Dynamics of bacterial population growth in biofilms resemble spatial and structural aspects of urbanization

[1]  H. C. van der Mei,et al.  Emergent Properties in Streptococcus mutans Biofilms Are Controlled through Adhesion Force Sensing by Initial Colonizers , 2019, mBio.

[2]  H. Daniell,et al.  Dual-Targeting Approach Degrades Biofilm Matrix and Enhances Bacterial Killing , 2019, Journal of dental research.

[3]  J. Dunkel,et al.  Emergence of three-dimensional order and structure in growing biofilms , 2018, Nature Physics.

[4]  Yong Li,et al.  Topical ferumoxytol nanoparticles disrupt biofilms and prevent tooth decay in vivo via intrinsic catalytic activity , 2018, Nature Communications.

[5]  Xingqun Cheng,et al.  Live and let die: Hydrogen peroxide production by the commensal flora and its role in maintaining a symbiotic microbiome. , 2018, Molecular oral microbiology.

[6]  H. C. van der Mei,et al.  Emergent heterogeneous microenvironments in biofilms: substratum surface heterogeneity and bacterial adhesion force-sensing. , 2018, FEMS microbiology reviews.

[7]  S. Sørensen,et al.  Micro-scale intermixing: a requisite for stable and synergistic co-establishment in a four-species biofilm , 2018, The ISME Journal.

[8]  U. Jenal,et al.  Second messenger–mediated tactile response by a bacterial rotary motor , 2017, Science.

[9]  K. Lampi,et al.  Murein Hydrolase LytF of Streptococcus sanguinis and the Ecological Consequences of Competence Development , 2017, Applied and Environmental Microbiology.

[10]  W. Bowen,et al.  Oral Biofilms: Pathogens, Matrix, and Polymicrobial Interactions in Microenvironments. , 2017, Trends in microbiology.

[11]  Paul Stoodley,et al.  Targeting microbial biofilms: current and prospective therapeutic strategies , 2017, Nature Reviews Microbiology.

[12]  B. Hamaker,et al.  Extracellular DNA and lipoteichoic acids interact with exopolysaccharides in the extracellular matrix of Streptococcus mutans biofilms , 2017, Biofouling.

[13]  E. Wright,et al.  Obstruction of pilus retraction stimulates bacterial surface sensing , 2017, Science.

[14]  D. Krysan,et al.  Candida albicans mannans mediate Streptococcus mutans exoenzyme GtfB binding to modulate cross-kingdom biofilm development in vivo , 2017, PLoS pathogens.

[15]  Gürol M. Süel,et al.  Coupling between distant biofilms and emergence of nutrient time-sharing , 2017, Science.

[16]  Á. Kovács,et al.  The Peculiar Functions of the Bacterial Extracellular Matrix. , 2017, Trends in microbiology.

[17]  Tagbo H. R. Niepa,et al.  Candida albicans stimulates Streptococcus mutans microcolony development via cross-kingdom biofilm-derived metabolites , 2017, Scientific Reports.

[18]  K. Foster,et al.  Microbial competition in porous environments can select against rapid biofilm growth , 2016, Proceedings of the National Academy of Sciences.

[19]  Kenneth M. Yamada,et al.  Dynamic cell-matrix interactions modulate microbial biofilm and tissue 3D microenvironments. , 2016, Current opinion in cell biology.

[20]  Jing Yan,et al.  Vibrio cholerae biofilm growth program and architecture revealed by single-cell live imaging , 2016, Proceedings of the National Academy of Sciences.

[21]  S. Rice,et al.  Biofilms: an emergent form of bacterial life , 2016, Nature Reviews Microbiology.

[22]  Knut Drescher,et al.  Spatial structure, cooperation and competition in biofilms , 2016, Nature Reviews Microbiology.

[23]  R. Korpela,et al.  Interactions between Lactobacillus rhamnosus GG and oral micro-organisms in an in vitro biofilm model , 2016, BMC Microbiology.

[24]  Xuedong Zhou,et al.  l-Arginine Modifies the Exopolysaccharide Matrix and Thwarts Streptococcus mutans Outgrowth within Mixed-Species Oral Biofilms , 2016, Journal of bacteriology.

[25]  Thomas Bjarnsholt,et al.  Role of Multicellular Aggregates in Biofilm Formation , 2016, mBio.

[26]  Bonnie L. Bassler,et al.  Architectural transitions in Vibrio cholerae biofilms at single-cell resolution , 2016, Proceedings of the National Academy of Sciences.

[27]  Xuedong Zhou,et al.  Regulation of oxidative response and extracellular polysaccharide synthesis by a diadenylate cyclase in Streptococcus mutans. , 2016, Environmental microbiology.

[28]  Orkun S. Soyer,et al.  Challenges in microbial ecology: building predictive understanding of community function and dynamics , 2016, The ISME Journal.

[29]  K. Foster,et al.  Experimental evolution in biofilm populations , 2016, FEMS microbiology reviews.

[30]  Blair J. Rossetti,et al.  Biogeography of a human oral microbiome at the micron scale , 2016, Proceedings of the National Academy of Sciences.

[31]  Rosalind J. Allen,et al.  Competition for space during bacterial colonization of a surface , 2015, Journal of The Royal Society Interface.

[32]  Boo Shan Tseng,et al.  Pel is a cationic exopolysaccharide that cross-links extracellular DNA in the Pseudomonas aeruginosa biofilm matrix , 2015, Proceedings of the National Academy of Sciences.

[33]  K. Meyer,et al.  Modeling microbial growth and dynamics , 2015, Applied Microbiology and Biotechnology.

[34]  M. Janczarek,et al.  (1→3)-α-D-Glucan hydrolases in dental biofilm prevention and control: A review. , 2015, International journal of biological macromolecules.

[35]  Gürol M. Süel,et al.  Metabolic codependence gives rise to collective oscillations within biofilms , 2015, Nature.

[36]  K. Dill,et al.  Bacterial growth laws reflect the evolutionary importance of energy efficiency , 2014, Proceedings of the National Academy of Sciences.

[37]  Emmanuelle Gouillart,et al.  scikit-image: image processing in Python , 2014, PeerJ.

[38]  A. Dongari-Bagtzoglou,et al.  Innocent until proven guilty: mechanisms and roles of Streptococcus–Candida interactions in oral health and disease , 2014, Molecular oral microbiology.

[39]  W. Bowen,et al.  Symbiotic Relationship between Streptococcus mutans and Candida albicans Synergizes Virulence of Plaque Biofilms In Vivo , 2014, Infection and Immunity.

[40]  Gregory D. Bixler,et al.  Rice- and butterfly-wing effect inspired self-cleaning and low drag micro/nanopatterned surfaces in water, oil, and air flow. , 2014, Nanoscale.

[41]  Erik Luijten,et al.  Psl trails guide exploration and microcolony formation in early P. aeruginosa biofilms , 2013, Nature.

[42]  Ronn S. Friedlander,et al.  Bacterial flagella explore microscale hummocks and hollows to increase adhesion , 2013, Proceedings of the National Academy of Sciences.

[43]  Bingwen Lu,et al.  The Exopolysaccharide Matrix Modulates the Interaction between 3D Architecture and Virulence of a Mixed-Species Oral Biofilm , 2012, PLoS pathogens.

[44]  Fitnat H. Yildiz,et al.  Molecular Architecture and Assembly Principles of Vibrio cholerae Biofilms , 2012, Science.

[45]  Cristian Picioreanu,et al.  iDynoMiCS: next-generation individual-based modelling of biofilms. , 2011, Environmental microbiology.

[46]  Terence Hwa,et al.  Bacterial growth laws and their applications. , 2011, Current opinion in biotechnology.

[47]  R. Waugh,et al.  Role of Glucosyltransferase B in Interactions of Candida albicans with Streptococcus mutans and with an Experimental Pellicle on Hydroxyapatite Surfaces , 2011, Applied and Environmental Microbiology.

[48]  Sara Mitri,et al.  Social evolution in multispecies biofilms , 2011, Proceedings of the National Academy of Sciences.

[49]  G. Vecchio,et al.  Impact of nanoscale topography on genomics and proteomics of adherent bacteria. , 2011, ACS nano.

[50]  Elena P Ivanova,et al.  The influence of nano-scale surface roughness on bacterial adhesion to ultrafine-grained titanium. , 2010, Biomaterials.

[51]  Matthew R. Parsek,et al.  Assembly and Development of the Pseudomonas aeruginosa Biofilm Matrix , 2009, PLoS pathogens.

[52]  Philip S. Stewart,et al.  Physiological heterogeneity in biofilms , 2008, Nature Reviews Microbiology.

[53]  K. Foster,et al.  Cooperation and conflict in microbial biofilms , 2007, Proceedings of the National Academy of Sciences.

[54]  Arie Shoshani,et al.  Optimizing connected component labeling algorithms , 2005, SPIE Medical Imaging.

[55]  J. Hughes,et al.  A taxa–area relationship for bacteria , 2004, Nature.

[56]  Jaime A Cury,et al.  The influence of mutanase and dextranase on the production and structure of glucans synthesized by streptococcal glucosyltransferases. , 2004, Carbohydrate research.

[57]  J. Wimpenny,et al.  Heterogeneity in biofilms. , 2000, FEMS microbiology reviews.

[58]  R. C. Whiting,et al.  When is simple good enough: a comparison of the Gompertz, Baranyi, and three-phase linear models for fitting bacterial growth curves , 1997 .

[59]  David P. Dobkin,et al.  The quickhull algorithm for convex hulls , 1996, TOMS.

[60]  J Baranyi,et al.  A dynamic approach to predicting bacterial growth in food. , 1994, International journal of food microbiology.

[61]  W. Bowen,et al.  Glucans synthesized in situ in experimental salivary pellicle function as specific binding sites for Streptococcus mutans , 1992, Infection and immunity.

[62]  T. A. Roberts,et al.  Predicting microbial growth: growth responses of salmonellae in a laboratory medium as affected by pH, sodium chloride and storage temperature. , 1988, International journal of food microbiology.

[63]  J. Monod.  The Growth of Bacterial Cultures , 1949 .

[64]  K. Lewis.  Persister cells, dormancy and infectious disease , 2007, Nature Reviews Microbiology.