The crystal structure of Vibrio cholerae (6-4) photolyase reveals interactions with cofactors and a DNA-binding region

[1]  E. Karaca,et al.  Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source , 2023, bioRxiv.

[2]  E. Karaca,et al.  Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight” , 2022, bioRxiv.

[3]  I. Kavakli,et al.  Identification and characterization of a new class of (6-4) photolyase from Vibrio cholerae. , 2019, Biochemistry.

[4]  I. Kavakli,et al.  DNA repair by photolyases. , 2019, Advances in protein chemistry and structural biology.

[5]  Lijuan Wang,et al.  Photolyase: Dynamics and electron-transfer mechanisms of DNA repair. , 2017, Archives of biochemistry and biophysics.

[6]  I. Kavakli,et al.  MerR and ChrR mediate blue light induced photo-oxidative stress response at the transcriptional level in Vibrio cholerae , 2017, Scientific Reports.

[7]  Torsten Schwede,et al.  The SWISS-MODEL Repository—new features and functionality , 2016, Nucleic Acids Res..

[8]  I. Kavakli,et al.  The Photolyase/Cryptochrome Family of Proteins as DNA Repair Enzymes and Transcriptional Repressors , 2017, Photochemistry and photobiology.

[9]  Nuri Ozturk.  Phylogenetic and Functional Classification of the Photolyase/Cryptochrome Family , 2017, Photochemistry and photobiology.

[10]  A. Dreuw,et al.  Insights into Light‐driven DNA Repair by Photolyases: Challenges and Opportunities for Electronic Structure Theory , 2017, Photochemistry and photobiology.

[11]  A. Sancar.  Mechanisms of DNA Repair by Photolyase and Excision Nuclease (Nobel Lecture). , 2016, Angewandte Chemie.

[12]  D. Zhong.  Electron transfer mechanisms of DNA repair by photolyase. , 2015, Annual review of physical chemistry.

[13]  H. Yamada,et al.  Computational Study on the Mechanism of the Electron-Transfer-Induced Repair of the (6–4) T–T Photoproduct of DNA by Photolyase: Possibility of a Radical Cation Pathway , 2014 .

[14]  P. Scheerer,et al.  Crystal structure of a prokaryotic (6-4) photolyase with an Fe-S cluster and a 6,7-dimethyl-8-ribityllumazine antenna chromophore , 2013, Proceedings of the National Academy of Sciences.

[15]  I. Kavakli,et al.  Purification and characterization of five members of photolyase/cryptochrome family from Cyanidioschyzon merolae. , 2012, Plant science : an international journal of experimental plant biology.

[16]  G. Klug,et al.  CryB from Rhodobacter sphaeroides: a unique class of cryptochromes with new cofactors , 2012, EMBO reports.

[17]  R. Rosen,et al.  A Photolyase-Like Protein from Agrobacterium tumefaciens with an Iron-Sulfur Cluster , 2011, PloS one.

[18]  T. Ritz,et al.  The cryptochromes: blue light photoreceptors in plants and animals. , 2011, Annual review of plant biology.

[19]  A. Sancar,et al.  Dynamics and Mechanism of Repair of UV-induced (6-4) Photoproduct by Photolyase , 2010, Nature.

[20]  Randy J. Read,et al.  Acta Crystallographica Section D Biological , 2003 .

[21]  G. Klug,et al.  A cryptochrome‐like protein is involved in the regulation of photosynthesis genes in Rhodobacter sphaeroides , 2009, Molecular microbiology.

[22]  J. Tainer,et al.  Functional motifs in the (6-4) photolyase crystal structure make a comparative framework for DNA repair photolyases and clock cryptochromes , 2009, Proceedings of the National Academy of Sciences.

[23]  I. Schlichting,et al.  Crystal structure and mechanism of a DNA (6-4) photolyase. , 2008, Angewandte Chemie.

[24]  I. Kavakli,et al.  Purification and characterization of a type III photolyase from Caulobacter crescentus. , 2008, Biochemistry.

[25]  Randy J. Read,et al.  Phaser crystallographic software , 2007, Journal of applied crystallography.

[26]  A. Sancar,et al.  A cryptochrome/photolyase class of enzymes with single-stranded DNA-specific photolyase activity , 2006, Proceedings of the National Academy of Sciences.

[27]  Kevin Cowtan,et al.  research papers Acta Crystallographica Section D Biological , 2005 .

[28]  I. Kavakli,et al.  Analysis of the role of intraprotein electron transfer in photoreactivation by DNA photolyase in vivo. , 2004, Biochemistry.

[29]  A. Sancar.  Photolyase and cryptochrome blue-light photoreceptors. , 2004, Advances in protein chemistry.

[30]  I. Kavakli,et al.  Purification and Characterization of Three Members of the Photolyase/Cryptochrome Family Blue-light Photoreceptors from Vibrio cholerae* , 2003, Journal of Biological Chemistry.

[31]  Aziz Sancar,et al.  Structure and function of DNA photolyase and cryptochrome blue-light photoreceptors. , 2003, Chemical reviews.

[32]  S. Yokoyama,et al.  Crystal structure of thermostable DNA photolyase: Pyrimidine-dimer recognition mechanism , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[33]  T. Todo,et al.  Role of Two Histidines in the (6-4) Photolyase Reaction* , 2001, The Journal of Biological Chemistry.

[34]  A. Yasui,et al.  Crystal structure of DMA photolyase from Anacystis nidulans , 1997, Nature Structural Biology.

[35]  J. Deisenhofer,et al.  Crystal structure of DNA photolyase from Escherichia coli. , 1995, Science.