Hydroxylation of C–H bonds at carboxylate-bridged diiron centres

Nature uses carboxylate-bridged diiron centres at the active sites of enzymes that catalyse the selective hydroxylation of hydrocarbons to alcohols. The resting diiron(III) state of the hydroxylase component of soluble methane monooxygenase enzyme is converted by two-electron transfer from an NADH-requiring reductase into the active diiron(II) form, which subsequently reacts with O2 to generate a high-valent diiron(IV) oxo species (Q) that converts CH4 into CH3OH. In this step, C–H bond activation is achieved through a transition state having a linear C⋯H⋯O unit involving a bound methyl radical. Kinetic studies of the reaction of Q with substrates CH3X, where X=H, D, CH3, NO2, CN or OH, reveal two classes of reactivity depending upon whether binding to the enzyme or C–H bond activation is rate-limiting. Access of substrates to the carboxylate-bridged diiron active site in the hydroxylase (MMOH) occurs through a series of hydrophobic pockets. In the hydroxylase component of the closely related enzyme toluene/o-xylene monooxygenase (ToMOH), substrates enter through a wide channel in the α-subunit of the protein that tracks a course identical to that found in the structurally homologous MMOH. Synthetic models for the carboxylate-bridged diiron centres in MMOH and ToMOH have been prepared that reproduce the stoichiometry and key geometric and physical properties of the reduced and oxidized forms of the proteins. Reactions of the diiron(II) model complexes with dioxygen similarly generate reactive intermediates, including high-valent species capable not only of hydroxylating pendant C–H bonds but also of oxidizing phosphine and sulphide groups.

[1]  J D Lipscomb,et al.  Kinetics and activation thermodynamics of methane monooxygenase compound Q formation and reaction with substrates. , 2000, Biochemistry.

[2]  S. Lippard,et al.  Modeling dioxygen-activating centers in non-heme diiron enzymes: carboxylate shifts in diiron(II) complexes supported by sterically hindered carboxylate ligands. , 2002, Inorganic chemistry.

[3]  Stephen J. Lippard,et al.  Kinetic and spectroscopic characterization of intermediates and component interactions in reactions of methane monooxygenase from Methylococcus capsulatus (Bath) , 1995 .

[4]  S. Lippard,et al.  Structure of the Toluene/o-Xylene Monooxygenase Hydroxylase , 2004 .

[5]  P. Chardin Toward the Future , 1975 .

[6]  S. Lippard,et al.  Geometry of the soluble methane monooxygenase catalytic diiron center in two oxidation states. , 1995, Chemistry & biology.

[7]  G. Wagner,et al.  NMR structure of the flavin domain from soluble methane monooxygenase reductase from Methylococcus capsulatus (Bath). , 2004, Biochemistry.

[8]  S. Lippard,et al.  Synthetic models for non-heme carboxylate-bridged diiron metalloproteins: strategies and tactics. , 2004, Chemical reviews.

[9]  S. Lippard Chemical synthesis: The art of chemistry , 2002, Nature.

[10]  B. Fox,et al.  Spectroscopic Studies of the Coupled Binuclear Nonheme Iron Active-Site in the Fully Reduced Hydroxylase Component of Methane Monooxygenase - Comparison to Deoxy and Deoxy-Azide Hemerythrin (Vol 115, Pg 12409, 1993) , 1994 .

[11]  Stephen J. Lippard,et al.  Mechanistic studies of the reaction of reduced methane monooxygenase hydroxylase with dioxygen and substrates , 1999 .

[12]  S. Lippard,et al.  Synthesis and Characterization of Carboxylate-Rich Complexes Having the {Fe2(μ-OH)2(μ-O2CR)}3+ and {Fe2(μ-O)(μ-O2CR)}3+ Cores of O2-Dependent Diiron Enzymes , 2004 .

[13]  K J Walters,et al.  Structure of the soluble methane monooxygenase regulatory protein B. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[14]  A. Choi,et al.  Cationic Species Can Be Produced in Soluble Methane Monooxygenase-Catalyzed Hydroxylation Reactions; Radical Intermediates Are Not Formed , 1999 .

[15]  S. Lippard Oxo‐Bridged Polyiron Centers in Biology and Chemistry , 1988 .

[16]  J. Lipscomb,et al.  Unmasking of deuterium kinetic isotope effects on the methane monooxygenase compound Q reaction by site-directed mutagenesis of component B. , 2001, Journal of the American Chemical Society.

[17]  H. Eklund,et al.  X-ray crystal structure of benzoate 1,2-dioxygenase reductase from Acinetobacter sp. strain ADP1. , 2002, Journal of molecular biology.

[18]  G. Wagner,et al.  NMR structure of the [2Fe-2S] ferredoxin domain from soluble methane monooxygenase reductase and interaction with its hydroxylase. , 2002, Biochemistry.

[19]  S. Lippard,et al.  Synthesis, characterization, and dioxygen reactivity of tetracarboxylate-bridged Diiron(II) complexes with coordinated substrates. , 2003, Inorganic chemistry.

[20]  A. Tramontano,et al.  Evolution of Bacterial and Archaeal Multicomponent Monooxygenases , 2003, Journal of Molecular Evolution.

[21]  Stephen J. Lippard,et al.  Radical clock substrate probes and kinetic isotope effect studies of the hydroxylation of hydrocarbons by methane monooxygenase , 1993 .

[22]  R. Friesner,et al.  Dynamics of alkane hydroxylation at the non-heme diiron center in methane monooxygenase. , 2002, Journal of the American Chemical Society.

[23]  R. Friesner,et al.  Mechanistic studies on the hydroxylation of methane by methane monooxygenase. , 2003, Chemical reviews.

[24]  S. Lippard,et al.  Oxidation of sulfide, phosphine, and benzyl substrates tethered to N-donor pyridine ligands in carboxylate-bridged diiron(II) complexes. , 2004, Journal of the American Chemical Society.

[25]  N. Priestley,et al.  Tritiated Chiral Alkanes as Substrates for Soluble Methane Monooxygenase from Methylococcus capsulatus (Bath): Probes for the Mechanism of Hydroxylation , 1997 .

[26]  S. Lippard,et al.  Crystal structures of the soluble methane monooxygenase hydroxylase from Methylococcus capsulatus (Bath) demonstrating geometrical variability at the dinuclear iron active site. , 2001, Journal of the American Chemical Society.

[27]  S. Lippard,et al.  Functional mimic of dioxygen-activating centers in non-heme diiron enzymes: mechanistic implications of paramagnetic intermediates in the reactions between diiron(II) complexes and dioxygen. , 2002, Journal of the American Chemical Society.

[28]  S. Lippard,et al.  Xenon and halogenated alkanes track putative substrate binding cavities in the soluble methane monooxygenase hydroxylase. , 2001, Biochemistry.

[29]  S. Lippard,et al.  Synthesis and characterization of carboxylate-rich complexes having the [Fe2(mu-OH)2(mu-O2CR)]3+ and [Fe2(mu-O)(mu-O2CR)]3+ cores of O2-dependent diiron enzymes. , 2004, Journal of the American Chemical Society.

[30]  J. Lipscomb,et al.  Gating Effects of Component B on Oxygen Activation by the Methane Monooxygenase Hydroxylase Component (*) , 1995, The Journal of Biological Chemistry.

[31]  S. Lippard,et al.  Oxidative N-dealkylation of a carboxylate-bridged diiron(II) precursor complex by reaction with O2 affords the elusive [Fe2(mu-OH)2(mu-O2CR)](3+) core of soluble methane monooxygenase hydroxylase. , 2001, Journal of the American Chemical Society.

[32]  S. Lippard,et al.  Understanding the dioxygen reaction chemistry of diiron proteins through synthetic modeling studies , 2000 .

[33]  Thomas G. Spiro,et al.  Characterization of a Diiron(III) Peroxide Intermediate in the Reaction Cycle of Methane Monooxygenase Hydroxylase from Methylococcus capsulatus (Bath) , 1995 .

[34]  S. Lippard,et al.  X-ray crystal structure of alcohol products bound at the active site of soluble methane monooxygenase hydroxylase. , 2001, Journal of the American Chemical Society.

[35]  Thomas E Hanson,et al.  Methanotrophic bacteria. , 1996, Microbiological reviews.

[36]  R. Friesner,et al.  Reactions of methane monooxygenase intermediate Q with derivatized methanes. , 2002, Journal of the American Chemical Society.

[37]  Stephen J Lippard,et al.  Reactions of the peroxo intermediate of soluble methane monooxygenase hydroxylase with ethers. , 2005, Journal of the American Chemical Society.

[38]  S. Lippard,et al.  8.13 – Nonheme Di-iron Enzymes , 2003 .

[39]  N. Priestley,et al.  Cryptic stereospecificity of methane monooxygenase , 1992 .

[40]  R. Friesner,et al.  Hydroxylation of methane by non-heme diiron enzymes: molecular orbital analysis of C-H bond activation by reactive intermediate Q. , 2002, Journal of the American Chemical Society.

[41]  Stephen J. Lippard,et al.  Structural and Functional Models of the Dioxygen-Activating Centers of Non-Heme Diiron Enzymes Ribonucleotide Reductase and Soluble Methane Monooxygenase , 1998 .

[42]  J. Lipscomb,et al.  Transient intermediates of the methane monooxygenase catalytic cycle. , 1993, The Journal of biological chemistry.

[43]  J. G. Leahy,et al.  Evolution of the soluble diiron monooxygenases. , 2003, FEMS microbiology reviews.

[44]  Carsten Krebs,et al.  {Generation of a mixed-valent Fe(III)Fe(IV) form of intermediate Q in the reaction cycle of soluble methane monooxygenase, an analog of intermediate X in ribonucleotide reductase R2 assembly} , 1998 .

[45]  S. Lippard,et al.  Modeling the syn disposition of nitrogen donors at the active sites of carboxylate-bridged diiron enzymes. Enforcing dinuclearity and kinetic stability with a 1,2-diethynylbenzene-based ligand. , 2003, Inorganic chemistry.

[46]  M. J. Coon,et al.  Evaluation of Norcarane as a Probe for Radicals in Cytochrome P450- and Soluble Methane Monooxygenase-Catalyzed Hydroxylation Reactions [J. Am. Chem. Soc. 2002, 124, 6879−6886]. , 2006 .

[47]  S. Lippard,et al.  Component interactions in the soluble methane monooxygenase system from Methylococcus capsulatus (Bath). , 1999, Biochemistry.

[48]  Stephen J. Lippard,et al.  Crystal structure of a bacterial non-haem iron hydroxylase that catalyses the biological oxidation of methane , 1993, Nature.

[49]  J. Groves,et al.  Intermediate Q from soluble methane monooxygenase hydroxylates the mechanistic substrate probe norcarane: evidence for a stepwise reaction. , 2001, Journal of the American Chemical Society.

[50]  J. Baldwin,et al.  Rational reprogramming of the R2 subunit of Escherichia coli ribonucleotide reductase into a self-hydroxylating monooxygenase. , 2001, Journal of the American Chemical Society.

[51]  J D Lipscomb,et al.  An Fe2IVO2 Diamond Core Structure for the Key Intermediate Q of Methane Monooxygenase , 1997, Science.

[52]  R. Friesner,et al.  Substrate hydroxylation in methane monooxygenase: quantitative modeling via mixed quantum mechanics/molecular mechanics techniques. , 2005, Journal of the American Chemical Society.

[53]  S. Lippard,et al.  Stopped-flow Fourier transform infrared spectroscopy of nitromethane oxidation by the diiron(IV) intermediate of methane monooxygenase. , 2003, Journal of the American Chemical Society.

[54]  P. Siegbahn,et al.  O-O bond cleavage and alkane hydroxylation in methane monooxygenase , 2000, JBIC Journal of Biological Inorganic Chemistry.

[55]  L. Que,et al.  Sterically Hindered Benzoates: A Synthetic Strategy for Modeling Dioxygen Activation at Diiron Active Sites in Proteins. , 2002 .