A Quantitative Tissue-Specific Landscape of Protein Redox Regulation during Aging
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Devin K. Schweppe | Edward L. Huttlin | Edward T Chouchani | S. Gygi | N. Gray | Tinghu Zhang | E. Huttlin | J. Paulo | John Szpyt | Mark P. Jedrychowski | L. P. Vaites | D. Heppner | Anita Reddy | Zhixiang He | Haopeng Xiao | Guangyan Du | Qing Yu | Jiaming Li | J. Long | E. Mills | Ryan Garrity | Edward T. Chouchani
[1] Edward T Chouchani,et al. H+ Transport is an Integral Function of the Mitochondrial ADP/ATP Carrier , 2019, Nature.
[2] Ramin Rad,et al. Full-featured, real-time database searching platform enables fast and accurate multiplexed quantitative proteomics , 2019, bioRxiv.
[3] Do Young Hyeon,et al. Evolution of the multi-tRNA synthetase complex and its role in cancer , 2019, The Journal of Biological Chemistry.
[4] E. Weerapana,et al. Cysteine reactivity across the subcellular universe. , 2019, Current opinion in chemical biology.
[5] Susan E. Abbatiello,et al. Characterization and Optimization of Multiplexed Quantitative Analyses Using High-Field Asymmetric-Waveform Ion Mobility Mass Spectrometry. , 2019, Analytical chemistry.
[6] The UniProt Consortium,et al. UniProt: a worldwide hub of protein knowledge , 2018, Nucleic Acids Res..
[7] Martin Eisenacher,et al. The PRIDE database and related tools and resources in 2019: improving support for quantification data , 2018, Nucleic Acids Res..
[8] Direct cysteine sulfenylation drives activation of the Src kinase , 2018, Nature Communications.
[9] Alexander S. Banks,et al. Accumulation of succinate controls activation of adipose tissue thermogenesis , 2018, Nature.
[10] Steven P Gygi,et al. Streamlined Tandem Mass Tag (SL-TMT) Protocol: An Efficient Strategy for Quantitative (Phospho)proteome Profiling Using Tandem Mass Tag-Synchronous Precursor Selection-MS3. , 2018, Journal of proteome research.
[11] E. Gottlieb,et al. Proteome-wide analysis of cysteine oxidation reveals metabolic sensitivity to redox stress , 2018, Nature Communications.
[12] Alison R Erickson,et al. An Internal Standard for Assessing Phosphopeptide Recovery from Metal Ion/Oxide Enrichment Strategies , 2018, Journal of The American Society for Mass Spectrometry.
[13] Shuhong Zhao,et al. Proteomic Analyses of Cysteine Redox in High-Fat-Fed and Fasted Mouse Livers: Implications for Liver Metabolic Homeostasis. , 2018, Journal of proteome research.
[14] Devin K Schweppe,et al. BioPlex Display: An Interactive Suite for Large-Scale AP-MS Protein-Protein Interaction Data. , 2018, Journal of proteome research.
[15] B. Warscheid,et al. Quantitative proteomics identifies redox switches for global translation modulation by mitochondrially produced reactive oxygen species , 2018, Nature Communications.
[16] Steven P Gygi,et al. Improved Method for Determining Absolute Phosphorylation Stoichiometry Using Bayesian Statistics and Isobaric Labeling. , 2017, Journal of proteome research.
[17] Edward T Chouchani,et al. Mitochondrial reactive oxygen species and adipose tissue thermogenesis: Bridging physiology and mechanisms , 2017, The Journal of Biological Chemistry.
[18] B. Erickson,et al. Identification and quantification of protein S-nitrosation by nitrite in the mouse heart during ischemia , 2017, The Journal of Biological Chemistry.
[19] Devin P. Sullivan,et al. A subcellular map of the human proteome , 2017, Science.
[20] Devin K. Schweppe,et al. Architecture of the human interactome defines protein communities and disease networks , 2017, Nature.
[21] J. Vinh,et al. Quantitative analysis of the cysteine redoxome by iodoacetyl tandem mass tags , 2017, Analytical and Bioanalytical Chemistry.
[22] M. Larsen,et al. Simultaneous Enrichment of Cysteine-containing Peptides and Phosphopeptides Using a Cysteine-specific Phosphonate Adaptable Tag (CysPAT) in Combination with titanium dioxide (TiO2) Chromatography* , 2016, Molecular & Cellular Proteomics.
[23] A. Holmgren,et al. Cellular Redox Systems Impact the Aggregation of Cu,Zn Superoxide Dismutase Linked to Familial Amyotrophic Lateral Sclerosis* , 2016, The Journal of Biological Chemistry.
[24] Kate S. Carroll,et al. Reactivity, Selectivity, and Stability in Sulfenic Acid Detection: A Comparative Study of Nucleophilic and Electrophilic Probes. , 2016, Bioconjugate chemistry.
[25] A. Olson,et al. Proteome-wide covalent ligand discovery in native biological systems , 2016, Nature.
[26] B. Spiegelman,et al. Mitochondrial ROS regulate thermogenic energy expenditure and sulfenylation of UCP1 , 2016, Nature.
[27] Gary D. Bader,et al. Cytoscape.js: a graph theory library for visualisation and analysis , 2015, Bioinform..
[28] The Expanding Landscape of the Thiol Redox Proteome* , 2015, Molecular & Cellular Proteomics.
[29] Edward L. Huttlin,et al. The BioPlex Network: A Systematic Exploration of the Human Interactome , 2015, Cell.
[30] L. Partridge,et al. Fasting, but Not Aging, Dramatically Alters the Redox Status of Cysteine Residues on Proteins in Drosophila melanogaster , 2015, Cell reports.
[31] Núria Queralt-Rosinach,et al. DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes , 2015, Database J. Biol. Databases Curation.
[32] N. Chandel,et al. ROS-dependent signal transduction. , 2015, Current opinion in cell biology.
[33] L. Poole. The basics of thiols and cysteines in redox biology and chemistry. , 2015, Free radical biology & medicine.
[34] Corey Gough,et al. Characterization and Optimization , 2015 .
[35] M. Ristow,et al. Unraveling the Truth About Antioxidants: Mitohormesis explains ROS-induced health benefits , 2014, Nature Medicine.
[36] Edward L. Huttlin,et al. MultiNotch MS3 Enables Accurate, Sensitive, and Multiplexed Detection of Differential Expression across Cancer Cell Line Proteomes , 2014, Analytical chemistry.
[37] T. Finkel,et al. Cellular mechanisms and physiological consequences of redox-dependent signalling , 2014, Nature Reviews Molecular Cell Biology.
[38] N. Chandel,et al. ROS Function in Redox Signaling and Oxidative Stress , 2014, Current Biology.
[39] K. Khoo,et al. Mass spectrometry-based quantitative proteomics for dissecting multiplexed redox cysteine modifications in nitric oxide-protected cardiomyocyte under hypoxia. , 2014, Antioxidants & redox signaling.
[40] A. Aharoni,et al. Mapping the diatom redox-sensitive proteome provides insight into response to nitrogen stress in the marine environment , 2014, Proceedings of the National Academy of Sciences.
[41] George M Church,et al. pLogo: a probabilistic approach to visualizing sequence motifs , 2013, Nature Methods.
[42] Manuel Serrano,et al. The Hallmarks of Aging , 2013, Cell.
[43] Linda Partridge,et al. Cardioprotection by S-nitrosation of a cysteine switch on mitochondrial complex I , 2013, Nature Medicine.
[44] Kate S. Carroll,et al. Cysteine-Mediated Redox Signaling: Chemistry, Biology, and Tools for Discovery , 2013, Chemical reviews.
[45] R. Banerjee,et al. Time line of redox events in aging postmitotic cells , 2013, eLife.
[46] Edward T Chouchani,et al. Inactivation of Pyruvate Dehydrogenase Kinase 2 by Mitochondrial Reactive Oxygen Species* , 2012, The Journal of Biological Chemistry.
[47] S. Gygi,et al. MS3 eliminates ratio distortion in isobaric labeling-based multiplexed quantitative proteomics , 2011, Nature Methods.
[48] Linda Partridge,et al. Unraveling the biological roles of reactive oxygen species. , 2011, Cell metabolism.
[49] Edward T Chouchani,et al. Proteomic approaches to the characterization of protein thiol modification , 2011, Current opinion in chemical biology.
[50] Dean P. Jones,et al. Protein Cysteines Map to Functional Networks According to Steady-state Level of Oxidation. , 2011, Journal of proteomics & bioinformatics.
[51] Edward L. Huttlin,et al. A Tissue-Specific Atlas of Mouse Protein Phosphorylation and Expression , 2010, Cell.
[52] T. Hurd,et al. Cysteine residues exposed on protein surfaces are the dominant intramitochondrial thiol and may protect against oxidative damage , 2010, The FEBS journal.
[53] Peng Huang,et al. Role of mitochondria-associated hexokinase II in cancer cell death induced by 3-bromopyruvate. , 2009, Biochimica et biophysica acta.
[54] J. Winther,et al. Quantifying the global cellular thiol–disulfide status , 2009, Proceedings of the National Academy of Sciences.
[55] Israel Steinfeld,et al. BMC Bioinformatics BioMed Central , 2008 .
[56] Catherine Overy,et al. The mechanism of transport by mitochondrial carriers based on analysis of symmetry , 2008, Proceedings of the National Academy of Sciences.
[57] H. Schägger,et al. Identification of the Mitochondrial ND3 Subunit as a Structural Component Involved in the Active/Deactive Enzyme Transition of Respiratory Complex I* , 2008, Journal of Biological Chemistry.
[58] J. Strahler,et al. Quantifying changes in the thiol redox proteome upon oxidative stress in vivo , 2008, Proceedings of the National Academy of Sciences.
[59] L. Herzenberg,et al. N-Acetylcysteine--a safe antidote for cysteine/glutathione deficiency. , 2007, Current opinion in pharmacology.
[60] P. S. Ray,et al. Macromolecular complexes as depots for releasable regulatory proteins. , 2007, Trends in biochemical sciences.
[61] Steven P Gygi,et al. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry , 2007, Nature Methods.
[62] Zohar Yakhini,et al. Discovering Motifs in Ranked Lists of DNA Sequences , 2007, PLoS Comput. Biol..
[63] Edward L Huttlin,et al. Prediction of error associated with false-positive rate determination for peptide identification in large-scale proteomics experiments using a combined reverse and forward peptide sequence database strategy. , 2007, Journal of proteome research.
[64] Steven P Gygi,et al. A probability-based approach for high-throughput protein phosphorylation analysis and site localization , 2006, Nature Biotechnology.
[65] Kap-Seok Yang,et al. Reversible oxidation and inactivation of the tumor suppressor PTEN in cells stimulated with peptide growth factors. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[66] Sunghoon Kim,et al. Aminoacyl-tRNA synthetase complexes: beyond translation , 2004, Journal of Cell Science.
[67] A. Wollenberger,et al. Eine einfache Technik der extrem schnellen Abkühlung größerer Gewebestücke , 1960, Pflüger's Archiv für die gesamte Physiologie des Menschen und der Tiere.
[68] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.
[69] Joshua E. Elias,et al. Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. , 2003, Journal of proteome research.
[70] A. Halestrap,et al. Role of critical thiol groups on the matrix surface of the adenine nucleotide translocase in the mechanism of the mitochondrial permeability transition pore. , 2002, The Biochemical journal.
[71] P. Pedersen,et al. Glucose catabolism in the rabbit VX2 tumor model for liver cancer: characterization and targeting hexokinase. , 2001, Cancer letters.
[72] S. Gygi,et al. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags , 1999, Nature Biotechnology.
[73] J. Yates,et al. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database , 1994, Journal of the American Society for Mass Spectrometry.
[74] D. Wessel,et al. A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids. , 1984, Analytical biochemistry.
[75] D. Harman. Aging: a theory based on free radical and radiation chemistry. , 1956, Journal of gerontology.