Video multitracking of fish behaviour: a synthesis and future perspectives
暂无分享,去创建一个
Pascal Poncin | Mathieu Denoël | Johann Delcourt | Marc Ylieff | P. Poncin | M. Denoël | M. Ylieff | J. Delcourt | Mathieu Denoël
[1] Craig W. Reynolds. Flocks, herds, and schools: a distributed behavioral model , 1987, SIGGRAPH.
[2] G D Ruxton,et al. Fish shoal composition: mechanisms and constraints , 2000, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[3] Ramakant Nevatia,et al. Tracking multiple humans in crowded environment , 2004, CVPR 2004.
[4] T. Pitcher,et al. Fish school density and volume , 1979 .
[5] I. Aoki. A simulation study on the schooling mechanism in fish. , 1982 .
[6] C. Breder. Equations Descriptive of Fish Schools and Other Animal Aggregations , 1954 .
[7] J. Boal,et al. Social Behaviour of Individual Oval Squids (Cephalopoda, Teuthoidea, Loliginidae, Sepioteuthis lessoniana) within a Captive School , 2010 .
[8] Esa Ranta,et al. Size‐assortative Schooling in Free‐ranging Sticklebacks , 2010 .
[9] Allan V. Kalueff,et al. Understanding behavioral and physiological phenotypes of stress and anxiety in zebrafish , 2009, Behavioural Brain Research.
[10] A. Bisazza,et al. Ontogeny of Numerical Abilities in Fish , 2010, PloS one.
[11] I. Couzin,et al. Effective leadership and decision-making in animal groups on the move , 2005, Nature.
[12] Noam Miller,et al. Quantification of shoaling behaviour in zebrafish (Danio rerio) , 2007, Behavioural Brain Research.
[13] Rui F. Oliveira,et al. A simple method using a single video camera to determine the three-dimensional position of a fish , 1994 .
[14] Frank Dellaert,et al. MCMC Data Association and Sparse Factorization Updating for Real Time Multitarget Tracking with Merged and Multiple Measurements , 2006, IEEE Transactions on Pattern Analysis and Machine Intelligence.
[15] W. Foster,et al. Group transmission of predator avoidance behaviour in a marine insect: The trafalgar effect , 1981, Animal Behaviour.
[16] Michael R. Taylor,et al. Pentylenetetrazole induced changes in zebrafish behavior, neural activity and c-fos expression , 2005, Neuroscience.
[17] C. Hemelrijk,et al. Density distribution and size sorting in fish schools: an individual-based model , 2005 .
[18] Pascal Poncin,et al. A video multitracking system for quantification of individual behavior in a large fish shoal: Advantages and limits , 2009, Behavior research methods.
[19] Joseph Katz,et al. Digital holographic microscopy reveals prey-induced changes in swimming behavior of predatory dinoflagellates , 2007, Proceedings of the National Academy of Sciences.
[20] D. Weihs. Hydromechanics of Fish Schooling , 1973, Nature.
[21] Frank Dellaert,et al. MCMC-based particle filtering for tracking a variable number of interacting targets , 2005, IEEE Transactions on Pattern Analysis and Machine Intelligence.
[22] Pascal Poncin,et al. Comparing the EthoVision 2.3 system and a new computerized multitracking prototype system to measure the swimming behavior in fry fish , 2006, Behavior research methods.
[23] T. Pitcher. Functions of Shoaling Behaviour in Teleosts , 1986 .
[24] A. Rubinstein,et al. Zebrafish assays for drug toxicity screening , 2006, Expert opinion on drug metabolism & toxicology.
[25] J. Watson,et al. Three‐dimensional spatial coordinates of individual plankton determined using underwater hologrammetry , 2000 .
[26] F Mondada,et al. Social Integration of Robots into Groups of Cockroaches to Control Self-Organized Choices , 2007, Science.
[27] P. Poncin,et al. Quantifying spontaneous swimming activity in fish with a computerized color video tracking system, a laboratory device using last imaging techniques , 2003, Fish Physiology and Biochemistry.
[28] R. E. Blaser,et al. Behavioral measures of anxiety in zebrafish (Danio rerio) , 2010, Behavioural Brain Research.
[29] N F Hughes,et al. New techniques for 3-D video tracking of fish swimming movements in still or flowing water , 1996 .
[30] François Gerlotto,et al. Three dimensional structure and morphology of pelagic fish schools , 2010 .
[31] J. Godin,et al. Predator avoidance and school size in a cyprinodontid fish, the banded killifish (Fundulus diaphanus Lesueur) , 2004, Behavioral Ecology and Sociobiology.
[32] Tetsu Nemoto,et al. A computer image processing system for quantification of zebrafish behavior , 2004, Journal of Neuroscience Methods.
[33] P. Poncin,et al. Impact implantation of a transmitter on Sarpa salpa behaviour: study with a computerized video tracking system , 2005 .
[34] V. Gómez,et al. An automatic colour-based computer vision algorithm for tracking the position of piglets , 2009 .
[35] R. Gerlai,et al. Alarm substance induced behavioral responses in zebrafish (Danio rerio) , 2008, Behavioural Brain Research.
[36] J. Hunter,et al. Procedure for Analysis of Schooling Behavior , 1966 .
[37] S. Guo,et al. Linking genes to brain, behavior and neurological diseases: what can we learn from zebrafish? , 2004, Genes, brain, and behavior.
[38] J. Krause,et al. Mixed-species shoaling in fish: the sensory mechanisms and costs of shoal choice , 2002, Behavioral Ecology and Sociobiology.
[39] C. Anderson. Self-Organization in Relation to Several Similar Concepts: Are the Boundaries to Self-Organization Indistinct? , 2002, The Biological Bulletin.
[40] J. Venkateswara Rao,et al. Locomotor Behavioral Response of Mosquitofish (Gambusia affinis) to Subacute Mercury Stress Monitored by Video Tracking System , 2007, Drug and chemical toxicology.
[41] Pascal Poncin,et al. Cumulative effects of road de-icing salt on amphibian behavior. , 2010, Aquatic toxicology.
[42] J. Krause,et al. Social organisation, shoal structure and information transfer , 2003 .
[43] T. Vicsek,et al. Collective behavior of interacting self-propelled particles , 2000, cond-mat/0611742.
[44] David Lentink,et al. Automated visual tracking for studying the ontogeny of zebrafish swimming , 2008, Journal of Experimental Biology.
[45] T. Pitcher,et al. Predator-avoidance behaviours of sand-eel schools: why schools seldom split , 1983 .
[46] Iain D. Couzin,et al. The effects of parasitism and body length on positioning within wild fish shoals , 2001 .
[47] T. J. Pitcher,et al. A Periscopic Method for Determining the Three-Dimensional Positions of Fish in Schools , 1975 .
[48] Petter Fossum,et al. Pretty patterns but a simple strategy: predator- prey interactions between juvenile herring and Atlantic puffins observed with multibeam sonar , 2001 .
[49] Y. Sawada,et al. Ontogenetic changes in schooling behaviour during larval and early juvenile stages of Pacific bluefin tuna Thunnus orientalis. , 2010, Journal of fish biology.
[50] Robert Gerlai,et al. Zebra Fish: An Uncharted Behavior Genetic Model , 2003, Behavior genetics.
[51] N. Tinbergen. On aims and methods of Ethology , 2010 .
[52] Ehud Rivlin,et al. Classification of Moving Targets Based on Motion and Appearance , 2003, BMVC.
[53] Claire Detrain,et al. Self-amplification as a source of interindividual variability: shelter selection in cockroaches. , 2009, Journal of insect physiology.
[54] G. Parisi,et al. Scale-free correlations in starling flocks , 2009, Proceedings of the National Academy of Sciences.
[55] D. Brenneman,et al. Reduction of Submissive Behavior Model for antidepressant drug activity testing: study using a video-tracking system , 2005, Behavioural pharmacology.
[56] Tsutomu Takagi,et al. Video analysis of fish schooling behavior in finite space using a mathematical model , 2003 .
[57] Mathieu Denoël,et al. The use of visual and automatized behavioral markers to assess methodologies: a study case on PIT-tagging in the Alpine newt , 2011, Behavior research methods.
[58] R. W. Blake,et al. Functional design and burst-and-coast swimming in fishes , 1983 .
[59] H. A. Baldwin,et al. Methods for measuring the three-dimensional structure of fish schools. , 1965, Animal behaviour.
[60] L P Noldus,et al. EthoVision: A versatile video tracking system for automation of behavioral experiments , 2001, Behavior research methods, instruments, & computers : a journal of the Psychonomic Society, Inc.
[61] Su Guo,et al. Preference for ethanol in zebrafish following a single exposure , 2011, Behavioural Brain Research.
[62] A. S. Kane,et al. Quantitative movement analysis of social behavior in mummichog, Fundulus heteroclitus , 2006, Journal of Ethology.
[63] T. J. Pitcher,et al. The three-dimensional structure of schools in the minnow, Phoxinus phoxinus (L.) , 1973 .
[64] I. Couzin,et al. Self-Organization and Collective Behavior in Vertebrates , 2003 .
[65] George V Lauder,et al. Hydrodynamics of caudal fin locomotion by chub mackerel, Scomber japonicus (Scombridae). , 2002, The Journal of experimental biology.
[66] Robert Gerlai,et al. Oscillations in shoal cohesion in zebrafish (Danio rerio) , 2008, Behavioural Brain Research.
[67] Christophe Becco,et al. Experimental evidences of a structural and dynamical transition in fish school , 2006 .
[68] L. J. Purdy. A piece of my mind. Predator and prey. , 1990 .
[69] Guy Theraulaz,et al. Self-Organization in Biological Systems , 2001, Princeton studies in complexity.
[70] Jens Krause,et al. Shoal choice in zebrafish, Danio rerio: the influence of shoal size and activity , 2001, Animal Behaviour.
[71] Steven V. Viscido,et al. Self-Organized Fish Schools: An Examination of Emergent Properties , 2002, The Biological Bulletin.
[72] Michael Sfakiotakis,et al. Review of fish swimming modes for aquatic locomotion , 1999 .
[73] D. Dewsbury,et al. The proximate and the ultimate: past, present, and future , 1999, Behavioural Processes.
[74] A. Marshall. The Unity of Nature: Wholeness and Disintegration in Ecology and Science , 2002 .
[75] Steven V. Viscido,et al. Individual behavior and emergent properties of fish schools: a comparison of observation and theory , 2004 .
[76] Daniel Cerutti,et al. Zebrafish provide a sensitive model of persisting neurobehavioral effects of developmental chlorpyrifos exposure: comparison with nicotine and pilocarpine effects and relationship to dopamine deficits. , 2010, Neurotoxicology and teratology.
[77] A. Peter Klimley,et al. Schooling in Sphyrna lewini, a Species with Low Risk of Predation: a Non‐egalitarian State , 1985 .
[78] D. Sumpter,et al. Inferring the rules of interaction of shoaling fish , 2011, Proceedings of the National Academy of Sciences.
[79] Hidehiko Okabe,et al. A method for reconstructing three-dimensional positions of swarming mosquitoes , 1994, Journal of Insect Behavior.
[80] D. Chivers,et al. Overriding the oddity effect in mixed-species aggregations: group choice by armored and nonarmored prey , 2003 .
[81] Pascal Poncin,et al. Video tracking in the extreme: A new possibility for tracking nocturnal underwater transparent animals with fluorescent elastomer tags , 2011, Behavior research methods.
[82] Richard E Peterson,et al. Zebrafish as a model vertebrate for investigating chemical toxicity. , 2005, Toxicological sciences : an official journal of the Society of Toxicology.
[83] Jens Krause,et al. Repeated measures of shoaling tendency in zebrafish (Danio rerio) and other small teleost fishes , 2006, Nature Protocols.
[84] Michael Isard,et al. Tracking loose-limbed people , 2004, CVPR 2004.
[85] J. Krause,et al. Body length assortative shoaling in the European minnow, Phoxinus phoxinus , 2001, Animal Behaviour.
[86] Pascal Poncin,et al. Quantifying spontaneous swimming activity in fish with the Ethovision Color-Pro computerized video tracking system, a laboratory device based on digital imaging techniques. , 2003 .
[87] Jacques Verly,et al. The State of the Art in Multiple Object Tracking Under Occlusion in Video Sequences , 2003 .
[88] Joseph Katz,et al. On the spatial distribution and nearest neighbor distance between particles in the water column determined from in situ holographic measurements , 2006 .
[89] C. Haddad,et al. Schooling and swimming behaviors of Hyla semilineata tadpoles (Anura, Hylidae) , 2002 .
[90] G. Parisi,et al. Interaction ruling animal collective behavior depends on topological rather than metric distance: Evidence from a field study , 2007, Proceedings of the National Academy of Sciences.
[91] Siddharth Gaikwad,et al. Measuring behavioral and endocrine responses to novelty stress in adult zebrafish , 2010, Nature Protocols.
[92] Charlotte K. Hemelrijk,et al. Emergence of Oblong School Shape: Models and Empirical Data of Fish , 2010 .
[93] G. Lauder,et al. Function of the heterocercal tail in sharks: quantitative wake dynamics during steady horizontal swimming and vertical maneuvering. , 2002, The Journal of experimental biology.
[94] Adhir K Basu,et al. Introduction to Stochastic Process , 2002 .
[95] Charlotte K. Hemelrijk,et al. Leadership in fish shoals , 2000 .
[96] Tadashi Inagaki,et al. Measurements of the three-dimensional structure of free-swimming pelagic fish schools in a natural environment , 1986 .
[97] School formation and concurrent developmental changes in carangid fish with reference to dietary conditions , 1998 .
[98] Joseph A. Brown,et al. A new technique to gather 3-D spatial information using a single camera , 2005 .
[99] A grid‐net technique for the analysis of fish positions within free‐ranging shoals , 2001 .
[100] Akira Muto,et al. Behavioral screening assays in zebrafish. , 2004, Methods in cell biology.
[101] Magnus Egerstedt,et al. What Are the Ants Doing? Vision-Based Tracking and Reconstruction of Control Programs , 2005, Proceedings of the 2005 IEEE International Conference on Robotics and Automation.
[102] A. Manica,et al. Shoaling preferences in decapod crustacea , 2007, Animal Behaviour.
[103] S. G. Reebs,et al. INFLUENCE OF BODY SIZE ON LEADERSHIP IN SHOALS OF GOLDEN SHINERS, NOTEMIGONUS CRYSOLEUCAS , 2001 .
[104] M. Keenleyside. Cichlid fishes : behaviour, ecology and evolution , 1993 .
[105] M. Keenleyside,et al. Some Aspects of the Schooling Behaviour of Fish , 1955 .
[106] Andrew Blake,et al. A Probabilistic Exclusion Principle for Tracking Multiple Objects , 2000, Proceedings of the Seventh IEEE International Conference on Computer Vision.
[107] Wei Weng,et al. Catadioptric stereo-vision system for the real-time monitoring of 3D behavior in aquatic animals , 2007, Physiology & Behavior.
[108] S. G. Reebs,et al. Individual leadership and boldness in shoals of golden shiners (Notemigonus crysoleucas) , 2006 .
[109] W. Stanford,et al. EOS lentiviral vector selection system for human induced pluripotent stem cells , 2009, Nature Protocols.
[110] Andrew S. Kane,et al. Fish models in behavioral toxicology: Automated techniques, updates and perspectives , 2005 .
[111] I. Couzin,et al. Inferring the structure and dynamics of interactions in schooling fish , 2011, Proceedings of the National Academy of Sciences.
[112] Hironobu Fujiyoshi,et al. Moving target classification and tracking from real-time video , 1998, Proceedings Fourth IEEE Workshop on Applications of Computer Vision. WACV'98 (Cat. No.98EX201).
[113] Gregory D. Hager,et al. Probabilistic Data Association Methods for Tracking Complex Visual Objects , 2001, IEEE Trans. Pattern Anal. Mach. Intell..
[114] S. Nakayama,et al. Development of schooling behavior in Spanish mackerel Scomberomorus niphonius during early ontogeny , 2003 .
[115] Rahul Singh,et al. Automated image-based phenotypic screening for high-throughput drug discovery , 2009, 2009 22nd IEEE International Symposium on Computer-Based Medical Systems.
[116] Nathaniel K. Newlands,et al. Measurement of the size, shape and structure of Atlantic bluefin tuna schools in the open ocean , 2008 .
[117] Kevin N. Laland,et al. Social learning in fishes : a review , 2003 .
[118] I. Aoki. Experimental and theoretical studies on schooling in fish. II. Internal dynamics of fish schools in relation to inter-fish distance. , 1984 .
[119] T. Pitcher,et al. The three-dimensional structure of fish schools , 1980, Behavioral Ecology and Sociobiology.
[120] C. Lord,et al. Behavioural phenotyping assays for mouse models of autism , 2010, Nature Reviews Neuroscience.
[121] J. Krause,et al. Cross–species familiarity in shoaling fishes , 2003, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[122] Serge J. Belongie,et al. Tracking multiple mouse contours (without too many samples) , 2005, 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05).
[123] I. Couzin,et al. Collective memory and spatial sorting in animal groups. , 2002, Journal of theoretical biology.
[124] Françoise Dibos,et al. Displacement Following of Hidden Objects in a Video Sequence , 2004, International Journal of Computer Vision.
[125] Michael Isard,et al. Contour Tracking by Stochastic Propagation of Conditional Density , 1996, ECCV.
[126] T. J. Roper,et al. Group decision-making in animals , 2003, Nature.
[127] Alexander F. Schier,et al. Hypocretin/Orexin Overexpression Induces An Insomnia-Like Phenotype in Zebrafish , 2006, The Journal of Neuroscience.
[128] Michael Isard,et al. BraMBLe: a Bayesian multiple-blob tracker , 2001, Proceedings Eighth IEEE International Conference on Computer Vision. ICCV 2001.