Transcriptome-wide profiling and expression analysis of transcription factor families in a liverwort, Marchantia polymorpha
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[1] P. Bhalla,et al. Transcriptome-wide profiling and expression analysis of transcription factor families in a liverwort, Marchantia polymorpha , 2013, BMC Genomics.
[2] D. Wagner,et al. A molecular framework for auxin-mediated initiation of flower primordia. , 2013, Developmental cell.
[3] J. Bowman. Walkabout on the long branches of plant evolution. , 2013, Current opinion in plant biology.
[4] Jean-Michel Claverie,et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation , 2012, Genome Biology.
[5] Martin Vingron,et al. Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels , 2012, Bioinform..
[6] L. Dolan,et al. Morphological evolution in land plants: new designs with old genes , 2012, Philosophical Transactions of the Royal Society B: Biological Sciences.
[7] T. Sakurai,et al. In Silico Analysis of Transcription Factor Repertoires and Prediction of Stress-Responsive Transcription Factors from Six Major Gramineae Plants , 2011, DNA research : an international journal for rapid publication of reports on genes and genomes.
[8] Michael S. Barker,et al. The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants , 2011, Science.
[9] E. Grotewold,et al. Evolutionary and comparative analysis of MYB and bHLH plant transcription factors. , 2011, The Plant journal : for cell and molecular biology.
[10] Richard M. Clark,et al. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change , 2011, Nature Genetics.
[11] Fatih Ozsolak,et al. RNA sequencing: advances, challenges and opportunities , 2011, Nature Reviews Genetics.
[12] Akhilesh K. Tyagi,et al. De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification , 2011, DNA research : an international journal for rapid publication of reports on genes and genomes.
[13] E. Scarpella,et al. Simultaneous activation of SHR and ATHB8 expression defines switch to preprocambial cell state in Arabidopsis leaf development , 2011, Developmental dynamics : an official publication of the American Association of Anatomists.
[14] Liang Tang,et al. PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database , 2010, Nucleic Acids Res..
[15] Jean-Michel Claverie,et al. The Chlorella variabilis NC64A Genome Reveals Adaptation to Photosymbiosis, Coevolution with Viruses, and Cryptic Sex[C][W] , 2010, Plant Cell.
[16] B. Mueller‐Roeber,et al. Genome-Wide Phylogenetic Comparative Analysis of Plant Transcriptional Regulation: A Timeline of Loss, Gain, Expansion, and Correlation with Complexity , 2010, Genome biology and evolution.
[17] D. Robertson,et al. Genome-Wide Classification and Evolutionary Analysis of the bHLH Family of Transcription Factors in Arabidopsis, Poplar, Rice, Moss, and Algae1[W] , 2010, Plant Physiology.
[18] H. Saedler,et al. MIKC* MADS-box proteins: conserved regulators of the gametophytic generation of land plants. , 2010, Molecular biology and evolution.
[19] L. Dolan,et al. Origin and Diversification of Basic-Helix-Loop-Helix Proteins in Plants , 2009, Molecular biology and evolution.
[20] Birgit Kersten,et al. PlnTFDB: updated content and new features of the plant transcription factor database , 2009, Nucleic Acids Res..
[21] He Zhang,et al. Computational identification of plant transcription factors and the construction of the PlantTFDB database. , 2010, Methods in molecular biology.
[22] C. Delwiche,et al. Uncovering the evolutionary origin of plant molecular processes: comparison of Coleochaete (Coleochaetales) and Spirogyra (Zygnematales) transcriptomes , 2010, BMC Plant Biology.
[23] C. Airoldi. Determination of sexual organ development , 2010, Sexual Plant Reproduction.
[24] J. Chris Pires,et al. Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes , 2009, Chromosome Research.
[25] S. Chen,et al. Soybean Trihelix Transcription Factors GmGT-2A and GmGT-2B Improve Plant Tolerance to Abiotic Stresses in Transgenic Arabidopsis , 2009, PloS one.
[26] T. Wada,et al. The Trihelix Transcription Factor GTL1 Regulates Ploidy-Dependent Cell Growth in the Arabidopsis Trichome[W][OA] , 2009, The Plant Cell Online.
[27] A. Salamov,et al. Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas , 2009, Science.
[28] Xiang Li,et al. Repression of Seed Maturation Genes by a Trihelix Transcriptional Repressor in Arabidopsis Seedlings[W] , 2009, The Plant Cell Online.
[29] T. Joshi,et al. Update on Legume Transcription Factors Legume Transcription Factor Genes: What Makes Legumes So Special? , 2009 .
[30] Cole Trapnell,et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome , 2009, Genome Biology.
[31] Felipe F. Aceituno,et al. The rules of gene expression in plants: Organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana , 2008, BMC Genomics.
[32] B. Williams,et al. Mapping and quantifying mammalian transcriptomes by RNA-Seq , 2008, Nature Methods.
[33] U. Goodenough,et al. Early Sexual Origins of Homeoprotein Heterodimerization and Evolution of the Plant KNOX/BELL Family , 2008, Cell.
[34] E. Birney,et al. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.
[35] J. Bennetzen,et al. The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants , 2008, Science.
[36] Xin Chen,et al. PlantTFDB: a comprehensive plant transcription factor database , 2007, Nucleic Acids Res..
[37] Rongcheng Lin,et al. Transposase-Derived Transcription Factors Regulate Light Signaling in Arabidopsis , 2007, Science.
[38] B. Shuai,et al. LATERAL ORGAN BOUNDARIES defines a new family of DNA-binding transcription factors and can interact with specific bHLH proteins , 2007, Nucleic acids research.
[39] Nicholas H. Putnam,et al. The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation , 2007, Proceedings of the National Academy of Sciences.
[40] John L. Bowman,et al. Green Genes—Comparative Genomics of the Green Branch of Life , 2007, Cell.
[41] N. Rajewsky,et al. The evolution of gene regulation by transcription factors and microRNAs , 2007, Nature Reviews Genetics.
[42] N. R. Friedman,et al. The VARL Gene Family and the Evolutionary Origins of the Master Cell-Type Regulatory Gene, regA, in Volvox carteri , 2007, Journal of Molecular Evolution.
[43] Ingo Dreyer,et al. PlnTFDB: an integrative plant transcription factor database , 2007, BMC Bioinformatics.
[44] Dirk Inzé,et al. Cell cycle regulation in plant development. , 2006, Annual review of genetics.
[45] L. Forrest,et al. Unraveling the evolutionary history of the liverworts (Marchantiophyta): multiple taxa, genomes and analyses , 2006 .
[46] B. De Baets,et al. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[47] Brian C. Thomas,et al. Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity. , 2006, Genome research.
[48] Leah Barrera,et al. The transcriptional regulatory code of eukaryotic cells--insights from genome-wide analysis of chromatin organization and transcription factor binding. , 2006, Current opinion in cell biology.
[49] J. Bowman,et al. Evolution of Class III Homeodomain–Leucine Zipper Genes in Streptophytes , 2006, Genetics.
[50] S. Piippo,et al. Illuminating the evolutionary history of liverworts (Marchantiophyta)—towards a natural classification , 2006, Cladistics : the international journal of the Willi Hennig Society.
[51] M. Bienz. The PHD finger, a nuclear protein-interaction domain. , 2006, Trends in biochemical sciences.
[52] D. Moreira,et al. Global dispersal and ancient cryptic species in the smallest marine eukaryotes. , 2006, Molecular biology and evolution.
[53] Wen-Hsiung Li,et al. Transcription Factor Families Have Much Higher Expansion Rates in Plants than in Animals1 , 2005, Plant Physiology.
[54] Klaus Richter,et al. A central role of Arabidopsis thaliana ovate family proteins in networking and subcellular localization of 3-aa loop extension homeodomain proteins. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[55] J. Fletcher,et al. ULTRAPETALA1 encodes a SAND domain putative transcriptional regulator that controls shoot and floral meristem activity in Arabidopsis , 2005, Development.
[56] G. Theißen,et al. Characterization of MADS-box genes in charophycean green algae and its implication for the evolution of MADS-box genes. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[57] Addie Nina Olsen,et al. NAC transcription factors: structurally distinct, functionally diverse. , 2005, Trends in plant science.
[58] Keiji Nishida,et al. Cyanidioschyzon merolae Genome. A Tool for Facilitating Comparable Studies on Organelle Biogenesis in Photosynthetic Eukaryotes1[w] , 2005, Plant Physiology.
[59] Felix Grewe,et al. Ancestors of trans-splicing mitochondrial introns support serial sister group relationships of hornworts and mosses with vascular plants. , 2004, Molecular biology and evolution.
[60] P. Brewer,et al. PETAL LOSS, a trihelix transcription factor gene, regulates perianth architecture in the Arabidopsis flower , 2004, Development.
[61] Nobutaka Mitsuda,et al. VOZ; isolation and characterization of novel vascular plant transcription factors with a one-zinc finger from Arabidopsis thaliana. , 2004, Plant & cell physiology.
[62] Pamela J Green,et al. Phylogenetic profiling of the Arabidopsis thaliana proteome: what proteins distinguish plants from other organisms? , 2004, Genome Biology.
[63] A. Weber,et al. EST-analysis of the thermo-acidophilic red microalga Galdieriasulphuraria reveals potential for lipid A biosynthesis and unveils the pathway of carbon export from rhodoplasts , 2004, Plant Molecular Biology.
[64] Cordelia Bolle,et al. The role of GRAS proteins in plant signal transduction and development , 2004, Planta.
[65] E. Liscum,et al. Genetics of Aux/IAA and ARF action in plant growth and development , 2002, Plant Molecular Biology.
[66] H. Fredericq,et al. Red (R), Far-red (FR) photoreversible control of growth and chlorophyll content in light-grown thalli ofMarchantia polymorpha L. , 1966, Naturwissenschaften.
[67] J. Kim,et al. The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis. , 2003, The Plant journal : for cell and molecular biology.
[68] C. Wellman,et al. Fragments of the earliest land plants , 2003, Nature.
[69] R. Tjian,et al. Transcription regulation and animal diversity , 2003, Nature.
[70] W. Atchley,et al. Phylogenetic Analysis of Plant Basic Helix-Loop-Helix Proteins , 2003, Journal of Molecular Evolution.
[71] William McGinnis,et al. Evolution of transcription factor function. , 2003, Current opinion in genetics & development.
[72] R. Marmorstein. Structure of SET domain proteins: a new twist on histone methylation. , 2003, Trends in biochemical sciences.
[73] E. Grotewold,et al. Recently Duplicated Maize R2R3 Myb Genes Provide Evidence for Distinct Mechanisms of Evolutionary Divergence after Duplication1 , 2003, Plant Physiology.
[74] S. Beckert,et al. Divergent Intron Conservation in the Mitochondrial nad2 Gene: Signatures for the Three Bryophyte Classes (Mosses, Liverworts, and Hornworts) and the Lycophytes , 2002, Journal of Molecular Evolution.
[75] E. Koonin,et al. The role of lineage-specific gene family expansion in the evolution of eukaryotes. , 2002, Genome research.
[76] D. Bouchez,et al. A Novel Family of Calmodulin-binding Transcription Activators in Multicellular Organisms* , 2002, The Journal of Biological Chemistry.
[77] Huanming Yang,et al. A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica) , 2002, Science.
[78] A. Oliphant,et al. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). , 2002, Science.
[79] R. Copley,et al. DDT -- a novel domain in different transcription and chromosome remodeling factors. , 2001, Trends in biochemical sciences.
[80] S. Carroll. Chance and necessity: the evolution of morphological complexity and diversity , 2001, Nature.
[81] R. R. Samaha,et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. , 2000, Science.
[82] M. Lynch,et al. The evolutionary fate and consequences of duplicate genes. , 2000, Science.
[83] Z. Liu,et al. LEUNIG, a putative transcriptional corepressor that regulates AGAMOUS expression during flower development. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[84] H. Saedler,et al. MADS-Box gene diversity in seed plants 300 million years ago. , 2000, Molecular biology and evolution.
[85] T. Eulgem,et al. The WRKY superfamily of plant transcription factors. , 2000, Trends in plant science.
[86] J. Bowman,et al. The YABBY gene family and abaxial cell fate. , 2000, Current opinion in plant biology.
[87] I. Winicov. Alfin1 transcription factor overexpression enhances plant root growth under normal and saline conditions and improves salt tolerance in alfalfa , 2000, Planta.
[88] M. Takemura,et al. Characterization of a Novel Gene Encoding a Putative Single Zinc-finger Protein, ZIM, Expressed during the Reproductive Phase in Arabidopsis thaliana , 2000, Bioscience, biotechnology, and biochemistry.
[89] H. Kranz,et al. c-MYB oncogene-like genes encoding three MYB repeats occur in all major plant lineages. , 2000, The Plant journal : for cell and molecular biology.
[90] Claudia Kappen,et al. The Homeodomain: An Ancient Evolutionary Motif in Animals and Plants , 2000, Comput. Chem..
[91] K. Yamato,et al. Comparison of expressed sequence tags from male and female sexual organs of Marchantia polymorpha. , 2000, DNA research : an international journal for rapid publication of reports on genes and genomes.
[92] P. Sieber,et al. Molecular analysis of NOZZLE, a gene involved in pattern formation and early sporogenesis during sex organ development in Arabidopsis thaliana. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[93] E. Grotewold,et al. Maize R2R3 Myb genes: Sequence analysis reveals amplification in the higher plants. , 1999, Genetics.
[94] B. Snel,et al. Domains in plexins: links to integrins and transcription factors. , 1999, Trends in biochemical sciences.
[95] T. MacRae,et al. Transcription factors and their genes in higher plants functional domains, evolution and regulation. , 1999, European journal of biochemistry.
[96] G. Angenent,et al. Arabidopsis STERILE APETALA, a multifunctional gene regulating inflorescence, flower, and ovule development. , 1999, Genes & development.
[97] I. Capesius,et al. Plant Mitochondrial RNA Editing , 1999, Journal of Molecular Evolution.
[98] K. Yamato,et al. Expressed sequence tags from immature female sexual organ of a liverwort, Marchantia polymorpha. , 1999, DNA research : an international journal for rapid publication of reports on genes and genomes.
[99] J. Ecker,et al. Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1. , 1998, Genes & development.
[100] D. Weigel,et al. A genetic framework for floral patterning , 1998, Nature.
[101] Yangrae Cho,et al. The gain of three mitochondrial introns identifies liverworts as the earliest land plants , 1998, Nature.
[102] G. Hagen,et al. The ARF family of transcription factors and their role in plant hormone-responsive transcription , 1998, Cellular and Molecular Life Sciences CMLS.
[103] E. Meyerowitz,et al. The AP2/EREBP family of plant transcription factors. , 1998, Biological chemistry.
[104] M. Van Montagu,et al. The trihelix DNA-binding motif in higher plants is not restricted to the transcription factors GT-1 and GT-2. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[105] Peter R. Crane,et al. The origin and early evolution of plants on land , 1997, Nature.
[106] C. Martin,et al. MYB transcription factors in plants. , 1997, Trends in genetics : TIG.
[107] J. Lipsick. One billion years of Myb. , 1996, Oncogene.
[108] M. Purugganan,et al. Molecular evolution of flower development: diversification of the plant MADS-box regulatory gene family. , 1995, Genetics.
[109] F. Katagiri,et al. Plant transcription factors: present knowledge and future challenges. , 1992, Trends in genetics : TIG.
[110] F. Wann. SOME OF THE FACTORS INVOLVED IN THE SEXUAL REPRODUCTION OF MARCHANTIA POLYMORPHA , 1925 .