Elimination of “kitome” and “splashome” contamination results in lack of detection of a unique placental microbiome

[1]  Prevention of Group B Streptococcal Early-Onset Disease in Newborns: ACOG Committee Opinion, Number 797. , 2020, Obstetrics and gynecology.

[2]  I. Haviv,et al.  Deep microbial analysis of multiple placentas shows no evidence for a placental microbiome , 2020, BJOG : an international journal of obstetrics and gynaecology.

[3]  K. Aagaard,et al.  Visualization of Microbes by 16S in situ Hybridization in Term and Preterm Placentae without Intraamniotic Infection. , 2019, American journal of obstetrics and gynecology.

[4]  D. Charnock-Jones,et al.  Human placenta has no microbiome but can harbour potential pathogens , 2019, Nature.

[5]  Acog Committee Opinion.  Prevention of Group B Streptococcal Early-Onset Disease in Newborns , 2019, Pediatrics.

[6]  Amnon Amir,et al.  Quantifying and Understanding Well-to-Well Contamination in Microbiome Research , 2019, mSystems.

[7]  Jennifer M. Fettweis,et al.  Does the human placenta delivered at term have a microbiota? Results of cultivation, quantitative real‐time PCR, 16S rRNA gene sequencing, and metagenomics , 2019, American journal of obstetrics and gynecology.

[8]  Rob Knight,et al.  Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations. , 2019, Trends in microbiology.

[9]  Erik L. Clarke,et al.  Lack of detection of a human placenta microbiome in samples from preterm and term deliveries , 2018, Microbiome.

[10]  L. Hoffman,et al.  How low can we go? The implications of low bacterial load in respiratory microbiota studies , 2018, Pneumonia.

[11]  J. Funk,et al.  Development of the tonsillar microbiome in pigs from newborn through weaning , 2018, BMC Microbiology.

[12]  Ryan Hendrickson,et al.  KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples , 2018, mSystems.

[13]  Michael W. Hall,et al.  16S rRNA Gene Analysis with QIIME2. , 2018, Methods in molecular biology.

[14]  Atsunori Tanaka,et al.  Elimination of contaminating amplified short tandem repeat products by autoclaving and ultraviolet irradiation , 2018, Medicine, science, and the law.

[15]  ACOG Practice Bulletin No. 190: Gestational Diabetes Mellitus. , 2018, Obstetrics and gynecology.

[16]  Publisher's Note , 2018, Anaesthesia.

[17]  Lindsay A. Parnell,et al.  Microbial communities in placentas from term normal pregnancy exhibit spatially variable profiles , 2017, Scientific Reports.

[18]  Xinhua Xiao,et al.  The Placental Microbiota Is Altered among Subjects with Gestational Diabetes Mellitus: A Pilot Study , 2017, Front. Physiol..

[19]  Xin-Hua Xiao,et al.  Correlation of placental microbiota with fetal macrosomia and clinical characteristics in mothers and newborns , 2017, Oncotarget.

[20]  M. Nitert,et al.  Contributions of the maternal oral and gut microbiome to placental microbial colonization in overweight and obese pregnant women , 2017, Scientific Reports.

[21]  Kyle Bittinger,et al.  Optimizing methods and dodging pitfalls in microbiome research , 2017, Microbiome.

[22]  M. Nieuwdorp,et al.  Role of the Gut Microbiome in the Pathogenesis of Obesity and Obesity-Related Metabolic Dysfunction. , 2017, Gastroenterology.

[23]  S. Stock,et al.  Preterm birth: Inflammation, fetal injury and treatment strategies. , 2017, Journal of reproductive immunology.

[24]  L. Simpson.  Practice Bulletin No. 175: Ultrasound in Pregnancy , 2016, Obstetrics and gynecology.

[25]  K. Aagaard,et al.  Generation and validation of a universal perinatal database and biospecimen repository: PeriBank , 2016, Journal of Perinatology.

[26]  J. Fernández-Real,et al.  Gestational diabetes is associated with changes in placental microbiota and microbiome , 2016, Pediatric Research.

[27]  F. Bushman,et al.  Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota , 2016, Microbiome.

[28]  Scot E. Dowd,et al.  Inherent bacterial DNA contamination of extraction and sequencing reagents may affect interpretation of microbiota in low bacterial biomass samples , 2016, Gut Pathogens.

[29]  D. Kell,et al.  The dormant blood microbiome in chronic, inflammatory diseases , 2015, FEMS microbiology reviews.

[30]  K. Aagaard,et al.  The preterm placental microbiome varies in association with excess maternal gestational weight gain. , 2015, American journal of obstetrics and gynecology.

[31]  V. Dissanayake,et al.  Microbiome of the placenta in pre‐eclampsia supports the role of bacteria in the multifactorial cause of pre‐eclampsia , 2015, The journal of obstetrics and gynaecology research.

[32]  Paul Turner,et al.  Reagent and laboratory contamination can critically impact sequence-based microbiome analyses , 2014, BMC Biology.

[33]  Kang Ning,et al.  Assessment of quality control approaches for metagenomic data analysis , 2014, Scientific Reports.

[34]  H. Kliman,et al.  Comment on “The placenta harbors a unique microbiome” , 2014, Science Translational Medicine.

[35]  J. Petrosino,et al.  The Placenta Harbors a Unique Microbiome , 2014, Science Translational Medicine.

[36]  Douglas E. Brash,et al.  Common Contaminants in Next-Generation Sequencing That Hinder Discovery of Low-Abundance Microbes , 2014, PloS one.

[37]  F. Tinahones,et al.  Impact of the gut microbiota on the development of obesity and type 2 diabetes mellitus , 2014, Front. Microbiol..

[38]  I. Mysorekar,et al.  Intracellular bacteria in placental basal plate localize to extravillous trophoblasts. , 2014, Placenta.

[39]  W. Crielaard,et al.  Sterile paper points as a bacterial DNA-contamination source in microbiome profiles of clinical samples. , 2013, Journal of dentistry.

[40]  Sarah L. Westcott,et al.  Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform , 2013, Applied and Environmental Microbiology.

[41]  D. Nelson,et al.  Identification of intracellular bacteria in the basal plate of the human placenta in term and preterm gestations. , 2013, American journal of obstetrics and gynecology.

[42]  Pelin Yilmaz,et al.  The SILVA ribosomal RNA gene database project: improved data processing and web-based tools , 2012, Nucleic Acids Res..

[43]  Katherine H. Huang,et al.  Structure, Function and Diversity of the Healthy Human Microbiome , 2012, Nature.

[44]  G. Getz,et al.  PathSeq: software to identify or discover microbes by deep sequencing of human tissue , 2011, Nature Biotechnology.

[45]  Thierry Grange,et al.  An Efficient Multistrategy DNA Decontamination Procedure of PCR Reagents for Hypersensitive PCR Applications , 2010, PloS one.

[46]  Michael Donley,et al.  UV irradiation and autoclave treatment for elimination of contaminating DNA from laboratory consumables. , 2010, Forensic science international. Genetics.

[47]  Martin Hartmann,et al.  Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities , 2009, Applied and Environmental Microbiology.

[48]  S. Hauguel-de Mouzon,et al.  Differential regulation of genes for fetoplacental lipid pathways in pregnancy with gestational and type 1 diabetes mellitus. , 2009, American journal of obstetrics and gynecology.

[49]  B. Roe,et al.  A core gut microbiome in obese and lean twins , 2008, Nature.

[50]  L. Fulton,et al.  Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. , 2008, Cell host & microbe.

[51]  Roberto Romero,et al.  Epidemiology and causes of preterm birth , 2008, The Lancet.

[52]  A. Leviton,et al.  Detection of bacteria in placental tissues obtained from extremely low gestational age neonates. , 2008, American journal of obstetrics and gynecology.

[53]  E. Mardis,et al.  An obesity-associated gut microbiome with increased capacity for energy harvest , 2006, Nature.

[54]  C. Vandenbroucke-Grauls,et al.  Removal of contaminating DNA from commercial nucleic acid extraction kit reagents. , 2005, Journal of microbiological methods.

[55]  N. Zou,et al.  Presence of Bacterial Phage-Like DNA Sequences in Commercial Taq DNA Polymerase Reagents , 2004, Journal of Clinical Microbiology.

[56]  J. Jonasson,et al.  Identification of mixed bacterial DNA contamination in broad-range PCR amplification of 16S rDNA V1 and V3 variable regions by pyrosequencing of cloned amplicons. , 2003, FEMS microbiology letters.

[57]  K. Ogden,et al.  Survival and nutritional requirements of three bacteria isolated from ultrapure water , 2002, Journal of Industrial Microbiology and Biotechnology.

[58]  R. Romero,et al.  Intrauterine infection and prematurity. , 2002, Mental retardation and developmental disabilities research reviews.

[59]  R. Romero,et al.  The role of infection in preterm labour and delivery. , 2001, Paediatric and perinatal epidemiology.

[60]  O Hammer-Muntz,et al.  PAST: paleontological statistics software package for education and data analysis version 2.09 , 2001 .

[61]  Ø. Hammer,et al.  PAST: PALEONTOLOGICAL STATISTICAL SOFTWARE PACKAGE FOR EDUCATION AND DATA ANALYSIS , 2001 .

[62]  R. Borrow,et al.  Contamination and Sensitivity Issues with a Real-Time Universal 16S rRNA PCR , 2000, Journal of Clinical Microbiology.

[63]  J. Abedi.  Issues and recommendations concerning COVID-19 vaccine rollout The Independent SAGE Report 25 , 2000 .

[64]  J. Palmer,et al.  Investigating Deep Phylogenetic Relationships among Cyanobacteria and Plastids by Small Subunit rRNA Sequence Analysis 1 , 1999, The Journal of eukaryotic microbiology.

[65]  G. McFeters,et al.  Distribution of bacteria within operating laboratory water purification systems , 1993, Applied and environmental microbiology.

[66]  I. Pataki,et al.  Isolation of aerobic bacteria from the placenta. , 1982, Acta paediatrica Academiae Scientiarum Hungaricae.