The loss of photosynthetic pathways in the plastid and nuclear genomes of the non-photosynthetic mycoheterotrophic eudicot Monotropa hypopitys
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N. Ravin | K. Skryabin | A. Mardanov | E. Kochieva | A. Mazur | E. Prokhortchouk | V. Kadnikov | A. Beletsky | M. Filyushin | E. V. Gruzdev
[1] M. Logacheva,et al. Comparative analysis of plastid genomes of non-photosynthetic Ericaceae and their photosynthetic relatives , 2016, Scientific Reports.
[2] E. Kochieva,et al. Polymorphism of sequences and the secondary structure of b/c intron of mitochondrial gene nad1 in Monotropa hypopitys and related ericaceae species , 2016, Biology Bulletin.
[3] N. Ravin,et al. The complete chloroplast genome of parasitic flowering plant Monotropa hypopitys: extensive gene losses and size reduction , 2016, Mitochondrial DNA. Part B, Resources.
[4] Susanne S. Renner,et al. The Plastomes of Two Species in the Endoparasite Genus Pilostyles (Apodanthaceae) Each Retain Just Five or Six Possibly Functional Genes , 2015, Genome biology and evolution.
[5] E. Kochieva,et al. Intraspecific variability of ITS sequences in the parasitic plant Monotropa hypopitys L. from the European Russian populations , 2015, Russian Journal of Genetics.
[6] S. Graham,et al. The Highly Reduced Plastome of Mycoheterotrophic Sciaphila (Triuridaceae) Is Colinear with Its Green Relatives and Is under Strong Purifying Selection , 2015, Genome biology and evolution.
[7] M. Logacheva,et al. Exploring the Limits for Reduction of Plastid Genomes: A Case Study of the Mycoheterotrophic Orchids Epipogium aphyllum and Epipogium roseum , 2015, Genome biology and evolution.
[8] Timothy B Sackton,et al. Investigating the path of plastid genome degradation in an early-transitional clade of heterotrophic orchids, and implications for heterotrophic angiosperms. , 2014, Molecular biology and evolution.
[9] Daniel B. Sloan,et al. A recurring syndrome of accelerated plastid genome evolution in the angiosperm tribe Sileneae (Caryophyllaceae). , 2014, Molecular phylogenetics and evolution.
[10] Rachel S. Meyer,et al. Possible Loss of the Chloroplast Genome in the Parasitic Flowering Plant Rafflesia lagascae (Rafflesiaceae) , 2014, Molecular biology and evolution.
[11] M. Logacheva,et al. The Plastid Genome of Mycoheterotrophic Monocot Petrosavia stellaris Exhibits Both Gene Losses and Multiple Rearrangements , 2014, Genome biology and evolution.
[12] Yan Zhang,et al. Mechanisms of Functional and Physical Genome Reduction in Photosynthetic and Nonphotosynthetic Parasitic Plants of the Broomrape Family[W][OPEN] , 2013, Plant Cell.
[13] Colin N. Dewey,et al. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis , 2013, Nature Protocols.
[14] Marc Lohse,et al. OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets , 2013, Nucleic Acids Res..
[15] Masato Nakai,et al. Uncovering the Protein Translocon at the Chloroplast Inner Envelope Membrane , 2013, Science.
[16] Jerrold I. Davis,et al. The plastid genome of the mycoheterotrophic Corallorhiza striata (Orchidaceae) is in the relatively early stages of degradation. , 2012, American journal of botany.
[17] S. Stefanović,et al. Plastid genome evolution in mycoheterotrophic Ericaceae , 2012, Plant Molecular Biology.
[18] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[19] K. Krause. Plastid Genomes of Parasitic Plants: A Trail of Reductions and Losses , 2012 .
[20] Lena L. Landherr,et al. Transcriptomes of the Parasitic Plant Family Orobanchaceae Reveal Surprising Conservation of Chlorophyll Synthesis , 2011, Current Biology.
[21] M. Logacheva,et al. Sequencing and Analysis of Plastid Genome in Mycoheterotrophic Orchid Neottia nidus-avis , 2011, Genome biology and evolution.
[22] Colin N. Dewey,et al. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome , 2011, BMC Bioinformatics.
[23] Marcel Martin. Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .
[24] Ian Small,et al. Rampant Gene Loss in the Underground Orchid Rhizanthella gardneri Highlights Evolutionary Constraints on Plastid Genomes , 2011, Molecular biology and evolution.
[25] M. Selosse,et al. Mycoheterotrophy evolved from mixotrophic ancestors: evidence in Cymbidium (Orchidaceae). , 2010, Annals of botany.
[26] N. Brisson,et al. Recombination and the maintenance of plant organelle genome stability. , 2010, The New phytologist.
[27] Claude W dePamphilis,et al. The evolution of parasitism in plants. , 2010, Trends in plant science.
[28] V. Merckx,et al. Evolution of mycoheterotrophy in plants: a phylogenetic perspective. , 2010, The New phytologist.
[29] M. Sugiura,et al. An organellar maturase associates with multiple group II introns , 2010, Proceedings of the National Academy of Sciences.
[30] S. Yoshida,et al. A full-length enriched cDNA library and expressed sequence tag analysis of the parasitic weed, Striga hermonthica , 2010, BMC Plant Biology.
[31] C. dePamphilis,et al. Functional gene losses occur with minimal size reduction in the plastid genome of the parasitic liverwort Aneura mirabilis. , 2008, Molecular biology and evolution.
[32] P. Stevens,et al. Phylogenetic classification of Ericaceae: Molecular and morphological evidence , 2002, The Botanical Review.
[33] Uwe G Maier,et al. Complete DNA sequences of the plastid genomes of two parasitic flowering plant species, Cuscuta reflexa and Cuscuta gronovii , 2007, BMC Plant Biology.
[34] J. Yoder,et al. Pscroph, a parasitic plant EST database enriched for parasite associated transcripts , 2005, BMC Plant Biology.
[35] A. Day,et al. The tobacco plastid accD gene is essential and is required for leaf development. , 2005, The Plant journal : for cell and molecular biology.
[36] M. Bidartondo. The evolutionary ecology of myco-heterotrophy. , 2005, The New phytologist.
[37] Robert K. Jansen,et al. Automatic annotation of organellar genomes with DOGMA , 2004, Bioinform..
[38] Samuel I. Beale,et al. Enzymes of chlorophyll biosynthesis , 1999, Photosynthesis Research.
[39] M. Källersjö,et al. Phylogenetic relationships in the order Ericales s.l.: analyses of molecular data from five genes from the plastid and mitochondrial genomes. , 2002, American journal of botany.
[40] Akiyasu C. Yoshizawa,et al. KAAS: an automatic genome annotation and pathway reconstruction server , 2007, Environmental health perspectives.
[41] J. Leake. The biology of myco-heterotrophic ('saprophytic') plants. , 1994, The New phytologist.
[42] J. Palmer,et al. Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[43] J. Palmer,et al. Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant , 1990, Nature.
[44] Y. Ogihara,et al. Intramolecular recombination of chloroplast genome mediated by short direct-repeat sequences in wheat species. , 1988, Proceedings of the National Academy of Sciences of the United States of America.