Evolution and Biological Roles of Alternative 3'UTRs.
暂无分享,去创建一个
[1] Jane Mitchell,et al. The RNA-binding protein Musashi-1 regulates neural development through the translational repression of p21WAF-1 , 2006, Molecular and Cellular Neuroscience.
[2] G. Karypis,et al. Conserved GU-rich elements mediate mRNA decay by binding to CUG-binding protein 1. , 2008, Molecular cell.
[3] P. Hordijk,et al. Rac1‐induced cell migration requires membrane recruitment of the nuclear oncogene SET , 2007, The EMBO journal.
[4] G. Dreyfuss,et al. In vivo and in vitro arginine methylation of RNA-binding proteins , 1995, Molecular and cellular biology.
[5] E. Fogarty,et al. Systematic analysis of the Hmga2 3′ UTR identifies many independent regulatory sequences and a novel interaction between distal sites , 2015, RNA.
[6] J. Harrow,et al. Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes , 2014, Human molecular genetics.
[7] R. Elkon,et al. E2F mediates enhanced alternative polyadenylation in proliferation , 2012, Genome Biology.
[8] Paul S. Russo,et al. Phase Transitions in the Assembly of MultiValent Signaling Proteins , 2016 .
[9] Christine Mayr,et al. Alternative 3'UTRs act as scaffolds to regulate membrane protein localization , 2015, Nature.
[10] Mihaela Zavolan,et al. Genome-wide analysis of pre-mRNA 3' end processing reveals a decisive role of human cleavage factor I in the regulation of 3' UTR length. , 2012, Cell reports.
[11] C. Dani,et al. Extreme instability of myc mRNA in normal and transformed human cells. , 1984, Proceedings of the National Academy of Sciences of the United States of America.
[12] C. Y. Chen,et al. AU-rich elements: characterization and importance in mRNA degradation. , 1995, Trends in biochemical sciences.
[13] James B. Brown,et al. Global patterns of tissue-specific alternative polyadenylation in Drosophila. , 2012, Cell reports.
[14] J. Derisi,et al. Cis-acting determinants of asymmetric, cytoplasmic RNA transport. , 2007, RNA.
[15] W. Gilbert,et al. Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells , 2014, Nature.
[16] Wenwei Zhang,et al. Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome , 2012, Nature Biotechnology.
[17] Philip M. Kim,et al. The role of disorder in interaction networks: a structural analysis , 2008, Molecular systems biology.
[18] Qiangfeng Cliff Zhang,et al. Systematic Discovery of Xist RNA Binding Proteins , 2015, Cell.
[19] D. Bartel,et al. Global analyses of the effect of different cellular contexts on microRNA targeting. , 2014, Molecular cell.
[20] G. Stoecklin,et al. A novel mechanism of tumor suppression by destabilizing AU-rich growth factor mRNA , 2003, Oncogene.
[21] Michael M. Mwangi,et al. Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA editing targets in transcript 3′ UTRs , 2010, Nature Structural &Molecular Biology.
[22] Subhajyoti De,et al. Cellular crowding imposes global constraints on the chemistry and evolution of proteomes , 2012, Proceedings of the National Academy of Sciences.
[23] J. Goeman,et al. Poly(A) binding protein nuclear 1 levels affect alternative polyadenylation , 2012, Nucleic acids research.
[24] Julie L. Yang,et al. Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression , 2013, Genes & development.
[25] B. Tian,et al. Alternative cleavage and polyadenylation: the long and short of it. , 2013, Trends in biochemical sciences.
[26] A. Coulson,et al. Genomics in C. elegans: so many genes, such a little worm. , 2005, Genome research.
[27] L. Paillard,et al. AU-rich elements and associated factors: are there unifying principles? , 2006, Nucleic acids research.
[28] R. Lehmann,et al. oskar organizes the germ plasm and directs localization of the posterior determinant nanos , 1991, Cell.
[29] M. Levine,et al. ELAV mediates 3' UTR extension in the Drosophila nervous system. , 2012, Genes & development.
[30] T. Babak,et al. A quantitative atlas of polyadenylation in five mammals , 2012, Genome research.
[31] Richard Bonneau,et al. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. , 2012, Molecular cell.
[32] Wencheng Li,et al. RBBP6 isoforms regulate the human polyadenylation machinery and modulate expression of mRNAs with AU-rich 3′ UTRs , 2014, Genes & development.
[33] G. Dreyfuss,et al. RNA-binding proteins as regulators of gene expression. , 1997, Current opinion in genetics & development.
[34] G. Dreyfuss,et al. RNA-binding proteins as developmental regulators. , 1989, Genes & development.
[35] Jimin Pei,et al. Cell-free Formation of RNA Granules: Low Complexity Sequence Domains Form Dynamic Fibers within Hydrogels , 2012, Cell.
[36] D. Bentley. Coupling mRNA processing with transcription in time and space , 2014, Nature Reviews Genetics.
[37] Vicent Pelechano,et al. Single-cell polyadenylation site mapping reveals 3′ isoform choice variability , 2015, Molecular systems biology.
[38] D. Niessing,et al. Of social molecules: The interactive assembly of ASH1 mRNA-transport complexes in yeast , 2014, RNA biology.
[39] B. Tian,et al. Progressive lengthening of 3′ untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development , 2009, Proceedings of the National Academy of Sciences.
[40] N. Rajewsky,et al. Cell-type-specific signatures of microRNAs on target mRNA expression. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[41] Michael Benatar,et al. Prion-like domain mutations in hnRNPs cause multisystem proteinopathy and ALS , 2013, Nature.
[42] M. Greenberg,et al. New Insights in the Biology of BDNF Synthesis and Release: Implications in CNS Function , 2009, The Journal of Neuroscience.
[43] R. A. Hall,et al. Enhancement of the surface expression of G protein-coupled receptors. , 2009, Trends in biotechnology.
[44] Timothy D. Craggs,et al. Phase Transition of a Disordered Nuage Protein Generates Environmentally Responsive Membraneless Organelles , 2015, Molecular cell.
[45] R. Elkon,et al. Alternative cleavage and polyadenylation: extent, regulation and function , 2013, Nature Reviews Genetics.
[46] J. V. Moran,et al. Initial sequencing and analysis of the human genome. , 2001, Nature.
[47] Brita Fritsch,et al. Distinct 3′UTRs differentially regulate activity-dependent translation of brain-derived neurotrophic factor (BDNF) , 2010, Proceedings of the National Academy of Sciences.
[48] G. Brewer,et al. Competitive binding of AUF1 and TIAR to MYC mRNA controls its translation , 2007, Nature Structural &Molecular Biology.
[49] J. Steitz,et al. Overexpression of HuR, a nuclear–cytoplasmic shuttling protein, increases the in vivo stability of ARE‐containing mRNAs , 1998, The EMBO journal.
[50] Jimin Pei,et al. Cell-free Formation of RNA Granules: Bound RNAs Identify Features and Components of Cellular Assemblies , 2012, Cell.
[51] Chong-Jian Chen,et al. Differential genome-wide profiling of tandem 3' UTRs among human breast cancer and normal cells by high-throughput sequencing. , 2011, Genome research.
[52] E. Izaurralde,et al. Towards a molecular understanding of microRNA-mediated gene silencing , 2015, Nature Reviews Genetics.
[53] Gabriele Varani,et al. RNA is rarely at a loss for companions; as soon as RNA , 2008 .
[54] N. Woo,et al. Distinct Role of Long 3′ UTR BDNF mRNA in Spine Morphology and Synaptic Plasticity in Hippocampal Neurons , 2008, Cell.
[55] O. Elemento,et al. Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons , 2012, Cell.
[56] J. Spieth,et al. Overview of gene structure in C. elegans. , 2014, WormBook : the online review of C. elegans biology.
[57] C. Burge,et al. 3′ UTR-isoform choice has limited influence on the stability and translational efficiency of most mRNAs in mouse fibroblasts , 2013, Genome research.
[58] Peter J. Shepard,et al. Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq. , 2011, RNA.
[59] Larry N. Singh,et al. U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation , 2010, Nature.
[60] M. Greenberg,et al. Regulation of proto-oncogene mRNA stability. , 1992, Biochimica et biophysica acta.
[61] Xiaohui S. Xie,et al. Fip1 regulates mRNA alternative polyadenylation to promote stem cell self‐renewal , 2014, The EMBO journal.
[62] H. Meijer,et al. Mechanisms of translational control by the 3' UTR in development and differentiation. , 2005, Seminars in cell & developmental biology.
[63] Norman E. Davey,et al. Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins , 2012, Cell.
[64] A. Riccio,et al. To localize or not to localize: mRNA fate is in 3'UTR ends. , 2009, Trends in cell biology.
[65] E. van Nimwegen,et al. Global 3′ UTR shortening has a limited effect on protein abundance in proliferating T cells , 2014, Nature Communications.
[66] M. Kupiec,et al. Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq , 2012, Nature.
[67] G. Yehia,et al. Analysis of alterative cleavage and polyadenylation by 3′ region extraction and deep sequencing , 2012, Nature Methods.
[68] P. Sharp,et al. Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites , 2008, Science.
[69] G. Brewer,et al. An A + U-rich element RNA-binding factor regulates c-myc mRNA stability in vitro , 1991, Molecular and cellular biology.
[70] Maxwell R. Mumbach,et al. Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA , 2014, Cell.
[71] J. Thornton,et al. Diversity of protein–protein interactions , 2003, The EMBO journal.
[72] Patrice M. Milos,et al. An in-depth map of polyadenylation sites in cancer , 2012, Nucleic acids research.
[73] R. Singer,et al. Localization of ASH1 mRNA particles in living yeast. , 1998, Molecular cell.
[74] K. Lukong,et al. Sam68, the KH domain-containing superSTAR. , 2003, Biochimica et biophysica acta.
[75] Pedro G. Ferreira,et al. CPEB1 coordinates alternative 3′-UTR formation with translational regulation , 2013, Nature.
[76] M. Levine,et al. ELAV links paused Pol II to alternative polyadenylation in the Drosophila nervous system. , 2015, Molecular cell.
[77] Tyson A. Clark,et al. HITS-CLIP yields genome-wide insights into brain alternative RNA processing , 2008, Nature.
[78] Octavio A. Quiñones,et al. 3′UTR elements inhibit Ras‐induced C/EBPβ post‐translational activation and senescence in tumour cells , 2011, The EMBO journal.
[79] M. Gorospe,et al. Translational Repression by RNA-Binding Protein TIAR , 2006, Molecular and Cellular Biology.
[80] Larry N. Singh,et al. U1 snRNP Determines mRNA Length and Regulates Isoform Expression , 2012, Cell.
[81] Arne Klungland,et al. A majority of m6A residues are in the last exons, allowing the potential for 3′ UTR regulation , 2015, Genes & development.
[82] D. Gallie. Faculty Opinions recommendation of The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3. , 2015 .
[83] Chaolin Zhang,et al. Loss of MBNL leads to disruption of developmentally regulated alternative polyadenylation in RNA-mediated disease. , 2014, Molecular cell.
[84] M. Gorospe,et al. RNA-binding protein HuR enhances p53 translation in response to ultraviolet light irradiation , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[85] C. Sunkel,et al. RNA polymerase II kinetics in polo polyadenylation signal selection , 2011, The EMBO journal.
[86] Tom H. Cheung,et al. Alternative polyadenylation mediates microRNA regulation of muscle stem cell function. , 2012, Cell stem cell.
[87] Alex T. Kalinka,et al. Systematic imaging reveals features and changing localization of mRNAs in Drosophila development , 2014, bioRxiv.
[88] B. Tian,et al. RNA-binding proteins in regulation of alternative cleavage and polyadenylation. , 2014, Advances in experimental medicine and biology.
[89] Wei Li,et al. CFIm25 links Alternative Polyadenylation to Glioblastoma Tumor Suppression , 2014, Nature.
[90] L. Steinmetz,et al. Alternative polyadenylation diversifies post‐transcriptional regulation by selective RNA–protein interactions , 2014, Molecular Systems Biology.
[91] Vicent Pelechano,et al. Genome-wide polyadenylation site mapping. , 2012, Methods in enzymology.
[92] Charles R. Tessier,et al. Mammary Tumor Induction in Transgenic Mice Expressing an RNA-Binding Protein , 2004, Cancer Research.
[93] Lan V. Zhang,et al. Evidence for dynamically organized modularity in the yeast protein–protein interaction network , 2004, Nature.
[94] D. Bartel,et al. Formation, Regulation and Evolution of Caenorhabditis elegans 3′UTRs , 2010, Nature.
[95] Steven W. Flavell,et al. Genome-Wide Analysis of MEF2 Transcriptional Program Reveals Synaptic Target Genes and Neuronal Activity-Dependent Polyadenylation Site Selection , 2008, Neuron.
[96] J. Steitz,et al. Protein Ligands to Hur Modulate Its Interaction with Target Mrnas in Vivo , 2000, The Journal of cell biology.
[97] Sergei Maslov,et al. Constraints imposed by non-functional protein–protein interactions on gene expression and proteome size , 2008, Molecular systems biology.
[98] Saeed Tavazoie,et al. Systematic identification of regulatory elements in conserved 3' UTRs of human transcripts. , 2014, Cell reports.
[99] Kevin Struhl,et al. Global Analysis of mRNA Isoform Half-Lives Reveals Stabilizing and Destabilizing Elements in Yeast , 2014, Cell.
[100] L. Steinmetz,et al. Extensive transcriptional heterogeneity revealed by isoform profiling , 2013, Nature.
[101] D. Bartel,et al. Extensive alternative polyadenylation during zebrafish development , 2012, Genome research.
[102] C. Brangwynne,et al. Getting RNA and Protein in Phase , 2012, Cell.
[103] Bin Tian,et al. A large-scale analysis of mRNA polyadenylation of human and mouse genes , 2005, Nucleic acids research.
[104] D. Bartel. MicroRNAs: Target Recognition and Regulatory Functions , 2009, Cell.
[105] R. Elkon,et al. The Poly(A)-Binding Protein Nuclear 1 Suppresses Alternative Cleavage and Polyadenylation Sites , 2012, Cell.
[106] C. Mayr,et al. Widespread Shortening of 3′UTRs by Alternative Cleavage and Polyadenylation Activates Oncogenes in Cancer Cells , 2009, Cell.