The complete mitochondrial genome sequence of the world's largest fish, the whale shark (Rhincodon typus), and its comparison with those of related shark species.

[1]  Dan Xiang,et al.  Complete mitochondrial genome of the scalloped hammerhead Sphyrna lewini (Carcharhiniformes: Sphyrnidae) , 2015, Mitochondrial DNA.

[2]  A. Tsai,et al.  The complete mitochondrial genome of the shortfin mako, Isurus oxyrinchus (Chondrichthyes, Lamnidae) , 2015, Mitochondrial DNA.

[3]  Min Liu,et al.  Complete mitochondrial genome of the Japanese wobbegong Orectolobus japonicus (Orectolobiformes: Orectolobidae) , 2015, Mitochondrial DNA.

[4]  Dan Xiang,et al.  Complete mitochondrial genome of the tiger shark Galeocerdo cuvier (Carcharhiniformes: Carcharhinidae) , 2014, Mitochondrial DNA.

[5]  P. Feutry,et al.  Complete mitochondrial genome of the Critically Endangered speartooth shark Glyphis glyphis (Carcharhiniformes: Carcharhinidae) , 2014, Mitochondrial DNA.

[6]  K. Shao,et al.  The complete mitochondrial genome of the great white shark, Carcharodon carcharias (Chondrichthyes, Lamnidae) , 2014, Mitochondrial DNA.

[7]  K. Shao,et al.  The complete mitochondrial genome of the big-eye thresher shark, Alopias superciliosus (Chondrichthyes, Alopiidae) , 2014, Mitochondrial DNA.

[8]  K. Shao,et al.  Complete mitochondrial genome of the megamouth shark Megachasma pelagios (Chondrichthyes, Megachasmidae) , 2014, Mitochondrial DNA.

[9]  Xiao Chen,et al.  Complete mitochondrial genome of the brownbanded bamboo shark Chiloscyllium punctatum , 2014, Mitochondrial DNA.

[10]  Xin Peng,et al.  Complete mitochondrial genome of the spadenose shark (Scoliodon macrorhynchos) , 2014, Mitochondrial DNA.

[11]  J. Ovenden,et al.  The complete mitochondrial genome of the dusky shark Carcharhinus obscurus , 2013, Mitochondrial DNA.

[12]  Jerzy K. Kulski,et al.  Evolutionary Relations of Hexanchiformes Deep-Sea Sharks Elucidated by Whole Mitochondrial Genome Sequences , 2013, BioMed research international.

[13]  M. Miya,et al.  MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline , 2013, Molecular biology and evolution.

[14]  Shengyun Yang,et al.  The complete mitochondrial genome of the grey bamboo shark (Chiloscyllium griseum) (Orectolobiformes: Hemiscylliidae): genomic characterization and phylogenetic application , 2013, Acta Oceanologica Sinica.

[15]  J. Guan,et al.  Automatically clustering large-scale miRNA sequences: methods and experiments , 2012, BMC Genomics.

[16]  Adriano S. Arantes,et al.  Comparing thousands of circular genomes using the CGView Comparison Tool , 2012, BMC Genomics.

[17]  D. Rowat,et al.  A review of the biology, fisheries and conservation of the whale shark Rhincodon typus. , 2012, Journal of fish biology.

[18]  Maxim Teslenko,et al.  MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space , 2012, Systematic biology.

[19]  Ingi Agnarsson,et al.  Shark tales: a molecular species-level phylogeny of sharks (Selachimorpha, Chondrichthyes). , 2011, Molecular phylogenetics and evolution.

[20]  J. Ragle,et al.  IUCN Red List of Threatened Species , 2010 .

[21]  Rafael Bravo de la Parra,et al.  Feeding anatomy, filter-feeding rate, and diet of whale sharks Rhincodon typus during surface ram filter feeding off the Yucatan Peninsula, Mexico. , 2010, Zoology.

[22]  Richard Durbin,et al.  Fast and accurate long-read alignment with Burrows–Wheeler transform , 2010, Bioinform..

[23]  N. Galtier,et al.  Mitochondrial DNA as a marker of molecular diversity: a reappraisal , 2009, Molecular ecology.

[24]  R. Harcourt,et al.  Nuclear and mitochondrial DNA reveals isolation of imperilled grey nurse shark populations (Carcharias taurus) , 2009, Molecular ecology.

[25]  M. Levine,et al.  Low Genetic Differentiation across Three Major Ocean Populations of the Whale Shark, Rhincodon typus , 2009, PloS one.

[26]  E. Birney,et al.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.

[27]  M. Meekan,et al.  Population genetic structure of Earth's largest fish, the whale shark (Rhincodon typus) , 2007, Molecular ecology.

[28]  O. Ryder,et al.  Analysis of complete mitochondrial genome sequences increases phylogenetic resolution of bears (Ursidae), a mammalian family that experienced rapid speciation , 2007, BMC Evolutionary Biology.

[29]  D. Ussery,et al.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes , 2007, Nucleic acids research.

[30]  A. Munguía-Vega,et al.  Variations of the mitochondrial control region sequence in whale sharks (Rhincodon typus) from the Gulf of California, Mexico , 2007 .

[31]  J. Taylor Ram filter-feeding and nocturnal feeding of whale sharks (Rhincodon typus) at Ningaloo Reef, Western Australia , 2007 .

[32]  Alexandros Stamatakis,et al.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models , 2006, Bioinform..

[33]  D. Posada,et al.  ProtTest: selection of best-fit models of protein evolution , 2005, Bioinform..

[34]  Robert C. Edgar,et al.  MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.

[35]  P. Waddell,et al.  The complete mitochondrial DNA sequence of the shark Mustelus manazo: evaluating rooting contradictions to living bony vertebrates. , 1998, Molecular biology and evolution.

[36]  P. Janvier,et al.  The complete nucleotide sequence of the mitochondrial DNA of the dogfish, Scyliorhinus canicula. , 1998, Genetics.

[37]  S. Pääbo,et al.  Conflict Among Individual Mitochondrial Proteins in Resolving the Phylogeny of Eutherian Orders , 1998, Journal of Molecular Evolution.

[38]  S. Eddy,et al.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. , 1997, Nucleic acids research.

[39]  J. Felsenstein CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP , 1985, Evolution; international journal of organic evolution.

[40]  F Keith Barker,et al.  Empirical evaluation of partitioning schemes for phylogenetic analyses of mitogenomic data: an avian case study. , 2013, Molecular phylogenetics and evolution.

[41]  Andrew P. Martin,et al.  Independent Origins of Filter-Feeding in Megamouth and Basking Sharks (Order Lamniformes) Inferred from Phylogenetic Analysis of Cytochrome b Gene Sequences , 2012 .

[42]  Claude-Alain H. Roten,et al.  Theoretical and practical advances in genome halving , 2004 .

[43]  L. Compagno,et al.  Sharks of the world :an annotated and illustrated catalogue of shark species known to date , 1984 .

[44]  Steven J. M. Jones,et al.  Abyss: a Parallel Assembler for Short Read Sequence Data Material Supplemental Open Access , 2022 .