Distinct cerebellar foliation anomalies in a CHD7 haploinsufficient mouse model of CHARGE syndrome

Mutations in the gene encoding the ATP dependent chromatin‐remodeling factor, CHD7 are the major cause of CHARGE (Coloboma, Heart defects, Atresia of the choanae, Retarded growth and development, Genital‐urinary anomalies, and Ear defects) syndrome. Neurodevelopmental defects and a range of neurological signs have been identified in individuals with CHARGE syndrome, including developmental delay, lack of coordination, intellectual disability, and autistic traits. We previously identified cerebellar vermis hypoplasia and abnormal cerebellar foliation in individuals with CHARGE syndrome. Here, we report mild cerebellar hypoplasia and distinct cerebellar foliation anomalies in a Chd7 haploinsufficient mouse model. We describe specific alterations in the precise spatio‐temporal sequence of fissure formation during perinatal cerebellar development responsible for these foliation anomalies. The altered cerebellar foliation pattern in Chd7 haploinsufficient mice show some similarities to those reported in mice with altered Engrailed, Fgf8 or Zic1 gene expression and we propose that mutations or polymorphisms in these genes may modify the cerebellar phenotype in CHARGE syndrome. Our findings in a mouse model of CHARGE syndrome indicate that a careful analysis of cerebellar foliation may be warranted in patients with CHARGE syndrome, particularly in patients with cerebellar hypoplasia and developmental delay.

[1]  N. Heintz,et al.  Genetic mapping of the lurcher locus on mouse chromosome 6 using an intersubspecific backcross. , 1991, Genomics.

[2]  Roy V Sillitoe,et al.  Engrailed Homeobox Genes Regulate Establishment of the Cerebellar Afferent Circuit Map , 2010, The Journal of Neuroscience.

[3]  Andrew L. Janke,et al.  A segmentation protocol and MRI atlas of the C57BL/6J mouse neocortex , 2013, NeuroImage.

[4]  R. Kingston,et al.  Chromatin remodeling by the CHD7 protein is impaired by mutations that cause human developmental disorders , 2012, Epigenetics & Chromatin.

[5]  R. Gerlai Gene-targeting studies of mammalian behavior: is it the mutation or the background genotype? , 1996, Trends in Neurosciences.

[6]  K. Steel,et al.  Great vessel development requires biallelic expression of Chd7 and Tbx1 in pharyngeal ectoderm in mice. , 2009, The Journal of clinical investigation.

[7]  R. Mark Henkelman,et al.  Automated deformation analysis in the YAC128 Huntington disease mouse model , 2008, NeuroImage.

[8]  K. Mikoshiba,et al.  Zic2 Controls Cerebellar Development in Cooperation with Zic1 , 2002, The Journal of Neuroscience.

[9]  D. Reinberg,et al.  The chromatin remodeling factor CHD7 controls cerebellar development by regulating reelin expression , 2017, The Journal of clinical investigation.

[10]  J. Graham,et al.  An epidemiological analysis of CHARGE syndrome: Preliminary results from a Canadian study , 2005, American journal of medical genetics. Part A.

[11]  David T. W. Jones,et al.  Chd7 is indispensable for mammalian brain development through activation of a neuronal differentiation programme , 2017, Nature Communications.

[12]  Lindsay S. Cahill,et al.  Preparation of fixed mouse brains for MRI , 2012, NeuroImage.

[13]  Giacomo Cavalli,et al.  Trithorax group proteins: switching genes on and keeping them active , 2011, Nature Reviews Molecular Cell Biology.

[14]  Jeremy D. Schmahmann,et al.  Functional topography in the human cerebellum: A meta-analysis of neuroimaging studies , 2009, NeuroImage.

[15]  R. Mark Henkelman,et al.  Multiple developmental programs are altered by loss of Zic1 and Zic4 to cause Dandy-Walker malformation cerebellar pathogenesis , 2011, Development.

[16]  HighWire Press The journal of neuroscience : the official journal of the Society for Neuroscience. , 1981 .

[17]  Bba,et al.  CHARGE syndrome: the phenotypic spectrum of mutations in the CHD7 gene , 2005, Journal of Medical Genetics.

[18]  M. Ross,et al.  Meander tail reveals a discrete developmental unit in the mouse cerebellum. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[19]  Jeremy D. Schmahmann,et al.  Functional topography of the cerebellum for motor and cognitive tasks: An fMRI study , 2012, NeuroImage.

[20]  J. Weissenbach,et al.  Phenotypic spectrum of CHARGE syndrome in fetuses with CHD7 truncating mutations correlates with expression during human development , 2005, Journal of Medical Genetics.

[21]  Anamaria Sudarov,et al.  The Engrailed homeobox genes determine the different foliation patterns in the vermis and hemispheres of the mammalian cerebellum , 2010, Development.

[22]  R Mark Henkelman,et al.  MRI phenotyping of genetically altered mice. , 2011, Methods in molecular biology.

[23]  T. Leigh Spencer Noakes,et al.  Partitioning k‐space for cylindrical three‐dimensional rapid acquisition with relaxation enhancement imaging in the mouse brain , 2017, NMR in biomedicine.

[24]  D. Reinberg,et al.  Deregulated FGF and homeotic gene expression underlies cerebellar vermis hypoplasia in CHARGE syndrome , 2013, eLife.

[25]  R. Mark Henkelman,et al.  Fast spin‐echo for multiple mouse magnetic resonance phenotyping , 2005, Magnetic resonance in medicine.

[26]  P. Huygen,et al.  Vestibular areflexia as a cause of delayed motor skill development in children with the CHARGE association. , 1997, International journal of pediatric otorhinolaryngology.

[27]  Catherine J. Stoodley,et al.  Evidence for topographic organization in the cerebellum of motor control versus cognitive and affective processing , 2010, Cortex.

[28]  R. Hofstra,et al.  CHD7 mutations and CHARGE syndrome: the clinical implications of an expanding phenotype , 2011, Journal of Medical Genetics.

[29]  P. Strick,et al.  Cerebellar Loops with Motor Cortex and Prefrontal Cortex of a Nonhuman Primate , 2003, The Journal of Neuroscience.

[30]  J. Graham,et al.  Central nervous system malformations in the CHARGE association. , 1990, American journal of medical genetics.

[31]  G. Crawford,et al.  Genomic distribution of CHD7 on chromatin tracks H3K4 methylation patterns. , 2009, Genome research.

[32]  Han G Brunner,et al.  Mutations in a new member of the chromodomain gene family cause CHARGE syndrome , 2004, Nature Genetics.

[33]  A. Joyner,et al.  Subtle cerebellar phenotype in mice homozygous for a targeted deletion of the En-2 homeobox. , 1991, Science.

[34]  Leif E. Peterson,et al.  Spectrum of CHD7 mutations in 110 individuals with CHARGE syndrome and genotype-phenotype correlation. , 2006, American journal of human genetics.

[35]  R Mark Henkelman,et al.  Anatomical phenotyping in the brain and skull of a mutant mouse by magnetic resonance imaging and computed tomography. , 2006, Physiological genomics.

[36]  Michael D. Wong,et al.  Variations in post-perfusion immersion fixation and storage alter MRI measurements of mouse brain morphometry , 2016, NeuroImage.

[37]  M. A. Basson,et al.  Fibroblast growth factor (FGF) gene expression in the developing cerebellum suggests multiple roles for FGF signaling during cerebellar morphogenesis and development , 2009, Developmental dynamics : an official publication of the American Association of Anatomists.

[38]  Dm Martin,et al.  Chromodomain proteins in development: lessons from CHARGE syndrome , 2010, Clinical genetics.

[39]  K. G. Coleman,et al.  Expression during embryogenesis of a mouse gene with sequence homology to the Drosophila engrailed gene , 1985, Cell.

[40]  Boris Lenhard,et al.  Sox2 cooperates with Chd7 to regulate genes that are mutated in human syndromes , 2011, Nature Genetics.

[41]  A. Joyner,et al.  Morphology, molecular codes, and circuitry produce the three-dimensional complexity of the cerebellum. , 2007, Annual review of cell and developmental biology.

[42]  A. Joyner,et al.  Engrailed Homeobox Genes Determine the Organization of Purkinje Cell Sagittal Stripe Gene Expression in the Adult Cerebellum , 2008, The Journal of Neuroscience.

[43]  Daniel H Turnbull,et al.  The engrailed homeobox genes are required in multiple cell lineages to coordinate sequential formation of fissures and growth of the cerebellum. , 2012, Developmental biology.

[44]  M. Inouye,et al.  Strain‐specific variations in the folial pattern of the mouse cerebellum , 1980, The Journal of comparative neurology.

[45]  M. Swertz,et al.  Mutation update on the CHD7 gene involved in CHARGE syndrome , 2012, Human mutation.

[46]  O. Larsell,et al.  The morphogenesis and adult pattern of the lobules and fissures of the cerebellum of the white rat , 1952, The Journal of comparative neurology.

[47]  L. Hoefsloot,et al.  Anosmia predicts hypogonadotropic hypogonadism in CHARGE syndrome. , 2011, The Journal of pediatrics.

[48]  Catherine J. Stoodley,et al.  Autism spectrum disorder and the cerebellum. , 2013, International review of neurobiology.

[49]  A. Verloes,et al.  PRACTICAL GENETICS In association with CHARGE syndrome : an update , 2007 .

[50]  M. Basson,et al.  Functional Insights into Chromatin Remodelling from Studies on CHARGE Syndrome , 2015, Trends in genetics : TIG.

[51]  P. Denise,et al.  Vestibular function in children with the CHARGE association. , 1999, Archives of otolaryngology--head & neck surgery.

[52]  A. Joyner,et al.  En-1 and En-2, two mouse genes with sequence homology to the Drosophila engrailed gene: expression during embryogenesis. , 1987, Genes & development.

[53]  Anamaria Sudarov,et al.  Cerebellum morphogenesis: the foliation pattern is orchestrated by multi-cellular anchoring centers , 2007, Neural Development.

[54]  Thomas E. Nichols,et al.  Thresholding of Statistical Maps in Functional Neuroimaging Using the False Discovery Rate , 2002, NeuroImage.

[55]  A. Joyner,et al.  Abnormal embryonic cerebellar development and patterning of postnatal foliation in two mouse Engrailed-2 mutants. , 1994, Development.

[56]  P. O’Farrell,et al.  The Drosophila developmental gene, engrailed, encodes a sequence-specific DNA binding activity , 1985, Nature.

[57]  William B Dobyns,et al.  A developmental and genetic classification for midbrain-hindbrain malformations. , 2009, Brain : a journal of neurology.

[58]  Lusy Handoko,et al.  CHD7 Targets Active Gene Enhancer Elements to Modulate ES Cell-Specific Gene Expression , 2010, PLoS genetics.

[59]  Thomas M. Keane,et al.  Mouse genomic variation and its effect on phenotypes and gene regulation , 2011, Nature.

[60]  A. Snik,et al.  Influence of hearing loss and cognitive abilities on language development in CHARGE Syndrome , 2016, American journal of medical genetics. Part A.

[61]  R. Mark Henkelman,et al.  Sexual dimorphism revealed in the structure of the mouse brain using three-dimensional magnetic resonance imaging , 2007, NeuroImage.

[62]  J. Millonig,et al.  En2 knockout mice display neurobehavioral and neurochemical alterations relevant to autism spectrum disorder , 2006, Brain Research.

[63]  R. Mark Henkelman,et al.  In vivo multiple‐mouse MRI at 7 Tesla , 2005, Magnetic resonance in medicine.

[64]  Donna M. Martin,et al.  CHD7 functions in the nucleolus as a positive regulator of ribosomal RNA biogenesis. , 2010, Human molecular genetics.

[65]  C. Fallet-Bianco,et al.  Antenatal spectrum of CHARGE syndrome in 40 fetuses with CHD7 mutations , 2012, Journal of Medical Genetics.

[66]  Jacob Ellegood,et al.  Genetic Effects on Cerebellar Structure Across Mouse Models of Autism Using a Magnetic Resonance Imaging Atlas , 2014, Autism research : official journal of the International Society for Autism Research.

[67]  A. Joyner,et al.  Genetic subdivision of the tectum and cerebellum into functionally related regions based on differential sensitivity to engrailed proteins , 2007, Development.

[68]  R. Mark Henkelman,et al.  High resolution three-dimensional brain atlas using an average magnetic resonance image of 40 adult C57Bl/6J mice , 2008, NeuroImage.

[69]  H. Brunner,et al.  Familial CHARGE syndrome and the CHD7 gene: A recurrent missense mutation, intrafamilial recurrence and variability , 2008, American journal of medical genetics. Part A.

[70]  R. Becker,et al.  Mild Ventriculomegaly, Mild Cerebellar Hypoplasia and Dysplastic Choroid Plexus as Early Prenatal Signs of CHARGE Association , 2001, Fetal Diagnosis and Therapy.

[71]  S. Lyonnet,et al.  Vestibular anomalies in CHARGE syndrome: investigations on and consequences for postural development , 2000, European Journal of Pediatrics.

[72]  A. Joyner,et al.  The duration of Fgf8 isthmic organizer expression is key to patterning different tectal-isthmo-cerebellum structures , 2009, Development.

[73]  J L Michel,et al.  CHARGE syndrome: report of 47 cases and review. , 1998, American journal of medical genetics.

[74]  M. Basson Epistatic interactions between Chd7 and Fgf8 during cerebellar development , 2014, Rare diseases.

[75]  A. Joyner,et al.  The level of sonic hedgehog signaling regulates the complexity of cerebellar foliation , 2006, Development.

[76]  R. Pagon,et al.  Coloboma, congenital heart disease, and choanal atresia with multiple anomalies: CHARGE association. , 1981, The Journal of pediatrics.