Personalised genetic intervention for Duchenne muscular dystrophy: antisense oligomers and exon skipping.

Duchenne muscular dystrophy (DMD) arises from protein-truncating mutations in the large dystrophin gene that preclude synthesis of a functional protein that primarily stabilizes muscle fibre membranes. The absence of dystrophin leads to this most common and serious form of childhood muscle-wasting. Since the identification of the dystrophin gene in 1987, cell and gene repair or replacement therapies have been evaluated for DMD treatment and one genetic intervention, exon skipping, is now in clinical trials. Antisense oligomers have been designed to redirect dystrophin splicing patterns so that targeted exons may be removed from a defective dystrophin pre-mRNA to either restore the reading frame of a deletion, or excise an in-frame exon corrupted by a nonsense mutation or micro-insertion/deletion. This review discusses the evolution of oligomer induced exon skipping, including in vitro applications, evaluation of different oligomer chemistries, the treatment of animal models and alternative exon skipping strategies involving viral expression cassettes and ex vivo manipulation of stem cells. The discussion culminates with the current clinical trials and the great challenges that lie ahead. The major obstacle to the implementation of personalised genetic treatments to address the many different mutations that can lead to DMD, are considered to be establishing effective treatments for the different patients and their mutations. Furthermore, the view of regulatory authorities in assessing preclinical data on potentially scores of different but class-specific compounds will be of paramount importance in expediting the clinical application of exon skipping therapy for this serious and relentlessly progressive muscle wasting disease.

[1]  T. Maniatis,et al.  Multilevel Regulation of Gene Expression by MicroRNAs , 2008, Science.

[2]  F. Holsboer,et al.  Neuronal actions of glucocorticoids: Focus on depression , 2008, The Journal of Steroid Biochemistry and Molecular Biology.

[3]  R. Finkel,et al.  DMD pseudoexon mutations: splicing efficiency, phenotype, and potential therapy , 2008, Annals of neurology.

[4]  M. Wood,et al.  Effective exon skipping and restoration of dystrophin expression by peptide nucleic acid antisense oligonucleotides in mdx mice. , 2008, Molecular therapy : the journal of the American Society of Gene Therapy.

[5]  Johan T den Dunnen,et al.  Local dystrophin restoration with antisense oligonucleotide PRO051. , 2007, The New England journal of medicine.

[6]  N. Bresolin,et al.  Restoration of human dystrophin following transplantation of exon-skipping-engineered DMD patient stem cells into dystrophic mice. , 2007, Cell stem cell.

[7]  Rolf Backofen,et al.  Pre-mRNA Secondary Structures Influence Exon Recognition , 2007, PLoS genetics.

[8]  I. Graham,et al.  Comparative analysis of antisense oligonucleotide sequences for targeted skipping of exon 51 during dystrophin pre-mRNA splicing in human muscle. , 2007, Human gene therapy.

[9]  G. van Ommen,et al.  Antisense-mediated exon skipping: a versatile tool with therapeutic and research applications. , 2007, RNA.

[10]  Guey-Shin Wang,et al.  Splicing in disease: disruption of the splicing code and the decoding machinery , 2007, Nature Reviews Genetics.

[11]  P. Iversen,et al.  Morpholino oligomer-mediated exon skipping averts the onset of dystrophic pathology in the mdx mouse. , 2007, Molecular therapy : the journal of the American Society of Gene Therapy.

[12]  Christopher P. Bonin,et al.  High-lysine corn generated by endosperm-specific suppression of lysine catabolism using RNAi. , 2007, Plant biotechnology journal.

[13]  N. Corbi,et al.  Utrophin Up-Regulation by an Artificial Transcription Factor in Transgenic Mice , 2007, PloS one.

[14]  P. Iversen,et al.  Bmc Molecular Biology Antisense Oligonucleotide Induced Exon Skipping and the Dystrophin Gene Transcript: Cocktails and Chemistries , 2022 .

[15]  N. Bresolin,et al.  Autologous Transplantation of Muscle-Derived CD133+ Stem Cells in Duchenne Muscle Patients , 2007, Cell transplantation.

[16]  Meenal Patel,et al.  PTC124 targets genetic disorders caused by nonsense mutations , 2007, Nature.

[17]  M. Stecker,et al.  The sarcoglycan complex in Schwann cells and its role in myelin stability , 2007, Experimental Neurology.

[18]  M. Stanton,et al.  Cystic fibrosis mortality and survival in the UK: 1947–2003 , 2007, European Respiratory Journal.

[19]  J. Chamberlain,et al.  Viral-mediated gene therapy for the muscular dystrophies: successes, limitations and recent advances. , 2007, Biochimica et biophysica acta.

[20]  M. Schwartz,et al.  Deletion of exon 16 of the dystrophin gene is not associated with disease , 2007, Human mutation.

[21]  Christophe Béroud,et al.  Multiexon skipping leading to an artificial DMD protein lacking amino acids from exons 45 through 55 could rescue up to 63% of patients with Duchenne muscular dystrophy , 2007, Human mutation.

[22]  J. Rousseau,et al.  Autologous transplantation of muscle precursor cells modified with a lentivirus for muscular dystrophy: human cells and primate models. , 2007, Molecular therapy : the journal of the American Society of Gene Therapy.

[23]  C. Bell,et al.  Measurement of the clinical utility of a combined mutation detection protocol in carriers of Duchenne and Becker muscular dystrophy , 2007, Journal of Medical Genetics.

[24]  S. Wilton,et al.  The influence of antisense oligonucleotide length on dystrophin exon skipping. , 2007, Molecular therapy : the journal of the American Society of Gene Therapy.

[25]  H. Deckmyn,et al.  False positive results in chimeraplasty for von Willebrand Disease. , 2007, Thrombosis research.

[26]  G. Schmitz Drug evaluation: OGX-011, a clusterin-inhibiting antisense oligonucleotide. , 2006, Current opinion in molecular therapeutics.

[27]  S. Fortuni,et al.  Functional and morphological recovery of dystrophic muscles in mice treated with deacetylase inhibitors , 2006, Nature Medicine.

[28]  G. van Ommen,et al.  Exploring the frontiers of therapeutic exon skipping for Duchenne muscular dystrophy by double targeting within one or multiple exons. , 2006, Molecular therapy : the journal of the American Society of Gene Therapy.

[29]  Michael Q. Zhang,et al.  An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. , 2006, Human molecular genetics.

[30]  G. van Ommen,et al.  Entries in the Leiden Duchenne muscular dystrophy mutation database: An overview of mutation types and paradoxical cases that confirm the reading‐frame rule , 2006, Muscle & nerve.

[31]  Y. Takeshima,et al.  Intravenous Infusion of an Antisense Oligonucleotide Results in Exon Skipping in Muscle Dystrophin mRNA of Duchenne Muscular Dystrophy , 2006, Pediatric Research.

[32]  A. Musarò,et al.  Body-wide gene therapy of Duchenne muscular dystrophy in the mdx mouse model. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[33]  S. Wilton,et al.  Dystrophin expression in the mdx mouse after localised and systemic administration of a morpholino antisense oligonucleotide , 2006, The journal of gene medicine.

[34]  A. Rabinowitz,et al.  Systemic delivery of morpholino oligonucleotide restores dystrophin expression bodywide and improves dystrophic pathology , 2006, Nature Medicine.

[35]  Thomas A Rando,et al.  Enhancement of plasmid-mediated gene therapy for muscular dystrophy by directed plasmid integration. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[36]  T. Stockley,et al.  Strategy for comprehensive molecular testing for Duchenne and Becker muscular dystrophies. , 2006, Genetic testing.

[37]  G. van Ommen,et al.  Functional analysis of 114 exon-internal AONs for targeted DMD exon skipping: indication for steric hindrance of SR protein binding sites. , 2005, Oligonucleotides.

[38]  F. Rivier,et al.  Mutation spectrum leading to an attenuated phenotype in dystrophinopathies , 2005, European Journal of Human Genetics.

[39]  S. Wilton,et al.  Terminal antisense oligonucleotide modifications can enhance induced exon skipping , 2005, Neuromuscular Disorders.

[40]  Y. Takeshima,et al.  Intraperitoneal administration of phosphorothioate antisense oligodeoxynucleotide against splicing enhancer sequence induced exon skipping in dystrophin mRNA expressed in mdx skeletal muscle , 2005, Brain and Development.

[41]  J. Bourke,et al.  The multidisciplinary management of Duchenne muscular dystrophy , 2005 .

[42]  Thomas W Prior,et al.  Experience and strategy for the molecular testing of Duchenne muscular dystrophy. , 2005, The Journal of molecular diagnostics : JMD.

[43]  P. Sharp,et al.  Transcriptional silencing of a transgene by RNAi in the soma of C. elegans. , 2005, Genes & development.

[44]  A. Rabinowitz,et al.  Systemic delivery of antisense oligoribonucleotide restores dystrophin expression in body-wide skeletal muscles. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[45]  Luis Garcia,et al.  Rescue of Dystrophic Muscle Through U7 snRNA-Mediated Exon Skipping , 2004, Science.

[46]  Y. Takeshima,et al.  Chimeric RNA/ethylene-bridged nucleic acids promote dystrophin expression in myocytes of duchenne muscular dystrophy by inducing skipping of the nonsense mutation-encoding exon. , 2004, Human gene therapy.

[47]  Y. Takeshima,et al.  Chimeric RNA and 2'-O, 4'-C-ethylene-bridged nucleic acids have stronger activity than phosphorothioate oligodeoxynucleotides in induction of exon 19 skipping in dystrophin mRNA. , 2004, Oligonucleotides.

[48]  J. Mendell,et al.  Three‐tiered noninvasive diagnosis in 96% of patients with Duchenne muscular dystrophy (DMD) , 2004, Human mutation.

[49]  D. Ittig,et al.  Nuclear antisense effects in cyclophilin A pre-mRNA splicing by oligonucleotides: a comparison of tricyclo-DNA with LNA. , 2004, Nucleic acids research.

[50]  G. van Ommen,et al.  Antisense-induced multiexon skipping for Duchenne muscular dystrophy makes more sense. , 2004, American journal of human genetics.

[51]  S. Wilton,et al.  Enhanced in vivo delivery of antisense oligonucleotides to restore dystrophin expression in adult mdx mouse muscle , 2003, FEBS letters.

[52]  S. Wilton,et al.  Morpholino antisense oligonucleotide induced dystrophin exon 23 skipping in mdx mouse muscle. , 2003, Human molecular genetics.

[53]  C. Mann,et al.  Functional amounts of dystrophin produced by skipping the mutated exon in the mdx dystrophic mouse , 2003, Nature Medicine.

[54]  B. Cisneros,et al.  Differential expression and subcellular distribution of dystrophin Dp71 isoforms during differentiation process , 2003, Neuroscience.

[55]  T. Rando,et al.  Restoration of dystrophin expression in mdx muscle cells by chimeraplast-mediated exon skipping. , 2003, Human molecular genetics.

[56]  F. Baas,et al.  Therapeutic antisense-induced exon skipping in cultured muscle cells from six different DMD patients. , 2003, Human molecular genetics.

[57]  Christof von Kalle,et al.  A serious adverse event after successful gene therapy for X-linked severe combined immunodeficiency. , 2003, The New England journal of medicine.

[58]  C. Mann,et al.  Improved antisense oligonucleotide induced exon skipping in the mdx mouse model of muscular dystrophy , 2002, The journal of gene medicine.

[59]  G. V. Ommen,et al.  Targeted exon skipping as a potential gene correction therapy for Duchenne muscular dystrophy , 2002, Neuromuscular Disorders.

[60]  A. Emery Muscular dystrophy into the new millennium , 2002, Neuromuscular Disorders.

[61]  T. Rando,et al.  Dystrophin gene repair in mdx muscle precursor cells in vitro and in vivo mediated by RNA-DNA chimeric oligonucleotides. , 2002, Human gene therapy.

[62]  A. Krainer,et al.  Listening to silence and understanding nonsense: exonic mutations that affect splicing , 2002, Nature Reviews Genetics.

[63]  Andrew P. Weir,et al.  Function and genetics of dystrophin and dystrophin-related proteins in muscle. , 2002, Physiological reviews.

[64]  Y. Takeshima,et al.  Oligonucleotides against a splicing enhancer sequence led to dystrophin production in muscle cells from a Duchenne muscular dystrophy patient , 2001, Brain and Development.

[65]  R. Mutani,et al.  Late onset and very mild course of Xp21 Becker type muscular dystrophy. , 2001, Clinical neuropathology.

[66]  F. Baas,et al.  Antisense-induced exon skipping restores dystrophin expression in DMD patient derived muscle cells. , 2001, Human molecular genetics.

[67]  Y. Hamel,et al.  Optimization of retroviral gene transfer protocol to maintain the lymphoid potential of progenitor cells. , 2001, Human gene therapy.

[68]  C. Mann,et al.  Antisense-induced exon skipping and synthesis of dystrophin in the mdx mouse. , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[69]  J. T. Dunnen,et al.  Dystrophin nonsense mutation induces different levels of exon 29 skipping and leads to variable phenotypes within one BMD family , 2000, European Journal of Human Genetics.

[70]  R. Ross,et al.  Skeletal muscle mass and distribution in 468 men and women aged 18-88 yr. , 2000, Journal of applied physiology.

[71]  N. Keep,et al.  The structure of the N-terminal actin-binding domain of human dystrophin and how mutations in this domain may cause Duchenne or Becker muscular dystrophy. , 2000, Structure.

[72]  F. Deist,et al.  Gene therapy of human severe combined immunodeficiency (SCID)-X1 disease. , 2000, Science.

[73]  S. Wilton,et al.  Massive Idiosyncratic Exon Skipping Corrects the Nonsense Mutation in Dystrophic Mouse Muscle and Produces Functional Revertant Fibers by Clonal Expansion , 2000, The Journal of cell biology.

[74]  G. Schmajuk,et al.  Antisense Oligonucleotides with Different Backbones , 1999, The Journal of Biological Chemistry.

[75]  C. Langford,et al.  Molecular analysis of a spontaneous dystrophin `knockout' dog , 1999, Neuromuscular Disorders.

[76]  F. Muntoni,et al.  X-linked dilated cardiomyopathy and the dystrophin gene , 1999, Neuromuscular Disorders.

[77]  S. Agrawal,et al.  Specific removal of the nonsense mutation from the mdx dystrophin mRNA using antisense oligonucleotides , 1999, Neuromuscular Disorders.

[78]  L. Morandi,et al.  Development of muscle pathology in canine X-linked muscular dystrophy. I. Delayed postnatal maturation of affected and normal muscle as revealed by myosin isoform analysis and utrophin expression , 1999, Acta Neuropathologica.

[79]  E. Bertini,et al.  Giant dystrophin deletion associated with congenital cataract and mild muscular dystrophy , 1998, Neurology.

[80]  J. Gillis,et al.  Consequences of the combined deficiency in dystrophin and utrophin on the mechanical properties and myosin composition of some limb and respiratory muscles of the mouse , 1998, Neuromuscular Disorders.

[81]  M. Manoharan,et al.  Modification of splicing in the dystrophin gene in cultured Mdx muscle cells by antisense oligoribonucleotides. , 1998, Human molecular genetics.

[82]  N. Laing,et al.  Revertant fibres: a possible genetic therapy for Duchenne muscular dystrophy? , 1997, Neuromuscular Disorders.

[83]  K. Campbell,et al.  Transient expression of Dp140, a product of the Duchenne muscular dystrophy locus, during kidney tubulogenesis. , 1997, Developmental biology.

[84]  Y. Takeshima,et al.  Induction of exon skipping of the dystrophin transcript in lymphoblastoid cells by transfecting an antisense oligodeoxynucleotide complementary to an exon recognition sequence. , 1996, Biochemical and biophysical research communications.

[85]  G. Danieli,et al.  Duchenne phenotype with in‐frame deletion removing major portion of dystrophin rod: Threshold effect for deletion size? , 1996, Muscle & nerve.

[86]  H. Nishio,et al.  A Japanese boy with myalgia and cramps has a novel in‐frame deletion of the dystrophin gene , 1996, Neurology.

[87]  L. Morandi,et al.  Dystrophin characterization in BMD patients: correlation of abnormal protein with clinical phenotype , 1995, Journal of the Neurological Sciences.

[88]  T. Helliwell,et al.  Characterization of revertant muscle fibers in Duchenne muscular dystrophy, using exon-specific monoclonal antibodies against dystrophin. , 1995, American journal of human genetics.

[89]  K. Bushby,et al.  Becker muscular dystrophy with onset after 60 years , 1994, Neurology.

[90]  M. Passos-Bueno,et al.  Half the dystrophin gene is apparently enough for a mild clinical course: confirmation of its potential use for gene therapy. , 1994, Human molecular genetics.

[91]  K. Corrado,et al.  Deletion analysis of the dystrophin‐actin binding domain , 1994, FEBS letters.

[92]  N. Bresolin,et al.  Clinical variability in Becker muscular dystrophy. Genetic, biochemical and immunohistochemical correlates. , 1994, Brain : a journal of neurology.

[93]  N. Laing,et al.  Identification of a point mutation and germinal mosaicism in a duchenne muscular dystrophy family , 1994, Human mutation.

[94]  T. Vulliamy,et al.  Exon skipping and translation in patients with frameshift deletions in the dystrophin gene. , 1993, American journal of human genetics.

[95]  A. Clarke,et al.  Immunohistological evidence for second or somatic mutations as the underlying cause of dystrophin expression by isolated fibres in Xp21 muscular dystrophy of Duchenne-type severity , 1993, Journal of the Neurological Sciences.

[96]  N. Laing,et al.  Two distinct mutations in a single dystrophin gene: identification of an altered splice-site as the primary Becker muscular dystrophy mutation. , 1993, American journal of medical genetics.

[97]  K. Bushby,et al.  Functional significance of dystrophin positive fibres in Duchenne muscular dystrophy. , 1993, Archives of disease in childhood.

[98]  D. Bentley,et al.  Infidelity in the structure of ectopic transcripts: A novel exon in lymphocyte dystrophin transcripts , 1993, Human mutation.

[99]  G. Danieli,et al.  Prevalence of dystrophin-positive fibers in 85 duchenne muscular dystrophy patients , 1992, Neuromuscular Disorders.

[100]  R. Bartlett,et al.  An error in dystrophin mRNA processing in golden retriever muscular dystrophy, an animal homologue of Duchenne muscular dystrophy. , 1992, Genomics.

[101]  J. Mendell,et al.  Somatic reversion/suppression in Duchenne muscular dystrophy (DMD): evidence supporting a frame-restoring mechanism in rare dystrophin-positive fibers. , 1992, American journal of human genetics.

[102]  J. Shrager,et al.  The mdx mouse diaphragm reproduces the degenerative changes of Duchenne muscular dystrophy , 1991, Nature.

[103]  H Sugita,et al.  Exploring the molecular basis for variability among patients with Becker muscular dystrophy: dystrophin gene and protein studies. , 1991, American journal of human genetics.

[104]  H. Nishio,et al.  Exon skipping during splicing of dystrophin mRNA precursor due to an intraexon deletion in the dystrophin gene of Duchenne muscular dystrophy kobe. , 1991, The Journal of clinical investigation.

[105]  H. Nishio,et al.  A very small frame-shifting deletion within exon 19 of the Duchenne muscular dystrophy gene. , 1990, Biochemical and biophysical research communications.

[106]  L. Tsui,et al.  Mutation analysis for heterozygote detection and the prenatal diagnosis of cystic fibrosis. , 1990, The New England journal of medicine.

[107]  K. Davies,et al.  Very mild muscular dystrophy associated with the deletion of 46% of dystrophin , 1990, Nature.

[108]  I. Mcintosh,et al.  FREQUENCY OF ΔF508 MUTATION ON CYSTIC FIBROSIS CHROMOSOMES IN UK , 1989, The Lancet.

[109]  C. van Broeckhoven,et al.  Topography of the Duchenne muscular dystrophy (DMD) gene: FIGE and cDNA analysis of 194 cases reveals 115 deletions and 13 duplications. , 1989, American journal of human genetics.

[110]  L. Kunkel,et al.  The molecular basis for Duchenne versus Becker muscular dystrophy: correlation of severity with type of deletion. , 1989, American journal of human genetics.

[111]  K. Fischbeck,et al.  Familial X‐linked myalgia and cramps , 1989, Neurology.

[112]  C. van Broeckhoven,et al.  Germinal mosaicism increases the recurrence risk for 'new' Duchenne muscular dystrophy mutations. , 1989, Journal of medical genetics.

[113]  L. Kunkel,et al.  Molecular genetics of Duchenne and Becker muscular dystrophy: emphasis on improved diagnosis. , 1989, Clinical chemistry.

[114]  E A Barnard,et al.  The molecular basis of muscular dystrophy in the mdx mouse: a point mutation. , 1989, Science.

[115]  Doris M. Miller,et al.  Muscular dystrophy in a litter of golden retriever dogs , 1988, Muscle & nerve.

[116]  Jamel Chelly,et al.  Transcription of the dystrophin gene in human muscle and non-muscle tissues , 1988, Nature.

[117]  R. Waterston,et al.  Characterization of dystrophin in muscle-biopsy specimens from patients with Duchenne's or Becker's muscular dystrophy. , 1988, The New England journal of medicine.

[118]  A. Monaco,et al.  An explanation for the phenotypic differences between patients bearing partial deletions of the DMD locus. , 1988, Genomics.

[119]  M. Stephenson,et al.  Inhibition of Rous sarcoma virus replication and cell transformation by a specific oligodeoxynucleotide. , 1978, Proceedings of the National Academy of Sciences of the United States of America.

[120]  M. Stephenson,et al.  Inhibition of Rous sarcoma viral RNA translation by a specific oligodeoxyribonucleotide. , 1978, Proceedings of the National Academy of Sciences of the United States of America.