Averaging and large deviation principles for fully-coupled piecewise deterministic Markov processes and applications to molecular motors

We consider Piecewise Deterministic Markov Processes (PDMPs) with a finite set of discrete states. In the regime of fast jumps between discrete states, we prove a law of large numbers and a large deviation principle. In the regime of fast and slow jumps, we analyze a coarse-grained process associated to the original one and prove its convergence to a new PDMP with eective force fields and jump rates. In all the above cases, the continuous variables evolve slowly according to ODEs. Finally, we discuss some applications related to the mechanochemical cycle of macromolecules, including strained-dependent power-stroke molecular motors. Our analysis covers the case of fully-coupled slow and fast motions.

[1]  Mark H. A. Davis Piecewise‐Deterministic Markov Processes: A General Class of Non‐Diffusion Stochastic Models , 1984 .

[2]  C. Landim,et al.  Scaling Limits of Interacting Particle Systems , 1998 .

[3]  Yuri Kifer,et al.  Large deviations and adiabatic transitions for dynamical systems and Markov processes in fully coupled averaging , 2007, 0710.2405.

[4]  Andrew L. Rukhin,et al.  Continuous-Time Markov Chains and Applications: A Singular Perturbation Approach , 2001, Technometrics.

[5]  V. Arnold Mathematical Methods of Classical Mechanics , 1974 .

[6]  Alex Mogilner,et al.  Mechanics of Motor Proteins and the Cytoskeleton , 2002 .

[7]  丸山 徹 Convex Analysisの二,三の進展について , 1977 .

[8]  T. Kurtz,et al.  Large Deviations for Stochastic Processes , 2006 .

[9]  T Duke,et al.  Cooperativity of myosin molecules through strain-dependent chemistry. , 2000, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[10]  A. Veretennikov,et al.  On Large Deviations in the Averaging Principle for SDEs with a “Full Dependence” , 1999 .

[11]  S. Varadhan,et al.  Large deviations , 2019, Graduate Studies in Mathematics.

[12]  P. Reimann Brownian motors: noisy transport far from equilibrium , 2000, cond-mat/0010237.

[13]  J. Prost,et al.  Spontaneous Oscillations of Collective Molecular Motors , 1996, cond-mat/9611204.

[14]  Tim N. Palmer,et al.  Signature of recent climate change in frequencies of natural atmospheric circulation regimes , 1999, Nature.

[15]  Amir Dembo,et al.  Large Deviations Techniques and Applications , 1998 .

[16]  Thomas Duke,et al.  Instabilities in the transient response of muscle. , 2003, Biophysical journal.

[17]  Mark H. Davis Markov Models and Optimization , 1995 .

[18]  M. Freidlin,et al.  Random Perturbations of Dynamical Systems , 1984 .

[19]  Qing Zhang,et al.  Continuous-Time Markov Chains and Applications , 1998 .

[20]  A. Faggionato,et al.  Non-equilibrium Thermodynamics of Piecewise Deterministic Markov Processes , 2009 .