Visualization of cortical, subcortical and deep brain neural circuit dynamics during naturalistic mammalian behavior with head-mounted microscopes and chronically implanted lenses
暂无分享,去创建一个
James M. Otis | Shanna L Resendez | Josh H Jennings | Randall L Ung | Vijay Mohan K Namboodiri | Zhe Charles Zhou | James M Otis | Hiroshi Nomura | Jenna A McHenry | Oksana Kosyk | Garret D Stuber | Joshua H. Jennings | G. Stuber | J. McHenry | O. Kosyk | V. Namboodiri | Z. Zhou | Randall L. Ung | H. Nomura | Shanna Resendez
[1] K. Svoboda,et al. Principles of Two-Photon Excitation Microscopy and Its Applications to Neuroscience , 2006, Neuron.
[2] A. Gamal,et al. Miniaturized integration of a fluorescence microscope , 2011, Nature Methods.
[3] Joshua H. Jennings,et al. Tools for Resolving Functional Activity and Connectivity within Intact Neural Circuits , 2014, Current Biology.
[4] Yang Dan,et al. Cell-Type-Specific Activity in Prefrontal Cortex during Goal-Directed Behavior , 2015, Neuron.
[5] W. Gan,et al. Branch-specific dendritic Ca2+ spikes cause persistent synaptic plasticity , 2015, Nature.
[6] F. Strumwasser,et al. Membrane-potential-sensitive dyes for optical monitoring of activity in Aplysia neurons. , 1978, Journal of neurobiology.
[7] R. Yuste,et al. Detecting action potentials in neuronal populations with calcium imaging. , 1999, Methods.
[8] K. Svoboda,et al. Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window , 2009, Nature Protocols.
[9] Adam R Ferguson,et al. Big data from small data: data-sharing in the 'long tail' of neuroscience , 2014, Nature Neuroscience.
[10] Timothy J. Gardner,et al. Mesoscopic Patterns of Neural Activity Support Songbird Cortical Sequences , 2015, PLoS biology.
[11] G. Buzsáki,et al. Tools for probing local circuits: high-density silicon probes combined with optogenetics , 2015, Neuron.
[12] Nephi Stella,et al. Chronic microsensors for longitudinal, subsecond dopamine detection in behaving animals , 2009, Nature Methods.
[13] Shanna L Resendez,et al. In vivo Calcium Imaging to Illuminate Neurocircuit Activity Dynamics Underlying Naturalistic Behavior , 2015, Neuropsychopharmacology.
[14] Walther Akemann,et al. Imaging brain electric signals with genetically targeted voltage-sensitive fluorescent proteins , 2010, Nature Methods.
[15] Philippe Mourrain,et al. Imaging zebrafish neural circuitry from whole brain to synapse , 2013, Front. Neural Circuits.
[16] Raag D. Airan,et al. Natural Neural Projection Dynamics Underlying Social Behavior , 2014, Cell.
[17] M. Andermann,et al. Imaging Neuronal Populations in Behaving Rodents: Paradigms for Studying Neural Circuits Underlying Behavior in the Mammalian Cortex , 2013, The Journal of Neuroscience.
[18] M. Levene,et al. In vivo imaging of deep cortical layers using a microprism. , 2009, Journal of visualized experiments : JoVE.
[19] Michael Brecht,et al. Electrophysiological recordings from behaving animals—going beyond spikes , 2009, Current Opinion in Neurobiology.
[20] Steven S. Vogel,et al. Deep brain optical measurements of cell type–specific neural activity in behaving mice , 2014, Nature Protocols.
[21] Yei Hwan Jung,et al. Injectable, Cellular-Scale Optoelectronics with Applications for Wireless Optogenetics , 2013, Science.
[22] Garret D Stuber,et al. Construction of implantable optical fibers for long-term optogenetic manipulation of neural circuits , 2011, Nature Protocols.
[23] David Pfau,et al. Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data , 2016, Neuron.
[24] R. Clay Reid,et al. Chronic Cellular Imaging of Entire Cortical Columns in Awake Mice Using Microprisms , 2013, Neuron.
[25] B. Sakmann,et al. Calcium dynamics associated with a single action potential in a CNS presynaptic terminal. , 1997, Biophysical journal.
[26] D. Hubel. Single unit activity in lateral geniculate body and optic tract of unrestrained cats , 1960, The Journal of physiology.
[27] Karl Deisseroth,et al. Visualizing Hypothalamic Network Dynamics for Appetitive and Consummatory Behaviors , 2015, Cell.
[28] Lief E. Fenno,et al. The development and application of optogenetics. , 2011, Annual review of neuroscience.
[29] Sreekanth H. Chalasani,et al. Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators , 2009, Nature Methods.
[30] Toru Aonishi,et al. Detecting cells using non-negative matrix factorization on calcium imaging data , 2014, Neural Networks.
[31] Amy E Palmer,et al. Measuring calcium signaling using genetically targetable fluorescent indicators , 2006, Nature Protocols.
[32] Yaniv Ziv,et al. Time-lapse imaging of disease progression in deep brain areas using fluorescence microendoscopy , 2011, Nature Medicine.
[33] Mark J. Schnitzer,et al. Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data , 2009, Neuron.
[34] Benjamin F. Grewe,et al. Cellular Level Brain Imaging in Behaving Mammals: An Engineering Approach , 2015, Neuron.
[35] Allan R. Jones,et al. A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing , 2012, Nature Neuroscience.
[36] Alice M Stamatakis,et al. Distinct extended amygdala circuits for divergent motivational states , 2013, Nature.
[37] Sooyoung Chung,et al. Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex , 2005, Nature.
[38] Z. Werb,et al. Monitoring of vital signs for long-term survival of mice under anesthesia. , 2011, Cold Spring Harbor protocols.
[39] R. Wightman,et al. Detecting subsecond dopamine release with fast-scan cyclic voltammetry in vivo. , 2003, Clinical chemistry.
[40] Raymond P. Molloy,et al. In vivo multiphoton microscopy of deep brain tissue. , 2004, Journal of neurophysiology.
[41] A. Borst,et al. A genetically encoded calcium indicator for chronic in vivo two-photon imaging , 2008, Nature Methods.
[42] Lacey J. Kitch,et al. Long-term dynamics of CA1 hippocampal place codes , 2013, Nature Neuroscience.
[43] Lacey J. Kitch,et al. Distinct speed dependence of entorhinal island and ocean cells, including respective grid cells , 2015, Proceedings of the National Academy of Sciences.
[44] Manuel Guizar-Sicairos,et al. Efficient subpixel image registration algorithms. , 2008, Optics letters.
[45] John P Cunningham. Analyzing neural data at huge scale , 2014, Nature Methods.
[46] Hongkui Zeng,et al. A Cre-Dependent GCaMP3 Reporter Mouse for Neuronal Imaging In Vivo , 2012, The Journal of Neuroscience.
[47] C. Vorhees,et al. Morris water maze: procedures for assessing spatial and related forms of learning and memory , 2006, Nature Protocols.
[48] M. Dichter,et al. Specific AAV serotypes stably transduce primary hippocampal and cortical cultures with high efficiency and low toxicity , 2008, Brain Research.
[49] François Guillemot,et al. Visualization and Genetic Manipulation of Dendrites and Spines in the Mouse Cerebral Cortex and Hippocampus using In utero Electroporation , 2012, Journal of visualized experiments : JoVE.
[50] J. Wojtowicz,et al. BrdU assay for neurogenesis in rodents , 2006, Nature Protocols.
[51] Lacey J. Kitch,et al. Entorhinal Cortical Ocean Cells Encode Specific Contexts and Drive Context-Specific Fear Memory , 2015, Neuron.
[52] R. Tsien,et al. Fluorescent indicators for Ca2+based on green fluorescent proteins and calmodulin , 1997, Nature.
[53] J. Betley,et al. Neurons for hunger and thirst transmit a negative-valence teaching signal , 2015, Nature.
[54] Benjamin R. Arenkiel,et al. Imaging Neural Activity Using Thy1-GCaMP Transgenic Mice , 2012, Neuron.
[55] Junichi Nakai,et al. Comparison of genetically encoded calcium indicators for monitoring action potentials in mammalian brain by two-photon excitation fluorescence microscopy , 2015, Neurophotonics.
[56] Garret D Stuber,et al. Dissecting the neural circuitry of addiction and psychiatric disease with optogenetics , 2010, Neuropsychopharmacology.
[57] Takashi Kawashima,et al. Mapping brain activity at scale with cluster computing , 2014, Nature Methods.
[58] G. Roth,et al. Evolution of the brain and intelligence , 2005, Trends in Cognitive Sciences.
[59] Garret D Stuber,et al. Integrating Optogenetic and Pharmacological Approaches to Study Neural Circuit Function: Current Applications and Future Directions , 2013, Pharmacological Reviews.
[60] Mark J. Schnitzer,et al. Zolpidem Reduces Hippocampal Neuronal Activity in Freely Behaving Mice: A Large Scale Calcium Imaging Study with Miniaturized Fluorescence Microscope , 2014, PloS one.
[61] A. Mehta,et al. In vivo mammalian brain imaging using one- and two-photon fluorescence microendoscopy. , 2004, Journal of neurophysiology.
[62] Na Ji,et al. Characterization and improvement of three-dimensional imaging performance of GRIN-lens-based two-photon fluorescence endomicroscopes with adaptive optics. , 2013, Optics express.
[63] Yuji Ikegaya,et al. Genetically Encoded Green Fluorescent Ca2+ Indicators with Improved Detectability for Neuronal Ca2+ Signals , 2012, PloS one.
[64] Ying Song,et al. Direct labeling and visualization of blood vessels with lipophilic carbocyanine dye DiI , 2008, Nature Protocols.
[65] Yaniv Ziv,et al. Miniature microscopes for large-scale imaging of neuronal activity in freely behaving rodents , 2015, Current Opinion in Neurobiology.
[66] M. Levene,et al. Microprisms for in vivo multilayer cortical imaging. , 2009, Journal of neurophysiology.
[67] J Anthony Movshon,et al. Putting big data to good use in neuroscience , 2014, Nature Neuroscience.
[68] M. Dichter,et al. The use of specific AAV serotypes to stably transduce primary CNS neuron cultures. , 2012, Methods in molecular biology.
[69] John A Rogers,et al. Fabrication and application of flexible, multimodal light-emitting devices for wireless optogenetics , 2013, Nature Protocols.
[70] Jasper Akerboom,et al. Optimization of a GCaMP Calcium Indicator for Neural Activity Imaging , 2012, The Journal of Neuroscience.
[71] Nathan C. Klapoetke,et al. Transgenic Mice for Intersectional Targeting of Neural Sensors and Effectors with High Specificity and Performance , 2015, Neuron.
[72] Michael Unser,et al. A pyramid approach to subpixel registration based on intensity , 1998, IEEE Trans. Image Process..
[73] Petr Tvrdik,et al. Imaging activity in astrocytes and neurons with genetically encoded calcium indicators following in utero electroporation , 2015, Front. Mol. Neurosci..
[74] Daniel Dombeck,et al. Two-photon imaging of neural activity in awake mobile mice. , 2014, Cold Spring Harbor protocols.
[75] J. Gerard G. Borst,et al. Intracellular responses to frequency modulated tones in the dorsal cortex of the mouse inferior colliculus , 2013, Front. Neural Circuits.
[76] Marco Sassoè-Pognetto,et al. Immunofluorescence in brain sections: simultaneous detection of presynaptic and postsynaptic proteins in identified neurons , 2006, Nature Protocols.
[77] Christine Grienberger,et al. Imaging Calcium in Neurons , 2012, Neuron.
[78] J Athos,et al. High Precision Stereotaxic Surgery in Mice , 2001, Current protocols in neuroscience.
[79] Stefan R. Pulver,et al. Ultra-sensitive fluorescent proteins for imaging neuronal activity , 2013, Nature.
[80] Mark J Schnitzer,et al. In vivo optical microendoscopy for imaging cells lying deep within live tissue. , 2012, Cold Spring Harbor protocols.
[81] D. Kleinfeld,et al. Anatomical and functional imaging of neurons using 2-photon laser scanning microscopy , 1994, Journal of Neuroscience Methods.
[82] P. Reier,et al. Recombinant AAV viral vectors pseudotyped with viral capsids from serotypes 1, 2, and 5 display differential efficiency and cell tropism after delivery to different regions of the central nervous system. , 2004, Molecular therapy : the journal of the American Society of Gene Therapy.
[83] Andreas Hierlemann,et al. Sub-millisecond closed-loop feedback stimulation between arbitrary sets of individual neurons , 2012, Front. Neural Circuits.
[84] A. Mehta,et al. Multiphoton endoscopy: optical design and application to in vivo imaging of mammalian hippocampal neurons , 2003, Conference on Lasers and Electro-Optics, 2003. CLEO '03..
[85] D. Tank,et al. Imaging Large-Scale Neural Activity with Cellular Resolution in Awake, Mobile Mice , 2007, Neuron.
[86] R. Yuste,et al. The Brain Activity Map Project and the Challenge of Functional Connectomics , 2012, Neuron.
[87] Ilana B. Witten,et al. Recombinase-Driver Rat Lines: Tools, Techniques, and Optogenetic Application to Dopamine-Mediated Reinforcement , 2011, Neuron.
[88] Samuel S-H Wang,et al. Identification and clustering of event patterns from in vivo multiphoton optical recordings of neuronal ensembles. , 2008, Journal of neurophysiology.