Rice PHYC gene: structure, expression, map position and evolution

[1]  E. López-Juez,et al.  The cucumber long hypocotyl mutant lacks a light-stable PHYB-like phytochrome. , 1992, The Plant cell.

[2]  J. Hughes,et al.  Non‐angiosperm phytochromes and the evolution of vascular plants , 1998 .

[3]  M. Matsui,et al.  Molecular analysis of PHYA in wild-type and phytochrome A-deficient mutants of tomato. , 1998, The Plant journal : for cell and molecular biology.

[4]  P. Quail An emerging molecular map of the phytochromes , 1997 .

[5]  D. E. Somers,et al.  Photophysiology of the Elongated Internode (ein) Mutant of Brassica rapa: ein Mutant Lacks a Detectable Phytochrome B-Like Polypeptide. , 1992, Plant physiology.

[6]  E. Schäfer,et al.  Tobacco phytochromes: Genes, structure and expression , 1997 .

[7]  N. Hartley,et al.  The PHYC Gene of Arabidopsis (Absence of the Third Intron Found in PHYA and PHYB) , 1994, Plant physiology.

[8]  B. Larkins,et al.  Partial sequencing and mapping of clones from two maize cDNA libraries , 1994, Plant Molecular Biology.

[9]  A. Riggs,et al.  Genomic Sequencing , 2010 .

[10]  C. Baysdorfer,et al.  RFLP mapping of partially sequenced leaf cDNA clones in maize , 1994, Theoretical and Applied Genetics.

[11]  B. Thomas,et al.  Expression of heterologous phytochromes A, B or C in transgenic tobacco plants alters vegetative development and flowering time. , 1997, The Plant journal : for cell and molecular biology.

[12]  S. Mathews,et al.  Phytochrome gene diversity , 1997 .

[13]  D. D. Kosambi The estimation of map distances from recombination values. , 1943 .

[14]  P. Quail Phytochrome genes and their expression , 1994 .

[15]  R. E. Kendrick PHOTOMORPHOGENESIS IN PLANTS , 1988, Springer Netherlands.

[16]  A J Davison,et al.  Structure of vaccinia virus early promoters. , 1989, Journal of molecular biology.

[17]  L. Kozma-Bognár,et al.  Transcription of tobacco phytochrome-A genes initiates at multiple start sites and requires multiple cis-acting regulatory elements , 1995, Plant Molecular Biology.

[18]  N. Sato Nucleotide sequence and expression of the phytochrome gene in Pisum sativum: Differential regulation by light of multiple transcripts , 1988, Plant Molecular Biology.

[19]  P. Quail,et al.  Nucleotide sequence and characterization of a gene encoding the phytochrome polypeptide from Avena. , 1987, Gene.

[20]  S. Tanksley,et al.  Saturated molecular map of the rice genome based on an interspecific backcross population. , 1994, Genetics.

[21]  P. Quail,et al.  The phytochromes: A biochemical mechanism of signaling in sight? , 1997, BioEssays : news and reviews in molecular, cellular and developmental biology.

[22]  A J Davison,et al.  Structure of vaccinia virus late promoters. , 1989, Journal of molecular biology.

[23]  A. Parco,et al.  Centromere mapping and orientation of the molecular linkage map of rice (Oryza sativa L.). , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[24]  R. Alba,et al.  The phytochrome gene family in tomato (Solanum lycopersicum L.) , 1997 .

[25]  P. Quail,et al.  Phytochromes: photosensory perception and signal transduction , 1995, Science.

[26]  S. Kay,et al.  The sequence of the rice phytochrome gene. , 1989, Nucleic acids research.

[27]  S. Kay,et al.  Sequence of a Tobacco (Nicotiana tabacum) Gene Coding for Type A Phytochrome , 1993, Plant physiology.

[28]  P. Quail,et al.  Novel phytochrome sequences in Arabidopsis thaliana: structure, evolution, and differential expression of a plant regulatory photoreceptor family. , 1989, Genes & development.

[29]  S. Tanksley,et al.  Comparative linkage maps of the rice and maize genomes. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[30]  P. Quail Photosensory perception and signal transduction in plants. , 1994, Current opinion in genetics & development.

[31]  O. Britanova,et al.  Amplification of cDNA ends based on template-switching effect and step-out PCR. , 1999, Nucleic acids research.

[32]  S. Tanksley,et al.  Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) , 1991 .

[33]  S. Marx,et al.  PHYTOCHROME EVOLUTION: A PHYLOGENETIC TREE WITH THE FIRST COMPLETE SEQUENCE OF PHYTOCHROME FROM A CRYPTOGAMIC PLANT: (Selaginella martensii SPRING) , 1992, Photochemistry and photobiology.

[34]  R. Sharrock,et al.  Differential Patterns of Expression of the Arabidopsis PHYB, PHYD, and PHYE Phytochrome Genes , 1997, Plant physiology.

[35]  C. Gatz,et al.  Isolation and characterization of a cDNA-clone coding for potato type A phytochrome , 1992, Plant Molecular Biology.

[36]  A. Geballe 6 Translational Control Mediated by Upstream AUG Codons , 1996 .

[37]  R. Kuhn,et al.  Overexpressed phytochrome C has similar photosensory specificity to phytochrome B but a distinctive capacity to enhance primary leaf expansion. , 1997, The Plant journal : for cell and molecular biology.

[38]  C. Gatz,et al.  Isolation and characterization of a cDNA-clone coding for potato type B phytochrome , 2004, Plant Molecular Biology.

[39]  Michael Lee,et al.  Comparative mapping in F2∶3 and F6∶7 generations of quantitative trait loci for grain yield and yield components in maize , 1996, Theoretical and Applied Genetics.

[40]  J. Chory,et al.  Mutations in the gene for the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development. , 1993, The Plant cell.

[41]  S. Shuman,et al.  Accelerated mRNA decay in conditional mutants of yeast mRNA capping enzyme. , 1998, Nucleic acids research.

[42]  S. Mathews,et al.  The phytochrome gene family in grasses (Poaceae): a phylogeny and evidence that grasses have a subset of the loci found in dicot angiosperms. , 1996, Molecular biology and evolution.

[43]  S. Tanksley,et al.  An RFLP-based linkage map of oats based on a cross between two diploid taxa (Avena atlantica × A. hirtula) , 1992 .

[44]  Clas-Tomas Larsson,et al.  Phytochrome types in Picea and Pinus. Expression patterns of PHYA-related types , 1999, Plant Molecular Biology.

[45]  G. S. Khush,et al.  Molecular mapping of rice chromosomes , 1988, Theoretical and Applied Genetics.

[46]  S. C. Liu,et al.  Detailed alignment of saccharum and sorghum chromosomes: comparative organization of closely related diploid and polyploid genomes. , 1998, Genetics.

[47]  J. Doebley,et al.  Construction of an RFLP map in sorghum and comparative mapping in maize. , 1994, Genome.

[48]  Andrew H. Paterson,et al.  Convergent Domestication of Cereal Crops by Independent Mutations at Corresponding Genetic Loci , 1995, Science.

[49]  J. Lagarias,et al.  The phytochrome photoreceptor in the green alga Mesotaenium caldariorum: implication for a conserved mechanism of phytochrome action , 1997 .

[50]  K. Yeh,et al.  Eukaryotic phytochromes: light-regulated serine/threonine protein kinases with histidine kinase ancestry. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[51]  P. Quail,et al.  Structure and expression of a maize phytochrome-encoding gene. , 1989, Gene.

[52]  M. Daly,et al.  MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. , 1987, Genomics.

[53]  D. Shima,et al.  The Mouse Gene for Vascular Endothelial Growth Factor , 1996, The Journal of Biological Chemistry.

[54]  P. Quail,et al.  phyB is evolutionarily conserved and constitutively expressed in rice seedling shoots , 1991, Molecular and General Genetics MGG.

[55]  P. Quail,et al.  Analysis of cloned cDNA and genomic sequences for phytochrome: complete amino acid sequences for two gene products expressed in etiolated Avena. , 1985, Nucleic acids research.

[56]  Shu-Hsing Wu,et al.  Atypical phytochrome gene structure in the green alga Mesotaenium caldariorum , 1995, Plant Molecular Biology.

[57]  M. Scott,et al.  Homeotic gene Antennapedia mRNA contains 5'-noncoding sequences that confer translational initiation by internal ribosome binding. , 1992, Genes & development.

[58]  S. Mathews,et al.  Evolution of the Phytochrome Gene Family and Its Utility for Phylogenetic Analyses of Angiosperms , 1995 .

[59]  S. Kay,et al.  The rice phytochrome gene: structure, autoregulated expression, and binding of GT-1 to a conserved site in the 5' upstream region. , 1989, The Plant cell.

[60]  D. E. Somers,et al.  Temporal and spatial expression patterns of PHYA and PHYB genes in Arabidopsis. , 1995, The Plant journal : for cell and molecular biology.

[61]  M. Matsui,et al.  Characterization of tomato PHYB1 and identification of molecular defects in four mutant alleles , 1998, Plant Molecular Biology.

[62]  G. Whitelam,et al.  Phytochrome E Influences Internode Elongation and Flowering Time in Arabidopsis , 1998, Plant Cell.

[63]  M. Lee,et al.  Genetic resolution and verification of quantitative trait loci for flowering and plant height with recombinant inbred lines of maize. , 1996, Genome.

[64]  T. Kaneko,et al.  Physical and gene maps of the unicellular cyanobacterium Synechococcus sp. strain PCC6301 genome , 1996, Plant Molecular Biology.

[65]  B. Hauser,et al.  Photomorphogenic mutants of tomato , 1997, Euphytica.

[66]  M. Senior,et al.  Simple Sequence Repeat Markers Developed from Maize Sequences Found in the GENBANK Database: Map Construction , 1996 .

[67]  D. E. Somers,et al.  THE Arabidopsis PHYTOCHROME A GENE HAS MULTIPLE TRANSCRIPTION START SITES AND A PROMOTER SEQUENCE MOTIF HOMOLOGOUS TO THE REPRESSOR ELEMENT OF MONOCOT PHYTOCHROME A GENES , 1994, Photochemistry and photobiology.

[68]  S. Mccouch,et al.  Inferences on the genome structure of progenitor maize through comparative analysis of rice, maize and the domesticated panicoids. , 1999, Genetics.

[69]  J. Mullet,et al.  The Sorghum Photoperiod Sensitivity Gene, Ma3, Encodes a Phytochrome B , 1997, Plant physiology.

[70]  G. Whitelam,et al.  Roles of different phytochromes in Arabidopsis photomorphogenesis , 1997 .