AHP is a kind of very effective systematic analytical method, widely applied to energy utilizing and resource analyzing, talent predicting, economic management project, urban industries planning, communications and transportation, water resource using and so on, using this method to solve the problem of ecology also have very strong practicability and validity. Using 15 kinds of endured plants in East Alashan-West Erdos as the research objects, this paper adopts 3S technique and outfield investigates to confirm the geographical distributions, extent density in the distribution area, plant community construction, and plant community environment of the plants. Then invite the experts to give marks according to this datum and using the AHP method to deal with the results, thereby get the priority protective order of endangered plants in East Alashan-West Erdos.