Multiphase flow models of biogels from crawling cells to bacterial biofilms
暂无分享,去创建一个
N G Cogan | Robert D Guy | N. Cogan | R. Guy | N. G. Cogan
[1] J. Costerton. Cystic fibrosis pathogenesis and the role of biofilms in persistent infection. , 2001, Trends in microbiology.
[2] Taylor,et al. In vitro models of tail contraction and cytoplasmic streaming in amoeboid cells , 1993, The Journal of cell biology.
[3] E. Lauga,et al. Flapping motion and force generation in a viscoelastic fluid. , 2008, Physical review. E, Statistical, nonlinear, and soft matter physics.
[4] S. Takagi,et al. Locomotive mechanism of Physarum plasmodia based on spatiotemporal analysis of protoplasmic streaming. , 2008, Biophysical journal.
[5] H. Eberl,et al. Exposure of biofilms to slow flow fields: the convective contribution to growth and disinfection. , 2008, Journal of theoretical biology.
[6] Helen M Byrne,et al. A mechanical model of tumor encapsulation and transcapsular spread. , 2002, Mathematical biosciences.
[7] Jacques Prost,et al. Active gels as a description of the actin‐myosin cytoskeleton , 2009, HFSP journal.
[8] F. MacKintosh,et al. Nonequilibrium mechanics and dynamics of motor-activated gels. , 2007, Physical review letters.
[9] L Mahadevan,et al. Life and times of a cellular bleb. , 2008, Biophysical journal.
[10] W M Lai,et al. Fluid transport and mechanical properties of articular cartilage: a review. , 1984, Journal of biomechanics.
[11] Joseph Teran,et al. Peristaltic pumping and irreversibility of a Stokesian viscoelastic fluid , 2008 .
[12] J. Costerton,et al. Bacterial biofilms in nature and disease. , 1987, Annual review of microbiology.
[13] N. Kamiya. Protoplasmic Streaming , 1959, Protoplasmatologia Cell Biology Monographs.
[14] Julie A. Theriot,et al. Intracellular fluid flow in rapidly moving cells , 2009, Nature Cell Biology.
[15] Qi Wang,et al. PHASE-FIELD MODELS FOR BIOFILMS. I. THEORY AND 1-D SIMULATIONS ∗ , 2008 .
[16] Marc Herant,et al. The mechanics of neutrophils: synthetic modeling of three experiments. , 2003, Biophysical journal.
[17] Robert L. Spilker,et al. Formulation and evaluation of a finite element model for the biphasic model of hydrated soft tissues , 1990 .
[18] M. Hamilton,et al. Resilience of planktonic and biofilm cultures to supercritical CO2 , 2008 .
[19] P. Stewart,et al. Evidence of bacterial adaptation to monochloramine in Pseudomonas aeruginosa biofilms and evaluation of biocide action model. , 1997, Biotechnology and bioengineering.
[20] F. Harlow,et al. Cell motion, contractile networks, and the physics of interpenetrating reactive flow. , 1986, Biophysical journal.
[21] M. Dembo,et al. On the mechanics of the first cleavage division of the sea urchin egg. , 1997, Experimental cell research.
[22] Tianyu Zhang,et al. Phase-Field Models for Biofilms II. 2-D Numerical Simulations of Biofilm-Flow Interaction , 2008 .
[23] Helen M. Byrne,et al. Modelling the response of spatially structured tumours to chemotherapy: Drug kinetics , 2006, Math. Comput. Model..
[24] Wolfgang Alt,et al. Nonlinear Hyperbolic Systems of Generalized Navier-Stokes Type for Interactive Motion in Biology , 2003 .
[25] N G Cogan,et al. Two-Fluid Model of Biofilm Disinfection , 2008, Bulletin of mathematical biology.
[26] Curtiss,et al. Dynamics of Polymeric Liquids , .
[27] G. G. Stokes. "J." , 1890, The New Yale Book of Quotations.
[28] C. Petrie. Dynamics of polymeric liquids. Volume 1. Fluid mechanics (2nd ed) : R.B. Bird, R.C. Armstrong and O. Hassager, Wiley-Interscience, New York, NY, 1987, 649 + xxi pages, ISBN 0-471-80245-X (V.1), price US$ 69.95 , 1988 .
[29] W Gujer,et al. A multispecies biofilm model , 1986, Biotechnology and bioengineering.
[30] Eric Lauga,et al. Propulsion in a viscoelastic fluid , 2007 .
[31] K. Magnusson,et al. Neutrophil leukocyte motility requires directed water influx , 2002, Journal of leukocyte biology.
[32] H. C. Öttinger,et al. Calculation of viscoelastic flow using molecular models: the connffessit approach , 1993 .
[33] J. M. Oliver,et al. Thin-film theories for two-phase reactive flow models of active cell motion. , 2005, Mathematical medicine and biology : a journal of the IMA.
[34] A. Verkman,et al. Increased migration and metastatic potential of tumor cells expressing aquaporin water channels , 2006, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[35] Michael Sixt,et al. Mechanical modes of 'amoeboid' cell migration. , 2009, Current opinion in cell biology.
[36] Thomas R Powers,et al. Theory of swimming filaments in viscoelastic media. , 2007, Physical review letters.
[37] D. Lauffenburger,et al. Cell Migration: A Physically Integrated Molecular Process , 1996, Cell.
[38] I. Sutherland. Biofilm exopolysaccharides: a strong and sticky framework. , 2001, Microbiology.
[39] Isaac Klapper,et al. Finger Formation in Biofilm Layers , 2002, SIAM J. Appl. Math..
[40] Helen M Byrne,et al. A multiphase model describing vascular tumour growth , 2003, Bulletin of mathematical biology.
[41] P. Stewart,et al. Theoretical aspects of antibiotic diffusion into microbial biofilms , 1996, Antimicrobial agents and chemotherapy.
[42] Alex Mogilner,et al. Multiscale Two-Dimensional Modeling of a Motile Simple-Shaped Cell , 2005, Multiscale Model. Simul..
[43] D. Drew,et al. Theory of Multicomponent Fluids , 1998 .
[44] N. Allen,et al. Cytoplasmic streaming in amoeboid movement. , 1978, Annual review of biophysics and bioengineering.
[45] M. Dembo,et al. Mechanics and control of the cytoskeleton in Amoeba proteus. , 1989, Biophysical journal.
[46] Cory J. Rupp,et al. Viscoelastic fluid description of bacterial biofilm material properties. , 2002, Biotechnology and bioengineering.
[47] Peter Friedl,et al. Compensation mechanism in tumor cell migration , 2003, The Journal of cell biology.
[48] J. M. Oliver,et al. Thin-film modelling of poroviscous free surface flows , 2005, European Journal of Applied Mathematics.
[49] G. Fredrickson. The theory of polymer dynamics , 1996 .
[50] P. Macklem,et al. Intracellular pressure is a motive force for cell motion in Amoeba proteus. , 1996, Cell motility and the cytoskeleton.
[51] N G Cogan,et al. Modeling physiological resistance in bacterial biofilms , 2005, Bulletin of mathematical biology.
[52] N. Cogan. HYBRID NUMERICAL TREATMENT OF TWO-FLUID PROBLEMS WITH PASSIVE INTERFACES , 2007 .
[53] M. Marchetti,et al. Bridging the microscopic and the hydrodynamic in active filament solutions , 2004, cond-mat/0406276.
[54] O. Fackler,et al. Cell motility through plasma membrane blebbing , 2008, The Journal of cell biology.
[55] George Oster,et al. The hydration dynamics of polyelectrolyte gels with applications to cell motility and drug delivery , 2004, European Biophysics Journal.
[56] W. G. Characklis,et al. Dynamics of biofilm processes: methods , 1982 .
[57] T. Mitchison,et al. Actin-Based Cell Motility and Cell Locomotion , 1996, Cell.
[58] R T Tranquillo,et al. An anisotropic biphasic theory of tissue-equivalent mechanics: the interplay among cell traction, fibrillar network deformation, fibril alignment, and cell contact guidance. , 1997, Journal of biomechanical engineering.
[59] Cory J. Rupp,et al. Commonality of elastic relaxation times in biofilms. , 2004, Physical review letters.
[60] Guillaume Charras,et al. Blebs lead the way: how to migrate without lamellipodia , 2008, Nature Reviews Molecular Cell Biology.
[61] Lee A. Segel,et al. Averaged Equations for Two-Phase Flows , 1971 .
[62] W Alt,et al. Cytoplasm dynamics and cell motion: two-phase flow models. , 1999, Mathematical biosciences.
[63] Gerard A Ateshian,et al. A mixture theory analysis for passive transport in osmotic loading of cells. , 2006, Journal of biomechanics.
[64] R. Sutherland. Cell and environment interactions in tumor microregions: the multicell spheroid model. , 1988, Science.
[65] M. Ishii,et al. Thermo-Fluid Dynamics of Two-Phase Flow , 2007 .
[66] F. MacKintosh,et al. The mechanics and fluctuation spectrum of active gels. , 2009, The journal of physical chemistry. B.
[67] P. Stewart,et al. Biofilm penetration and disinfection efficacy of alkaline hypochlorite and chlorosulfamates , 2001, Journal of applied microbiology.
[68] Greg Lemon,et al. Mathematical modelling of engineered tissue growth using a multiphase porous flow mixture theory , 2006, Journal of mathematical biology.
[69] W. Mohler,et al. Depolymerization-driven flow in nematode spermatozoa relates crawling speed to size and shape. , 2008, Biophysical journal.
[70] I. Klapper,et al. Description of mechanical response including detachment using a novel particle model of biofilm/flow interaction. , 2007, Water science and technology : a journal of the International Association on Water Pollution Research.
[71] S. Molin,et al. Alginate Overproduction Affects Pseudomonas aeruginosa Biofilm Structure and Function , 2001, Journal of bacteriology.
[72] Robert L Spilker,et al. A Lagrange multiplier mixed finite element formulation for three-dimensional contact of biphasic tissues. , 2007, Journal of biomechanical engineering.
[73] J. Keener,et al. The role of the biofilm matrix in structural development. , 2004, Mathematical medicine and biology : a journal of the IMA.
[74] R. Skalak,et al. Macro- and Microscopic Fluid Transport in Living Tissues: Application to Solid Tumors , 1997 .
[75] James Monypenny,et al. Rapid Actin Transport During Cell Protrusion , 2003, Science.
[76] J J Heijnen,et al. Mathematical modeling of biofilm structure with a hybrid differential-discrete cellular automaton approach. , 1998, Biotechnology and bioengineering.
[77] Qi Wang,et al. Phase Field Models for Biofilms. I. Theory and One-Dimensional Simulations , 2008, SIAM J. Appl. Math..
[78] Salman S Rogers,et al. Intracellular microrheology of motile Amoeba proteus. , 2007, Biophysical journal.
[79] Grady B. Wright,et al. An Efficient and Robust Method for Simulating Two-Phase Gel Dynamics , 2008, SIAM J. Sci. Comput..
[80] J. Kreft,et al. Biofilms promote altruism. , 2004, Microbiology.
[81] Kenneth M. Yamada,et al. Cell migration in 3D matrix. , 2005, Current opinion in cell biology.
[82] Timothy J Mitchison,et al. Single-Molecule Speckle Analysis of Actin Filament Turnover in Lamellipodia , 2002, Science.
[83] H. Byrne,et al. The role of cell-cell interactions in a two-phase model for avascular tumour growth , 2002, Journal of mathematical biology.
[84] F. Harlow,et al. Numerical studies of unreactive contractile networks. , 1986, Biophysical journal.
[85] Shay Gueron,et al. Computational modeling in biological fluid dynamics , 2001 .
[86] L. Preziosi,et al. Modelling Solid Tumor Growth Using the Theory of Mixtures , 2001, Mathematical medicine and biology : a journal of the IMA.
[87] T D Pollard,et al. Molecular mechanisms controlling actin filament dynamics in nonmuscle cells. , 2000, Annual review of biophysics and biomolecular structure.
[88] L. Mahadevan,et al. Non-equilibration of hydrostatic pressure in blebbing cells , 2005, Nature.
[89] T. Jackson,et al. Multiphase mechanics of capsule formation in tumors. , 2002, Journal of biomechanical engineering.
[90] D. Davies,et al. Understanding biofilm resistance to antibacterial agents , 2003, Nature Reviews Drug Discovery.
[91] Wolfgang Alt,et al. Continuum model of cell adhesion and migration , 2009, Journal of mathematical biology.
[92] Andrzej GręObecki,et al. Membrane and Cytoskeleton Flow in Motile Cells with Emphasis on the Contribution of Free-Living Amoebae , 1994 .
[93] E. Hoiczyk,et al. How Myxobacteria Glide , 2002, Current Biology.
[94] M. Dembo. The mechanics of motility in dissociated cytoplasm. , 1986, Biophysical journal.
[95] I. Klapper,et al. Role of cohesion in the material description of biofilms. , 2006, Physical review. E, Statistical, nonlinear, and soft matter physics.
[96] J. Joanny,et al. Generic theory of active polar gels: a paradigm for cytoskeletal dynamics , 2004, The European physical journal. E, Soft matter.
[97] L Mahadevan,et al. Implications of a poroelastic cytoplasm for the dynamics of animal cell shape. , 2008, Seminars in cell & developmental biology.
[98] C. Wolgemuth. Collective swimming and the dynamics of bacterial turbulence. , 2008, Biophysical journal.