Non-Homologous End-Joining Pathway Associated with Occurrence of Myocardial Infarction: Gene Set Analysis of Genome-Wide Association Study Data

Purpose DNA repair deficiencies have been postulated to play a role in the development and progression of cardiovascular disease (CVD). The hypothesis is that DNA damage accumulating with age may induce cell death, which promotes formation of unstable plaques. Defects in DNA repair mechanisms may therefore increase the risk of CVD events. We examined whether the joints effect of common genetic variants in 5 DNA repair pathways may influence the risk of CVD events. Methods The PLINK set-based test was used to examine the association to myocardial infarction (MI) of the DNA repair pathway in GWAS data of 866 subjects of the GENetic DEterminants of Restenosis (GENDER) study and 5,244 subjects of the PROspective Study of Pravastatin in the Elderly at Risk (PROSPER) study. We included the main DNA repair pathways (base excision repair, nucleotide excision repair, mismatch repair, homologous recombination and non-homologous end-joining (NHEJ)) in the analysis. Results The NHEJ pathway was associated with the occurrence of MI in both GENDER (P = 0.0083) and PROSPER (P = 0.014). This association was mainly driven by genetic variation in the MRE11A gene (PGENDER = 0.0001 and PPROSPER = 0.002). The homologous recombination pathway was associated with MI in GENDER only (P = 0.011), for the other pathways no associations were observed. Conclusion This is the first study analyzing the joint effect of common genetic variation in DNA repair pathways and the risk of CVD events, demonstrating an association between the NHEJ pathway and MI in 2 different cohorts.

[1]  A. Zwinderman,et al.  A genome-wide association study identifies a region at chromosome 12 as a potential susceptibility locus for restenosis after percutaneous coronary intervention. , 2011, Human molecular genetics.

[2]  M. Weitzman,et al.  The MRN complex in double‐strand break repair and telomere maintenance , 2010, FEBS letters.

[3]  Antonio Brunetti,et al.  Insulin Resistance and Cancer Risk: An Overview of the Pathogenetic Mechanisms , 2012, Experimental diabetes research.

[4]  T. Mikkelsen,et al.  Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites , 2007, Proceedings of the National Academy of Sciences.

[5]  M. Bennett,et al.  DNA damage and repair in atherosclerosis. , 2006, Cardiovascular research.

[6]  Kristina Allen-Brady,et al.  Characterization of the linkage disequilibrium structure and identification of tagging-SNPs in five DNA repair genes , 2005, BMC Cancer.

[7]  M. Satoh,et al.  Association between oxidative DNA damage and telomere shortening in circulating endothelial progenitor cells obtained from metabolic syndrome patients with coronary artery disease. , 2008, Atherosclerosis.

[8]  Hsiao-Wei Wang,et al.  Polymorphisms of DNA repair pathway genes and cigarette smoking in relation to susceptibility to large artery atherosclerotic stroke among ethnic Chinese in Taiwan. , 2012, Journal of atherosclerosis and thrombosis.

[9]  T. Kumaravel,et al.  Measurement of oxidative DNA damage induced by mainstream cigarette smoke in cultured NCI-H292 human pulmonary carcinoma cells. , 2009, Mutation research.

[10]  A. Uitterlinden,et al.  Gene set analysis of GWAS data for human longevity highlights the relevance of the insulin/IGF-1 signaling and telomere maintenance pathways , 2011, AGE.

[11]  S. Blankenberg,et al.  Genomewide association studies in cardiovascular disease--an update 2011. , 2012, Clinical chemistry.

[12]  Antonio Vidal-Puig,et al.  DNA Damage Links Mitochondrial Dysfunction to Atherosclerosis and the Metabolic Syndrome , 2010, Circulation research.

[13]  C. Gieger,et al.  Genomewide association analysis of coronary artery disease. , 2007, The New England journal of medicine.

[14]  James Bailey,et al.  is-rSNP: a novel technique for in silico regulatory SNP detection , 2010, BMC Bioinformatics.

[15]  P. Macfarlane,et al.  The design of a prospective study of Pravastatin in the Elderly at Risk (PROSPER). PROSPER Study Group. PROspective Study of Pravastatin in the Elderly at Risk. , 1999, The American journal of cardiology.

[16]  L. Liang,et al.  A genome-wide association study of global gene expression , 2007, Nature Genetics.

[17]  K. Mossman The Wellcome Trust Case Control Consortium, U.K. , 2008 .

[18]  V. Borde,et al.  Double functions for the Mre11 complex during DNA double-strand break repair and replication. , 2009, The international journal of biochemistry & cell biology.

[19]  G. N. da Silva,et al.  DNA repair gene polymorphism is associated with the genetic basis of atherosclerotic coronary artery disease. , 2011, Cardiovascular pathology : the official journal of the Society for Cardiovascular Pathology.

[20]  E. Bramucci,et al.  Different Quantitative Apoptotic Traits in Coronary Atherosclerotic Plaques From Patients With Stable Angina Pectoris and Acute Coronary Syndromes , 2004, Circulation.

[21]  Steen Knudsen,et al.  Promoter2.0: for the recognition of PolII promoter sequences , 1999, Bioinform..

[22]  D. Bruemmer,et al.  Telomerase Activation in Atherosclerosis and Induction of Telomerase Reverse Transcriptase Expression by Inflammatory Stimuli in Macrophages , 2011, Arteriosclerosis, thrombosis, and vascular biology.

[23]  N. Sattar,et al.  Replication of LDL GWAs hits in PROSPER/PHASE as validation for future (pharmaco)genetic analyses , 2011, BMC Medical Genetics.

[24]  C. Abnet,et al.  A prospective study of polymorphisms of DNA repair genes XRCC1, XPD23 and APE/ref-1 and risk of stroke in Linxian, China , 2007, Journal of Epidemiology and Community Health.

[25]  G. Abecasis,et al.  MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes , 2010, Genetic epidemiology.

[26]  Susumu Goto,et al.  KEGG for integration and interpretation of large-scale molecular data sets , 2011, Nucleic Acids Res..

[27]  J. Petrini,et al.  DNA replication-dependent nuclear dynamics of the Mre11 complex. , 2003, Molecular cancer research : MCR.

[28]  M. Andreassi Coronary atherosclerosis and somatic mutations: an overview of the contributive factors for oxidative DNA damage. , 2003, Mutation research.

[29]  Ryoko Sanbonmatsu,et al.  VarySysDB: a human genetic polymorphism database based on all H-InvDB transcripts , 2008, Nucleic Acids Res..

[30]  N. Schork,et al.  Pathway analysis of seven common diseases assessed by genome-wide association. , 2008, Genomics.

[31]  DNA repair mechanisms in mammalian germ cells. , 2011, Histology and histopathology.

[32]  Gonçalo R. Abecasis,et al.  Genetic variants regulating ORMDL3 expression contribute to the risk of childhood asthma , 2007, Nature.

[33]  N. Mehta Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease. , 2011, Circulation. Cardiovascular genetics.

[34]  H. Hakonarson,et al.  Analysing biological pathways in genome-wide association studies , 2010, Nature Reviews Genetics.

[35]  Deng-Chyang Wu,et al.  Activation of telomerase and expression of human telomerase reverse transcriptase in coronary atherosclerosis. , 2005, Cardiovascular pathology : the official journal of the Society for Cardiovascular Pathology.

[36]  P. Macfarlane,et al.  Pravastatin in elderly individuals at risk of vascular disease (PROSPER): a randomised controlled trial , 2002, The Lancet.

[37]  A. Zwinderman,et al.  Current PTCA practice and clinical outcomes in The Netherlands: the real world in the pre-drug-eluting stent era. , 2004, European heart journal.

[38]  Mary Ellen Wiltrout,et al.  Eukaryotic Translesion Polymerases and Their Roles and Regulation in DNA Damage Tolerance , 2009, Microbiology and Molecular Biology Reviews.

[39]  Simon C. Potter,et al.  Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls , 2007, Nature.

[40]  Yunje Cho,et al.  Crystal structure of human Mre11: understanding tumorigenic mutations. , 2011, Structure.

[41]  P. Kirkpatrick,et al.  Vascular Smooth Muscle Cells Undergo Telomere-Based Senescence in Human Atherosclerosis: Effects of Telomerase and Oxidative Stress , 2006, Circulation research.

[42]  I. Komuro,et al.  Vascular Cell Senescence: Contribution to Atherosclerosis , 2007, Circulation research.

[43]  Frédérick A. Mallette,et al.  Endogenous oxidative stress prevents telomerase-dependent immortalization of human endothelial cells , 2010, Mechanisms of Ageing and Development.

[44]  Morihiro Matsuda,et al.  Increased oxidative stress in obesity and its impact on metabolic syndrome. , 2004, The Journal of clinical investigation.

[45]  J. Skepper,et al.  Prelamin A Acts to Accelerate Smooth Muscle Cell Senescence and Is a Novel Biomarker of Human Vascular Aging , 2010, Circulation.

[46]  K. Kyriacou,et al.  DNA-repair genetic polymorphisms and risk of breast cancer in Cyprus , 2009, Breast Cancer Research and Treatment.

[47]  J. Tainer,et al.  Mre11-Rad50-Nbs1 conformations and the control of sensing, signaling, and effector responses at DNA double-strand breaks. , 2010, DNA repair.

[48]  M. Desnos,et al.  In Vivo Induction of Endothelial Apoptosis Leads to Vessel Thrombosis and Endothelial Denudation: A Clue to the Understanding of the Mechanisms of Thrombotic Plaque Erosion , 2004, Circulation.

[49]  Ananya Choudhury,et al.  Analysis of variants in DNA damage signalling genes in bladder cancer , 2008, BMC Medical Genetics.

[50]  Hongsheng Gui,et al.  Comparisons of seven algorithms for pathway analysis using the WTCCC Crohn's Disease dataset , 2011, BMC Research Notes.

[51]  T. Stankovic,et al.  The DNA Double-Strand Break Repair Gene hMRE11 Is Mutated in Individuals with an Ataxia-Telangiectasia-like Disorder , 1999, Cell.

[52]  Manuel A. R. Ferreira,et al.  PLINK: a tool set for whole-genome association and population-based linkage analyses. , 2007, American journal of human genetics.

[53]  I. Ockene,et al.  Cigarette smoking, cardiovascular disease, and stroke: a statement for healthcare professionals from the American Heart Association. American Heart Association Task Force on Risk Reduction. , 1997, Circulation.

[54]  B. Lüderitz,et al.  Role of smooth muscle cell death in advanced coronary primary lesions: implications for plaque instability. , 1999, Cardiovascular research.

[55]  V. Borde The multiple roles of the Mre11 complex for meiotic recombination , 2007, Chromosome Research.

[56]  D. Wallace,et al.  Hypoxemia is associated with mitochondrial DNA damage and gene induction. Implications for cardiac disease. , 1991, JAMA.

[57]  M. Blasco,et al.  Mice Deficient in Telomerase Activity Develop Hypertension Because of an Excess of Endothelin Production , 2006, Circulation.

[58]  M. Blasco,et al.  Short telomeres protect from diet‐induced atherosclerosis in apolipoprotein E‐null mice , 2004, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[59]  Albert Hofman,et al.  Nucleotide Excision DNA Repair Is Associated With Age-Related Vascular Dysfunction , 2012, Circulation.