High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome

[1]  N. Ban,et al.  Trigger factor in complex with the ribosome forms a molecular cradle for nascent proteins , 2004, Nature.

[2]  E. Craig,et al.  Ribosome-tethered molecular chaperones: the first line of defense against protein misfolding? , 2003, Current opinion in microbiology.

[3]  J. Ballesta,et al.  Ribosomal acidic phosphoproteins P1 and P2 are not required for cell viability but regulate the pattern of protein expression in Saccharomyces cerevisiae , 1995, Molecular and cellular biology.

[4]  D. N. Perkins,et al.  Probability‐based protein identification by searching sequence databases using mass spectrometry data , 1999, Electrophoresis.

[5]  Bernd Bukau,et al.  The Hsp70 and Hsp60 Chaperone Machines , 1998, Cell.

[6]  M. Wiedmann,et al.  A protein complex required for signal-sequence-specific sorting and translocation , 1994, Nature.

[7]  B. Wittmann-Liebold Ribosomal Proteins: Their Structure and Evolution , 1986 .

[8]  The Arabidopsis Genome Initiative Analysis of the genome sequence of the flowering plant Arabidopsis thaliana , 2000, Nature.

[9]  C. Gorrini,et al.  Release of eIF6 (p27BBP) from the 60S subunit allows 80S ribosome assembly , 2003, Nature.

[10]  K. Resing,et al.  Mass Spectrometric Analysis of 40 S Ribosomal Proteins from Rat-1 Fibroblasts* , 1996, The Journal of Biological Chemistry.

[11]  E. Nordhoff,et al.  Alpha-cyano-4-hydroxycinnamic acid affinity sample preparation. A protocol for MALDI-MS peptide analysis in proteomics. , 2001, Analytical chemistry.

[12]  C. Watanabe,et al.  Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[13]  R. Krishna,et al.  Post-translational modification of proteins. , 1993, Advances in enzymology and related areas of molecular biology.

[14]  M. Capel,et al.  Characterization of Nicotiana tabacum chloroplast and cytoplasmic ribosomal proteins. , 1982, The Journal of biological chemistry.

[15]  H. Braun,et al.  Proteomic approach to identify novel mitochondrial proteins in Arabidopsis. , 2001, Plant physiology.

[16]  M. Hochstrasser,et al.  Structure and functional analyses of the 26S proteasome subunits from plants – Plant 26S proteasome , 1999, Molecular Biology Reports.

[17]  A. Subramanian,et al.  Proteomic identification of all plastid-specific ribosomal proteins in higher plant chloroplast 30S ribosomal subunit. , 2003, European journal of biochemistry.

[18]  T. Steitz,et al.  2SB5 The complete atomic structure of the large ribosomal subunit from Haloarcula marismortui , 2000 .

[19]  M. Salvucci,et al.  Rubisco: structure, regulatory interactions, and possibilities for a better enzyme. , 2002, Annual review of plant biology.

[20]  M. Marahiel,et al.  Peptidyl-prolyl cis-trans isomerases, a superfamily of ubiquitous folding catalysts , 1999, Cellular and Molecular Life Sciences CMLS.

[21]  T. Steitz,et al.  The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. , 2000, Science.

[22]  M. McLeod,et al.  Cpc2/RACK1 Is a Ribosome-associated Protein That Promotes Efficient Translation in Schizosaccharomyces pombe* , 2003, Journal of Biological Chemistry.

[23]  G. Edelman,et al.  The ribosome filter hypothesis , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[24]  Hans Lehrach,et al.  Large‐gel two‐dimensional electrophoresis‐matrix assisted laser desorption/ionization‐time of flight‐mass spectrometry: An analytical challenge for studying complex protein mixtures , 2001 .

[25]  R. Schmidt The Arabidopsis genome , 2000 .

[26]  I. Andersson,et al.  Structural framework for catalysis and regulation in ribulose-1,5-bisphosphate carboxylase/oxygenase. , 2003, Archives of biochemistry and biophysics.

[27]  J. Bailey-Serres,et al.  Regulated Heterogeneity in 12-kDa P-protein Phosphorylation and Composition of Ribosomes in Maize (Zea mays L.)* , 2001, The Journal of Biological Chemistry.

[28]  H. Lehrach,et al.  Extraction of proteins from plant tissues for two‐dimensional electrophoresis analysis , 2003, Electrophoresis.

[29]  M. Delseny,et al.  Extensive Duplication and Reshuffling in the Arabidopsis Genome , 2000, Plant Cell.

[30]  A. Gatenby,et al.  Rubisco Synthesis, Assembly, Mechanism, and Regulation. , 1995, The Plant cell.

[31]  J. Reilly,et al.  Analysis of methylation and acetylation in E. coli ribosomal proteins. , 2002, Methods in molecular biology.

[32]  J. Thelen,et al.  The Dihydrolipoamide S-Acetyltransferase Subunit of the Mitochondrial Pyruvate Dehydrogenase Complex from Maize Contains a Single Lipoyl Domain* , 1999, The Journal of Biological Chemistry.

[33]  A. Subramanian,et al.  The plastid ribosomal proteins. Identification of all the proteins in the 50 S subunit of an organelle ribosome (chloroplast). , 2000, The Journal of biological chemistry.

[34]  N. Anderson,et al.  Analysis of changes in acute‐phase plasma proteins in an acute inflammatory response and in rheumatoid arthritis using two‐dimensional gel electrophoresis , 1998, Electrophoresis.

[35]  J. Yates,et al.  Proteomic Characterization of the Chlamydomonas reinhardtii Chloroplast Ribosome , 2003, Journal of Biological Chemistry.

[36]  F. Schluenzen,et al.  Structure of Functionally Activated Small Ribosomal Subunit at 3.3 Å Resolution , 2000, Cell.

[37]  R. Wettenhall,et al.  Phosphorylation of hepatic ribosomal protein S6 on 80 and 40 S ribosomes. Primary structure of S6 in the region of the major phosphorylation sites for cAMP-dependent protein kinases. , 1984, The Journal of biological chemistry.

[38]  Frank Schluenzen,et al.  High Resolution Structure of the Large Ribosomal Subunit from a Mesophilic Eubacterium , 2001, Cell.

[39]  J. Yates,et al.  Direct analysis of protein complexes using mass spectrometry , 1999, Nature Biotechnology.

[40]  Joachim Klose,et al.  Two‐dimensional electrophoresis of proteins: An updated protocol and implications for a functional analysis of the genome , 1995, Electrophoresis.

[41]  D. Bouchez,et al.  The 20S proteasome gene family in Arabidopsis thaliana , 1997, FEBS letters.

[42]  F. Nagy,et al.  A Heat-Sensitive Arabidopsis thalianaKinase Substitutes for Human p70s6k Function In Vivo , 1998, Molecular and Cellular Biology.

[43]  C. Vonrhein,et al.  Structure of the 30S ribosomal subunit , 2000, Nature.

[44]  A Yonath,et al.  Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution. , 2000, Cell.

[45]  A. Podtelejnikov,et al.  Delayed extraction improves specificity in database searches by matrix-assisted laser desorption/ionization peptide maps. , 1996, Rapid communications in mass spectrometry : RCM.

[46]  E. Dabbs,et al.  Translation Elongation by a Hybrid Ribosome in Which Proteins at the GTPase Center of the Escherichia coli Ribosome Are Replaced with Rat Counterparts* , 2002, The Journal of Biological Chemistry.

[47]  M. Estelle Proteases and cellular regulation in plants. , 2001, Current opinion in plant biology.

[48]  P. Bork,et al.  Alternative splicing and genome complexity , 2002, Nature Genetics.

[49]  J. Reilly,et al.  Observation of Escherichia coli ribosomal proteins and their posttranslational modifications by mass spectrometry. , 1999, Analytical biochemistry.

[50]  J. Frank,et al.  Regulation of eukaryotic translation by the RACK1 protein: a platform for signalling molecules on the ribosome , 2004, EMBO reports.

[51]  A. Shevchenko,et al.  Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. , 1996, Analytical chemistry.

[52]  E. Nordhoff,et al.  Large-gel two-dimensional electrophoresis-matrix assisted laser desorption/ionization-time of flight-mass spectrometry: an analytical challenge for studying complex protein mixtures. , 2001, Electrophoresis.

[53]  A. Liljas,et al.  The structure and dynamics of ribosomal protein L12. , 1987, Biochimie.

[54]  J. G. Patton,et al.  Alternative splicing in the control of gene expression. , 1989, Annual review of genetics.

[55]  J. Frank,et al.  Identification of the versatile scaffold protein RACK1 on the eukaryotic ribosome by cryo-EM , 2004, Nature Structural &Molecular Biology.

[56]  A. Otto,et al.  Characterization of the human small-ribosomal-subunit proteins by N-terminal and internal sequencing, and mass spectrometry. , 1996, European journal of biochemistry.

[57]  G. Kramer,et al.  Structure, Function, and Genetics of Ribosomes , 1986, Springer Series in Molecular Biology.

[58]  Joachim Klose,et al.  Proteome analysis of Arabidopsis thaliana by two‐dimensional gel electrophoresis and matrix‐assisted laser desorption/ionisation‐time of flight mass spectrometry , 2005, Proteomics.

[59]  S. Kostka,et al.  Characterization and Analysis of Posttranslational Modifications of the Human Large Cytoplasmic Ribosomal Subunit Proteins by Mass Spectrometry and Edman Sequencing , 2003, Journal of protein chemistry.

[60]  I. Wool,et al.  Structure and evolution of mammalian ribosomal proteins. , 1995, Biochemistry and cell biology = Biochimie et biologie cellulaire.

[61]  Gordon A Anderson,et al.  Direct mass spectrometric analysis of intact proteins of the yeast large ribosomal subunit using capillary LC/FTICR , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[62]  Abdelali Barakat,et al.  The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. , 2001, Plant physiology.

[63]  Howard M. Goodman,et al.  High resolution two-dimensional electrophoresis of basic as well as acidic proteins , 1977, Cell.

[64]  H. Lehrach,et al.  A calibration method that simplifies and improves accurate determination of peptide molecular masses by MALDI-TOF MS. , 2002, Analytical chemistry.

[65]  Daniel N. Wilson,et al.  The ribosome through the looking glass. , 2003, Angewandte Chemie.

[66]  Richard D Vierstra,et al.  The ubiquitin/26S proteasome pathway, the complex last chapter in the life of many plant proteins. , 2003, Trends in plant science.

[67]  J. S. Gantt,et al.  Coordinate expression of ribosomal protein mRNAs following auxin treatment of soybean hypocotyls. , 1985, The Journal of biological chemistry.

[68]  J. Ballesta,et al.  The large ribosomal subunit stalk as a regulatory element of the eukaryotic translational machinery. , 1996, Progress in nucleic acid research and molecular biology.

[69]  J. Ballesta,et al.  Mass Spectrometry of Ribosomes from Saccharomyces cerevisiae , 2004, Journal of Biological Chemistry.

[70]  Marion Kee,et al.  Analysis , 2004, Machine Translation.

[71]  R. Vierstra,et al.  Protein degradation in signaling. , 2000, Current opinion in plant biology.

[72]  A. Subramanian,et al.  The Plastid Ribosomal Proteins , 2000, The Journal of Biological Chemistry.

[73]  Daniel N. Wilson,et al.  Localization of the trigger factor binding site on the ribosomal 50S subunit. , 2003, Journal of molecular biology.