Probing the Role of Sigma π Interaction and Energetics in the Catalytic Efficiency of Endo-1,4-β-Xylanase

ABSTRACT Chaetomium globosum endo-1,4-β-xylanase (XylCg) is distinguished from other xylanases by its high turnover rate (1,860 s−1), the highest ever reported for fungal xylanases. One conserved amino acid, W48, in the substrate binding pocket of wild-type XylCg was identified as an important residue affecting XylCg's catalytic efficiency.

[1]  J. Delcour,et al.  Mutagenesis and subsite mapping underpin the importance for substrate specificity of the aglycon subsites of glycoside hydrolase family 11 xylanases. , 2010, Biochimica et biophysica acta.

[2]  J. Lammertyn,et al.  Crystallographic and activity‐based evidence for thumb flexibility and its relevance in glycoside hydrolase family 11 xylanases , 2009, Proteins.

[3]  K. Ratanakhanokchai,et al.  Substrate-Binding Site of Family 11 Xylanase from Bacillus firmus K-1 by Molecular Docking , 2009, Bioscience, biotechnology, and biochemistry.

[4]  Sarah E. Kiehna,et al.  Carbohydrate-pi interactions: what are they worth? , 2008, Journal of the American Chemical Society.

[5]  N. Juge,et al.  Structure‐based mutagenesis of Penicillium griseofulvum xylanase using computational design , 2008, Proteins.

[6]  G. Volckaert,et al.  Crystallographic analysis shows substrate binding at the -3 to +1 active-site subsites and at the surface of glycoside hydrolase family 11 endo-1,4-beta-xylanases. , 2008, The Biochemical journal.

[7]  N. Juge,et al.  Understanding the structural basis for substrate and inhibitor recognition in eukaryotic GH11 xylanases. , 2008, Journal of molecular biology.

[8]  G. Gokel Indole, the aromatic element of tryptophan, as a pi-donor and amphiphilic headgroup , 2007 .

[9]  K. Harata,et al.  Structure of an orthorhombic form of xylanase II from Trichoderma reesei and analysis of thermal displacement. , 2006, Acta crystallographica. Section D, Biological crystallography.

[10]  N. Adir,et al.  Mapping glycoside hydrolase substrate subsites by isothermal titration calorimetry. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[11]  Jean-Guy Berrin,et al.  Specific Characterization of Substrate and Inhibitor Binding Sites of a Glycosyl Hydrolase Family 11 Xylanase fromAspergillus niger * , 2002, The Journal of Biological Chemistry.

[12]  J. Wouters,et al.  The endoxylanases from family 11: computer analysis of protein sequences reveals important structural and phylogenetic relationships. , 2002, Journal of biotechnology.

[13]  V. Ryzhov,et al.  Interactions of Phenol and Indole with Metal Ions in the Gas Phase: Models For Tyr and Trp Side-Chain Binding , 1999 .

[14]  Sandro Mecozzi,et al.  Cation−π Interactions in Simple Aromatics: Electrostatics Provide a Predictive Tool , 1996 .

[15]  J. Rouvinen,et al.  Structural comparison of two major endo-1,4-xylanases from Trichoderma reesei. , 1995, Biochemistry.

[16]  S. Withers,et al.  Identification of glutamic acid 78 as the active site nucleophile in Bacillus subtilis xylanase using electrospray tandem mass spectrometry. , 1994, Biochemistry.

[17]  M. Yaguchi,et al.  Mutational and crystallographic analyses of the active site residues of the bacillus circulans xylanase , 1994, Protein science : a publication of the Protein Society.