Highly conserved regions in Ebola virus RNA dependent RNA polymerase may be act as a universal novel peptide vaccine target: a computational approach

[1]  Cong Zhang,et al.  SoftPanel: a website for grouping diseases and related disorders for generation of customized panels , 2016, BMC Bioinformatics.

[2]  Anna Popova,et al.  West African Ebola crisis and orphans , 2015, The Lancet.

[3]  Md. Anayet Hasan,et al.  A comprehensive immunoinformatics and target site study revealed the corner-stone toward Chikungunya virus treatment , 2015, Molecular Immunology.

[4]  Mohammad Uzzal Hossain,et al.  Advances and Applications in Bioinformatics and Chemistry Dovepress Identification of Highly Conserved Regions in L-segment of Crimean–congo Hemorrhagic Fever Virus and Immunoinformatic Prediction about Potential Novel Vaccine , 2022 .

[5]  Stephan Günther,et al.  Emergence of Zaire Ebola virus disease in Guinea. , 2014, The New England journal of medicine.

[6]  Thomas Kenyon,et al.  Ebola 2014--new challenges, new global response and responsibility. , 2014, The New England journal of medicine.

[7]  S. Chakraborty,et al.  In silico predicted mycobacterial epitope elicits in vitro T-cell responses. , 2014, Molecular immunology.

[8]  Arafat Rahman Oany,et al.  Design of an epitope-based peptide vaccine against spike protein of human coronavirus: an in silico approach , 2014, Drug design, development and therapy.

[9]  Derek Gatherer,et al.  The 2014 Ebola virus disease outbreak in West Africa. , 2014, The Journal of general virology.

[10]  Y H Li,et al.  Evolutionary history of Ebola virus , 2013, Epidemiology and Infection.

[11]  J. Choi,et al.  Emerging Targets and Novel Approaches to Ebola Virus Prophylaxis and Treatment , 2013, BioDrugs.

[12]  Md. Anayet Hasan,et al.  A Computational Assay to Design an Epitope-Based Peptide Vaccine Against Saint Louis Encephalitis Virus , 2013, Bioinformatics and biology insights.

[13]  H. Feldmann,et al.  Current ebola vaccines , 2012, Expert opinion on biological therapy.

[14]  Marco Biasini,et al.  Toward the estimation of the absolute quality of individual protein structure models , 2010, Bioinform..

[15]  Morten Nielsen,et al.  Peptide binding predictions for HLA DR, DP and DQ molecules , 2010, BMC Bioinformatics.

[16]  Jens H. Kuhn,et al.  Proposal for a revised taxonomy of the family Filoviridae: classification, names of taxa and viruses, and virus abbreviations , 2010, Archives of Virology.

[17]  E. Domingo,et al.  Origin and Evolution of Viruses , 2010, Virus Genes.

[18]  Joo Chuan Tong,et al.  AllerHunter: A SVM-Pairwise System for Assessment of Allergenicity and Allergic Cross-Reactivity in Proteins , 2009, PloS one.

[19]  R. Jacobson,et al.  Application of pharmacogenomics to vaccines. , 2009, Pharmacogenomics.

[20]  Heinz Feldmann,et al.  Single-Injection Vaccine Protects Nonhuman Primates against Infection with Marburg Virus and Three Species of Ebola Virus , 2009, Journal of Virology.

[21]  Geoffrey J. Barton,et al.  Jalview Version 2—a multiple sequence alignment editor and analysis workbench , 2009, Bioinform..

[22]  Ellis L. Reinherz,et al.  PVS: a web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery , 2008, Nucleic Acids Res..

[23]  John Sidney,et al.  A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus Approach , 2008, PLoS Comput. Biol..

[24]  Morten Nielsen,et al.  Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction , 2007, BMC Bioinformatics.

[25]  Wei Li,et al.  Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines , 2007, BMC Bioinformatics.

[26]  O. Lund,et al.  NetMHCpan, a Method for Quantitative Predictions of Peptide Binding to Any HLA-A and -B Locus Protein of Known Sequence , 2007, PloS one.

[27]  G. Chang,et al.  Mutation analysis of the fusion domain region of St. Louis encephalitis virus envelope protein. , 2007, Virology.

[28]  Irini A. Doytchinova,et al.  BMC Bioinformatics BioMed Central Methodology article VaxiJen: a server for prediction of protective antigens, tumour , 2007 .

[29]  John Sidney,et al.  Predicting population coverage of T-cell epitope-based diagnostics and vaccines , 2006, BMC Bioinformatics.

[30]  Torsten Schwede,et al.  BIOINFORMATICS Bioinformatics Advance Access published November 12, 2005 The SWISS-MODEL Workspace: A web-based environment for protein structure homology modelling , 2022 .

[31]  M. Roncarolo,et al.  CD4+ regulatory T cells: mechanisms of induction and effector function. , 2005, Autoimmunity reviews.

[32]  Barry S. Hewlett,et al.  Providing Care and Facing Death: Nursing During Ebola Outbreaks in Central Africa , 2005, Journal of transcultural nursing : official journal of the Transcultural Nursing Society.

[33]  C. Guttmann,et al.  A highly immunogenic trivalent T cell receptor peptide vaccine for multiple sclerosis , 2005, Multiple sclerosis.

[34]  M. Diamond,et al.  Neuronal CXCL10 Directs CD8+ T-Cell Recruitment and Control of West Nile Virus Encephalitis , 2005, Journal of Virology.

[35]  Alessandro Sette,et al.  Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method , 2005, BMC Bioinformatics.

[36]  H. Robinson,et al.  T cell vaccines for microbial infections , 2005, Nature Medicine.

[37]  W. Karesh,et al.  Wild Animal Mortality Monitoring and Human Ebola Outbreaks, Gabon and Republic of Congo, 2001–2003 , 2005, Emerging infectious diseases.

[38]  Bernard F. Buxton,et al.  The DISOPRED server for the prediction of protein disorder , 2004, Bioinform..

[39]  Gajendra P.S. Raghava,et al.  Prediction of CTL epitopes using QM, SVM and ANN techniques. , 2004, Vaccine.

[40]  Michael S. Diamond,et al.  Role of CD8+ T Cells in Control of West Nile Virus Infection , 2004, Journal of Virology.

[41]  J. Hyman,et al.  The basic reproductive number of Ebola and the effects of public health measures: the cases of Congo and Uganda. , 2004, Journal of theoretical biology.

[42]  R. Hubbard,et al.  Vaccination and allergic disease: a birth cohort study. , 2004, American journal of public health.

[43]  Marcel Tanner,et al.  Representation of authors and editors from countries with different human development indexes in the leading literature on tropical medicine: survey of current evidence , 2004, BMJ : British Medical Journal.

[44]  Qing He,et al.  Antibody regulation of T-cell immunity: implications for vaccine strategies against intracellular pathogens , 2004, Expert review of vaccines.

[45]  P. Formenty,et al.  Multiple Ebola Virus Transmission Events and Rapid Decline of Central African Wildlife , 2004, Science.

[46]  Alessandro Sette,et al.  Development of a DNA Vaccine Designed to Induce Cytotoxic T Lymphocyte Responses to Multiple Conserved Epitopes in HIV-1 1 , 2003, The Journal of Immunology.

[47]  A. Sette,et al.  Epitope-based vaccines: an update on epitope identification, vaccine design and delivery. , 2003, Current opinion in immunology.

[48]  Heinz Feldmann,et al.  Ebola virus: from discovery to vaccine , 2003, Nature Reviews Immunology.

[49]  S. Nichol,et al.  Analysis of the role of predicted RNA secondary structures in Ebola virus replication. , 2003, Virology.

[50]  Vladimir Brusic,et al.  Computational immunology: The coming of age , 2002, Immunology and cell biology.

[51]  J Alexander,et al.  Optimizing vaccine design for cellular processing, MHC binding and TCR recognition. , 2002, Tissue antigens.

[52]  B. Nayak,et al.  Epitope Recognition by Diverse Antibodies Suggests Conformational Convergence in an Antibody Response1 , 2002, The Journal of Immunology.

[53]  H. Feldmann,et al.  Biosynthesis and role of filoviral glycoproteins. , 2001, The Journal of general virology.

[54]  François Spertini,et al.  A synthetic malaria vaccine elicits a potent CD8+ and CD4+ T lymphocyte immune response in humans. Implications for vaccination strategies , 2001, European journal of immunology.

[55]  A. Sanchez,et al.  Development of a preventive vaccine for Ebola virus infection in primates , 2000, Nature.

[56]  Stephan Becker,et al.  Comparison of the Transcription and Replication Strategies of Marburg Virus and Ebola Virus by Using Artificial Replication Systems , 1999, Journal of Virology.

[57]  V. Blinov,et al.  Characterization of the L gene and 5' trailer region of Ebola virus. , 1999, The Journal of general virology.

[58]  J. Leduc,et al.  An introduction to Ebola: the virus and the disease. , 1999, The Journal of infectious diseases.

[59]  H. Klenk,et al.  Three of the Four Nucleocapsid Proteins of Marburg Virus, NP, VP35, and L, Are Sufficient To Mediate Replication and Transcription of Marburg Virus-Specific Monocistronic Minigenomes , 1998, Journal of Virology.

[60]  A. Sanchez,et al.  A system for functional analysis of Ebola virus glycoprotein. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[61]  J. Thornton,et al.  AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR , 1996, Journal of biomolecular NMR.

[62]  M. Karplus,et al.  Evaluation of comparative protein modeling by MODELLER , 1995, Proteins.

[63]  J. Thompson,et al.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.

[64]  I. Wilson,et al.  Structural evidence for induced fit as a mechanism for antibody-antigen recognition. , 1994, Science.

[65]  Ronald N. Germain,et al.  MHC-dependent antigen processing and peptide presentation: Providing ligands for T lymphocyte activation , 1994, Cell.

[66]  T. Blundell,et al.  Comparative protein modelling by satisfaction of spatial restraints. , 1993, Journal of molecular biology.

[67]  P. Tongaonkar,et al.  A semi‐empirical method for prediction of antigenic determinants on protein antigens , 1990, FEBS letters.

[68]  N. Tordo,et al.  Sequence comparison of five polymerases (L proteins) of unsegmented negative-strand RNA viruses: theoretical assignment of functional domains. , 1990, The Journal of general virology.

[69]  R. Hodges,et al.  New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites. , 1986, Biochemistry.

[70]  E. Emini,et al.  Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide , 1985, Journal of virology.

[71]  W. Malmquist,et al.  Soluble antigen of bovine viral diarrhea virus , 1965, Archiv für die gesamte Virusforschung.

[72]  M. Koopmans,et al.  Ebola virus disease: a review on epidemiology, symptoms, treatment and pathogenesis. , 2014, The Netherlands journal of medicine.

[73]  A. Elisha,et al.  Ebola Virus Diseases , 2014 .

[74]  O. Lund,et al.  NetMHCpan, a method for MHC class I binding prediction beyond humans , 2008, Immunogenetics.

[75]  Cathy H. Wu,et al.  UniProt: the Universal Protein knowledgebase , 2004, Nucleic Acids Res..

[76]  Li Liao,et al.  Combining Pairwise Sequence Similarity and Support Vector Machines for Detecting Remote Protein Evolutionary and Structural Relationships , 2003, J. Comput. Biol..

[77]  Andrew Rambaut,et al.  Inferring the rate and time-scale of dengue virus evolution. , 2003, Molecular biology and evolution.

[78]  A. Sali,et al.  Modeling of loops in protein structures , 2000, Protein science : a publication of the Protein Society.

[79]  H. Feldmann,et al.  The glycoproteins of Marburg and Ebola virus and their potential roles in pathogenesis. , 1999, Archives of virology. Supplementum.

[80]  T. A. Hall,et al.  BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT , 1999 .

[81]  K. Garcia,et al.  Structural basis of T cell recognition. , 1999, Annual review of immunology.

[82]  P. Y. Chou,et al.  Empirical predictions of protein conformation. , 1978, Annual review of biochemistry.