Assessing the gain of biological data integration in gene networks inference

[1]  Yufei Huang,et al.  Selected articles from the IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS'2011) , 2012, BMC Genomics.

[2]  Fabricio M. Lopes,et al.  Assessing the gain of biological data integration in gene networks inference , 2012, BMC Genomics.

[3]  Ronaldo Fumio Hashimoto,et al.  Improvement of GNs inference through biological data integration , 2011, 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS).

[4]  Roberto Marcondes Cesar Junior,et al.  Gene Expression Complex Networks: Synthesis, Identification, and Analysis , 2011, J. Comput. Biol..

[5]  Julia V. Ponomarenko,et al.  Semantic integration of data on transcriptional regulation , 2010, Bioinform..

[6]  Zbynek Bozdech,et al.  Transcriptional profiling of growth perturbations of the human malaria parasite Plasmodium falciparum , 2010, Nature Biotechnology.

[7]  Susumu Goto,et al.  KEGG for representation and analysis of molecular networks involving diseases and drugs , 2009, Nucleic Acids Res..

[8]  Sebastian Proost,et al.  Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression , 2009, BMC Genomics.

[9]  Michael Hecker,et al.  Gene regulatory network inference: Data integration in dynamic models - A review , 2009, Biosyst..

[10]  Sanghamitra Bandyopadhyay,et al.  Combining Multisource Information Through Functional-Annotation-Based Weighting: Gene Function Prediction in Yeast , 2009, IEEE Transactions on Biomedical Engineering.

[11]  David Correa Martins,et al.  Feature selection environment for genomic applications , 2008, BMC Bioinformatics.

[12]  Sergios Theodoridis,et al.  Pattern Recognition, Fourth Edition , 2008 .

[13]  Edward R Dougherty,et al.  Validation of Inference Procedures for Gene Regulatory Networks , 2007, Current genomics.

[14]  A. Mortazavi,et al.  Genome-Wide Mapping of in Vivo Protein-DNA Interactions , 2007, Science.

[15]  Christian J Stoeckert,et al.  Computational modeling of the Plasmodium falciparum interactome reveals protein function on a genome-wide scale. , 2006, Genome research.

[16]  M. Vignali,et al.  A protein interaction network of the malaria parasite Plasmodium falciparum , 2005, Nature.

[17]  S. L. Wong,et al.  Towards a proteome-scale map of the human protein–protein interaction network , 2005, Nature.

[18]  M. Gerstein,et al.  Assessing the limits of genomic data integration for predicting protein networks. , 2005, Genome research.

[19]  J. Derisi,et al.  The Transcriptome of the Intraerythrocytic Developmental Cycle of Plasmodium falciparum , 2003, PLoS biology.

[20]  Ji Huang,et al.  [Serial analysis of gene expression]. , 2002, Yi chuan = Hereditas.

[21]  R. Veitia,et al.  Rosetta Stone proteins: "chance and necessity"? , 2002, Genome Biology.

[22]  A. Grigoriev A relationship between gene expression and protein interactions on the proteome scale: analysis of the bacteriophage T7 and the yeast Saccharomyces cerevisiae. , 2001, Nucleic acids research.

[23]  R. Ozawa,et al.  A comprehensive two-hybrid analysis to explore the yeast protein interactome , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[24]  Patrik D'haeseleer,et al.  Genetic network inference: from co-expression clustering to reverse engineering , 2000, Bioinform..

[25]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[26]  Andrew R. Webb,et al.  Statistical Pattern Recognition , 1999 .

[27]  D. Eisenberg,et al.  Detecting protein function and protein-protein interactions from genome sequences. , 1999, Science.

[28]  D. Eisenberg,et al.  Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[29]  Ronald W. Davis,et al.  Quantitative Monitoring of Gene Expression Patterns with a Complementary DNA Microarray , 1995, Science.

[30]  Josef Kittler,et al.  Floating search methods in feature selection , 1994, Pattern Recognit. Lett..

[31]  N. Gulbahce,et al.  Network medicine: a network-based approach to human disease , 2010, Nature Reviews Genetics.

[32]  M. Gerstein,et al.  RNA-Seq: a revolutionary tool for transcriptomics , 2009, Nature Reviews Genetics.

[33]  Gang Wang,et al.  ConiferEST: an integrated bioinformatics system for data reprocessing and mining of conifer expressed sequence tags (ESTs) , 2007, BMC Genomics.

[34]  F. Leonardi,et al.  A NEW ANNOTATION TOOL FOR MALARIA BASED ON INFERENCE OF PROBABILISTIC GENETIC NETWORKS , 2004 .

[35]  Hui Lu,et al.  Correlation between gene expression profiles and protein-protein interactions within and across genomes , 2005, Bioinform..

[36]  Gene Ontology Consortium The Gene Ontology (GO) database and informatics resource , 2003 .

[37]  M. Gerstein,et al.  Relating whole-genome expression data with protein-protein interactions. , 2002, Genome research.

[38]  Anil K. Jain,et al.  Statistical Pattern Recognition: A Review , 2000, IEEE Trans. Pattern Anal. Mach. Intell..

[39]  Dmitrij Frishman,et al.  MIPS: a database for genomes and protein sequences , 1999, Nucleic Acids Res..

[40]  Hiroyuki Ogata,et al.  KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..