residues in binding cytochrome c2 to the Rhodobacter sphaeroides reaction center in optimal orientation for rapid electron transfer. , 1989, Biochemistry.

[12]  M. Tsai,et al.  Is the binding of magnesium (II) to calmodulin significant? An investigation by magnesium-25 nuclear magnetic resonance. , 1987, Biochemistry.

[13]  H. White Kinetic mechanism of calcium binding to whiting parvalbumin. , 1988, Biochemistry.

[14]  H. Vogel,et al.  Site-site interactions in EF-hand calcium-binding proteins. Laser-excited europium luminescence studies of 9-kDa calbindin, the pig intestinal calcium-binding protein. , 1988, European journal of biochemistry.

[15]  W. Chazin,et al.  Identification of an isoaspartyl linkage formed upon deamidation of bovine calbindin D9k and structural characterization by 2D 1H NMR. , 1989, Biochemistry.

[16]  M. Gittelman,et al.  Long-range electrostatic interactions can influence the folding, stability, and cooperativity of dihydrofolate reductase. , 1989, Biochemistry.

[17]  T. A. Craig,et al.  Computational and site‐specific mutagenesis analyses of the asymmetric charge distribution on calmodulin , 1989, Proteins.

[18]  K. Johnson,et al.  Stopped-flow kinetic studies of metal ion dissociation or exchange in a tryptophan-containing parvalbumin. , 1985, Biochemistry.

[19]  Brian W. Matthews,et al.  Hydrophobic stabilization in T4 lysozyme determined directly by multiple substitutions of Ile 3 , 1988, Nature.

[20]  T. Grundström,et al.  Kinetics of calcium binding to calbindin mutants. , 1988, European journal of biochemistry.

[21]  S. Martin,et al.  Kinetics of calcium dissociation from calmodulin and its tryptic fragments. A stopped-flow fluorescence study using Quin 2 reveals a two-domain structure. , 1985, European journal of biochemistry.

[22]  R. Kretsinger Calcium coordination and the calmodulin fold: divergent versus convergent evolution. , 1987, Cold Spring Harbor symposia on quantitative biology.

[23]  W V Shaw,et al.  Protein engineering. The design, synthesis and characterization of factitious proteins. , 1987, The Biochemical journal.

[24]  K. Moffat,et al.  The refined structure of vitamin D-dependent calcium-binding protein from bovine intestine. Molecular details, ion binding, and implications for the structure of other calcium-binding proteins. , 1986, The Journal of biological chemistry.

[25]  A. Fersht,et al.  Contribution of hydrophobic interactions to protein stability , 1988, Nature.

[26]  H. Vogel,et al.  Structural differences in the two calcium binding sites of the porcine intestinal calcium binding protein: a multinuclear NMR study. , 1985, Biochemistry.

[27]  E. Leberer,et al.  Functional consequences of glutamate, aspartate, glutamine, and asparagine mutations in the stalk sector of the Ca2+-ATPase of sarcoplasmic reticulum. , 1989, The Journal of biological chemistry.

[28]  T. Grundström,et al.  Effect of amino acid substitutions and deletions on the thermal stability, the pH stability and unfolding by urea of bovine calbindin D9k. , 1988, European journal of biochemistry.