Linker histones are fine-scale chromatin architects modulating developmental decisions in Arabidopsis
暂无分享,去创建一个
C. Baroux | K. Rutowicz | Maciej Lirski | Benoit Mermaz | Jasmin Schubert | G. Teano | Imen Mestiri | Magdalena A. Kroteń | Tohnyui Ndinyanka Fabrice | Simon Fritz | S. Grob | C. Ringli | L. Cherkezyan | F. Barneche | A. Jerzmanowski
[1] C. Baroux,et al. Linker histones are fine-scale chromatin architects modulating developmental decisions in Arabidopsis , 2019, Genome Biology.
[2] Jingyi Zhang,et al. Natural depletion of histone H1 in sex cells causes DNA demethylation, heterochromatin decondensation and transposon activation , 2019, eLife.
[3] C. Baroux,et al. Linker histones regulate fine-scale chromatin organization and modulate developmental decisions in Arabidopsis , 2018 .
[4] Shengbo He,et al. Natural depletion of H1 in sex cells causes DNA demethylation, heterochromatin decondensation and transposon activation , 2018, bioRxiv.
[5] Ricardo Almeida,et al. Chromatin conformation regulates the coordination between DNA replication and transcription , 2018, Nature Communications.
[6] Y. Yamashita,et al. A conserved function for pericentromeric satellite DNA , 2018, bioRxiv.
[7] Yawen Bai,et al. Emerging roles of linker histones in regulating chromatin structure and function , 2017, Nature Reviews Molecular Cell Biology.
[8] Célia Baroux,et al. Automated 3D Gene Position Analysis Using a Customized Imaris Plugin: XTFISHInsideNucleus. , 2018, Methods in molecular biology.
[9] C. Baroux,et al. Transmission Electron Microscopy Imaging to Analyze Chromatin Density Distribution at the Nanoscale Level. , 2018, Methods in molecular biology.
[10] D. Zilberman,et al. DDM1 and Lsh remodelers allow methylation of DNA wrapped in nucleosomes , 2017, eLife.
[11] L. Hennig,et al. Arabidopsis Chromatin Assembly Factor 1 is required for occupancy and position of a subset of nucleosomes , 2017, The Plant journal : for cell and molecular biology.
[12] L. Petzold,et al. The Role of Chromatin Density in Cell Population Heterogeneity during Stem Cell Differentiation , 2017, Scientific Reports.
[13] K. Paszkiewicz,et al. Genome-wide chromatin mapping with size resolution reveals a dynamic sub-nucleosomal landscape in Arabidopsis , 2017, PLoS genetics.
[14] C. Gutiérrez,et al. Emerging roles of chromatin in the maintenance of genome organization and function in plants , 2017, Genome Biology.
[15] S. Jacobsen,et al. The histone H3 variant H3.3 regulates gene body DNA methylation in Arabidopsis thaliana , 2017, Genome Biology.
[16] M. Schmid,et al. Temporal dynamics of gene expression and histone marks at the Arabidopsis shoot meristem during flowering , 2017, Nature Communications.
[17] R. Lavery,et al. Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1. , 2017, Molecular cell.
[18] K. Ginalski,et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain1[OPEN] , 2017, Plant Physiology.
[19] V. Backman,et al. The Global Relationship between Chromatin Physical Topology, Fractal Structure, and Gene Expression , 2017, Scientific Reports.
[20] R. Martienssen,et al. Live-cell analysis of DNA methylation during sexual reproduction in Arabidopsis reveals context and sex-specific dynamics controlled by noncanonical RdDM , 2017, Genes & development.
[21] R. Lavery,et al. Supplemental Information Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H 1 , 2017 .
[22] D. Zilberman,et al. Arabidopsis male sexual lineage exhibits more robust maintenance of CG methylation than somatic tissues , 2016, Proceedings of the National Academy of Sciences.
[23] Kuniaki Saito,et al. Piwi Modulates Chromatin Accessibility by Regulating Multiple Factors Including Histone H1 to Repress Transposons. , 2016, Molecular cell.
[24] W. Schmidt,et al. The regulation and plasticity of root hair patterning and morphogenesis , 2016, Development.
[25] Fidel Ramírez,et al. deepTools2: a next generation web server for deep-sequencing data analysis , 2016, Nucleic Acids Res..
[26] Robert J. Schmitz,et al. Histone H1 Limits DNA Methylation in Neurospora crassa , 2016, G3: Genes, Genomes, Genetics.
[27] K. Ginalski,et al. Histone H1 Variants in Arabidopsis Are Subject to Numerous Post-Translational Modifications, Both Conserved and Previously Unknown in Histones, Suggesting Complex Functions of H1 in Plants , 2016, PloS one.
[28] Chongsheng He,et al. Arabidopsis Flower and Embryo Developmental Genes are Repressed in Seedlings by Different Combinations of Polycomb Group Proteins in Association with Distinct Sets of Cis-regulatory Elements , 2016, PLoS genetics.
[29] F. Azorín,et al. Germline-specific H1 variants: the “sexy” linker histones , 2016, Chromosoma.
[30] J. Stamatoyannopoulos,et al. Local compartment changes and regulatory landscape alterations in histone H1-depleted cells , 2015, Genome Biology.
[31] R. Schneider,et al. The H1 linker histones: multifunctional proteins beyond the nucleosomal core particle , 2015, EMBO reports.
[32] K. Ginalski,et al. A Specialized Histone H1 Variant Is Required for Adaptive Responses to Complex Abiotic Stress and Related DNA Methylation in Arabidopsis1[OPEN] , 2015, Plant Physiology.
[33] L. Hennig,et al. Keeping the gate closed: functions of the polycomb repressive complex PRC2 in development. , 2015, The Plant journal : for cell and molecular biology.
[34] S. Brady,et al. PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis , 2015, Nature Plants.
[35] C. Bowler,et al. Light signaling controls nuclear architecture reorganization during seedling establishment , 2015, Proceedings of the National Academy of Sciences.
[36] Xiaoyun Liu,et al. Regulation of Histone Methylation and Reprogramming of Gene Expression in the Rice Inflorescence Meristem , 2015, Plant Cell.
[37] C. Baroux,et al. Chromatin dynamics in pollen mother cells underpin a common scenario at the somatic-to-reproductive fate transition of both the male and female lineages in Arabidopsis , 2015, Front. Plant Sci..
[38] Gunnar Rätsch,et al. MMR: a tool for read multi-mapper resolution , 2015, bioRxiv.
[39] M. Garcia-Parajo,et al. Chromatin Fibers Are Formed by Heterogeneous Groups of Nucleosomes In Vivo , 2015, Cell.
[40] Caroline Dean,et al. Nuclear organization changes and the epigenetic silencing of FLC during vernalization. , 2015, Journal of molecular biology.
[41] J. Mozziconacci,et al. The polymorphisms of the chromatin fiber , 2015, Journal of physics. Condensed matter : an Institute of Physics journal.
[42] Matthew E. Ritchie,et al. limma powers differential expression analyses for RNA-sequencing and microarray studies , 2015, Nucleic acids research.
[43] A. Pendle,et al. Cell Differentiation and Development in Arabidopsis Are Associated with Changes in Histone Dynamics at the Single-Cell Level[W][OPEN] , 2014, Plant Cell.
[44] Célia Baroux,et al. Chromatin dynamics during plant sexual reproduction , 2014, Front. Plant Sci..
[45] Yevhen Vainshtein,et al. Regulation of the Nucleosome Repeat Length In Vivo by the DNA Sequence, Protein Concentrations and Long-Range Interactions , 2014, PLoS Comput. Biol..
[46] X. Gu,et al. A histone H3 lysine-27 methyltransferase complex represses lateral root formation in Arabidopsis thaliana. , 2014, Molecular plant.
[47] Joana Sequeira-Mendes,et al. The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States[C][W] , 2014, Plant Cell.
[48] Hai Huang,et al. ISWI proteins participate in the genome-wide nucleosome distribution in Arabidopsis. , 2014, The Plant journal : for cell and molecular biology.
[49] J. Goodrich,et al. Arabidopsis guard cell integrity involves the epigenetic stabilization of the FLP and FAMA transcription factor genes. , 2014, The Plant journal : for cell and molecular biology.
[50] Brian Bushnell,et al. BBMap: A Fast, Accurate, Splice-Aware Aligner , 2014 .
[51] Remco Loos,et al. Citrullination regulates pluripotency and histone H1 binding to chromatin , 2014, Nature.
[52] W. Shen,et al. Arabidopsis AL PHD-PRC1 Complexes Promote Seed Germination through H3K4me3-to-H3K27me3 Chromatin State Switch in Repression of Seed Developmental Genes , 2014, PLoS genetics.
[53] Hongwei Wu,et al. High-Resolution Mapping of H 1 Linker Histone Variants in Embryonic Stem Cells , 2014 .
[54] Laura K. Bianchi,et al. Nanoscale changes in chromatin organization represent the initial steps of tumorigenesis: a transmission electron microscopy study , 2014, BMC Cancer.
[55] Yaoqi Zhou,et al. Structural insights into the histone H1-nucleosome complex , 2013, Proceedings of the National Academy of Sciences.
[56] P. Benfey,et al. To branch or not to branch: the role of pre-patterning in lateral root formation , 2013, Development.
[57] C. Baroux,et al. Chromatin reprogramming during the somatic-to-reproductive cell fate transition in plants , 2013, Development.
[58] G. Hannon,et al. Drosophila H1 Regulates the Genetic Activity of Heterochromatin by Recruitment of Su(var)3-9 , 2013, Science.
[59] Karan Uppal,et al. High-Resolution Mapping of H1 Linker Histone Variants in Embryonic Stem Cells , 2013, PLoS genetics.
[60] D. Coleman-Derr,et al. The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin , 2013, Cell.
[61] Christophe Godin,et al. Lateral root morphogenesis is dependent on the mechanical properties of the overlaying tissues , 2013, Proceedings of the National Academy of Sciences.
[62] Zhaoyu Li,et al. DANPOS: Dynamic analysis of nucleosome position and occupancy by sequencing , 2013, Genome research.
[63] Alessandra M. Sullivan,et al. Molecular mechanisms of robustness in plants. , 2013, Current opinion in plant biology.
[64] Seung-Min Yang,et al. H1 linker histone promotes epigenetic silencing by regulating both DNA methylation and histone H3 methylation , 2013, Proceedings of the National Academy of Sciences.
[65] D. Bergmann,et al. Stomatal development: a plant's perspective on cell polarity, cell fate transitions and intercellular communication , 2012, Development.
[66] D. Patel,et al. Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants , 2012, Cell.
[67] C. Braud,et al. Histone H1 affects gene imprinting and DNA methylation in Arabidopsis. , 2012, The Plant journal : for cell and molecular biology.
[68] Chongsheng He,et al. Reprogramming of H3K27me3 Is Critical for Acquisition of Pluripotency from Cultured Arabidopsis Tissues , 2012, PLoS genetics.
[69] Johannes E. Schindelin,et al. Fiji: an open-source platform for biological-image analysis , 2012, Nature Methods.
[70] M. Seo,et al. The Time Required for Dormancy Release in Arabidopsis Is Determined by DELAY OF GERMINATION1 Protein Levels in Freshly Harvested Seeds[OA] , 2012, Plant Cell.
[71] Michael Schubert,et al. Short nucleosome repeats impose rotational modulations on chromatin fibre folding , 2012, The EMBO journal.
[72] Po-yi Ho,et al. Histone H1 Depletion Impairs Embryonic Stem Cell Differentiation , 2012, PLoS Genetics.
[73] Jim Haseloff,et al. High-resolution live imaging of plant growth in near physiological bright conditions using light sheet fluorescence microscopy. , 2011, The Plant journal : for cell and molecular biology.
[74] O. Clarenz,et al. Dynamic Regulation of H3K27 Trimethylation during Arabidopsis Differentiation , 2011, PLoS genetics.
[75] Arp Schnittger,et al. Polycomb Repressive Complex 2 Controls the Embryo-to-Seedling Phase Transition , 2011, PLoS genetics.
[76] Galt P. Barber,et al. BigWig and BigBed: enabling browsing of large distributed datasets , 2010, Bioinform..
[77] M. Pellegrini,et al. Relationship between nucleosome positioning and DNA methylation , 2010, Nature.
[78] Philippe Andrey,et al. Statistical Analysis of 3D Images Detects Regular Spatial Distributions of Centromeres and Chromocenters in Animal and Plant Nuclei , 2010, PLoS Comput. Biol..
[79] R. Ghosh,et al. Chromatin higher-order structure and dynamics. , 2010, Cold Spring Harbor perspectives in biology.
[80] Aaron R. Quinlan,et al. BIOINFORMATICS APPLICATIONS NOTE , 2022 .
[81] H. de Jong,et al. Immunocytological analysis of chromatin in isolated nuclei. , 2010, Methods in molecular biology.
[82] M. Robinson,et al. A scaling normalization method for differential expression analysis of RNA-seq data , 2010, Genome Biology.
[83] Sandrine Dudoit,et al. Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments , 2010, BMC Bioinformatics.
[84] A. Skoultchi,et al. Linker histone H1 is essential for Drosophila development, the establishment of pericentric heterochromatin, and a normal polytene chromosome structure. , 2009, Genes & development.
[85] M. Beato,et al. Depletion of Human Histone H1 Variants Uncovers Specific Roles in Gene Expression and Cell Growth , 2008, PLoS genetics.
[86] D. Rhodes,et al. Nucleosome repeat length and linker histone stoichiometry determine chromatin fiber structure , 2008, Proceedings of the National Academy of Sciences.
[87] B. Williams,et al. Mapping and quantifying mammalian transcriptomes by RNA-Seq , 2008, Nature Methods.
[88] Michael B. Stadler,et al. MicroRNA-Mediated Regulation of Stomatal Development in Arabidopsis[W][OA] , 2007, The Plant Cell Online.
[89] A. Jerzmanowski,et al. SWI/SNF chromatin remodeling and linker histones in plants. , 2007, Biochimica et biophysica acta.
[90] R. van Driel,et al. Light-regulated large-scale reorganization of chromatin during the floral transition in Arabidopsis. , 2007, The Plant journal : for cell and molecular biology.
[91] Matteo Pellegrini,et al. Whole-Genome Analysis of Histone H3 Lysine 27 Trimethylation in Arabidopsis , 2007, PLoS biology.
[92] V. Gaudin,et al. Large-scale dissociation and sequential reassembly of pericentric heterochromatin in dedifferentiated Arabidopsis cells , 2007, Journal of Cell Science.
[93] M. Robertson,et al. The Arabidopsis thaliana vernalization response requires a polycomb-like protein complex that also includes VERNALIZATION INSENSITIVE 3 , 2006, Proceedings of the National Academy of Sciences.
[94] Cyrus Martin,et al. Substrate Preferences of the EZH2 Histone Methyltransferase Complex* , 2006, Journal of Biological Chemistry.
[95] A. Stein,et al. Histone H1 Depletion in Mammals Alters Global Chromatin Structure but Causes Specific Changes in Gene Regulation , 2005, Cell.
[96] Michael Bustin,et al. The dynamics of histone H1 function in chromatin. , 2005, Molecular cell.
[97] A. Wierzbicki,et al. Suppression of Histone H1 Genes in Arabidopsis Results in Heritable Developmental Defects and Stochastic Changes in DNA Methylation , 2005, Genetics.
[98] A. Probst,et al. Chromatin techniques for plant cells. , 2004, The Plant journal : for cell and molecular biology.
[99] P. Mourrain,et al. Arabidopsis Histone Deacetylase HDA6 Is Required for Maintenance of Transcriptional Gene Silencing and Determines Nuclear Organization of rDNA Repeats , 2004, The Plant Cell Online.
[100] Tom Misteli,et al. Measurement of dynamic protein binding to chromatin in vivo, using photobleaching microscopy. , 2004, Methods in enzymology.
[101] Gustavo Carrero,et al. Quantification of protein-protein and protein-DNA interactions in vivo, using fluorescence recovery after photobleaching. , 2004, Methods in enzymology.
[102] M. Labouesse. [Caenorhabditis elegans]. , 2003, Medecine sciences : M/S.
[103] S. Jacobsen,et al. DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis , 2002, The EMBO journal.
[104] Ingo Schubert,et al. Interphase chromosomes in Arabidopsis are organized as well defined chromocenters from which euchromatin loops emanate , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[105] Alex E. Lash,et al. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository , 2002, Nucleic Acids Res..
[106] B. Turcotte,et al. Decreased Expression of Specific Genes in Yeast Cells Lacking Histone H1* , 2001, The Journal of Biological Chemistry.
[107] E. Schulze,et al. A single histone H1 isoform (H1.1) is essential for chromatin silencing and germline development in Caenorhabditis elegans. , 2001, Development.
[108] J. Dacks,et al. Origin of H1 linker histones , 2001, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[109] A. Jerzmanowski,et al. Linker Histones and HMG1 Proteins of Higher Plants , 2000 .
[110] J. Ausió. Are linker histones (histone H1) dispensable for survival? , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.
[111] S. Clough,et al. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. , 1998, The Plant journal : for cell and molecular biology.
[112] D. Landsman,et al. The Biochemical and Phenotypic Characterization of Hho1p, the Putative Linker Histone H1 of Saccharomyces cerevisiae * , 1998, The Journal of Biological Chemistry.
[113] H. Bussey,et al. Histone H1 in Saccharomyces cerevisiae , 1997, Yeast.
[114] P. Benfey,et al. Organization and cell differentiation in lateral roots of Arabidopsis thaliana. , 1997, Development.
[115] A. Jerzmanowski,et al. Histone H1 overexpressed to high level in tobacco affects certain developmental programs but has limited effect on basal cellular functions. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[116] Xuetong Shen,et al. Linker Histone H1 Regulates Specific Gene Expression but Not Global Transcription In Vivo , 1996, Cell.
[117] S. Bavykin,et al. Alterations in Nucleosome Core Structure in Linker Histone-depleted Chromatin (*) , 1996, The Journal of Biological Chemistry.
[118] Xuetong Shen,et al. Linker histories are not essential and affect chromatin condensation in vivo , 1995, Cell.
[119] P. Chomczyński,et al. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. , 1987, Analytical biochemistry.